BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79730.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477298 jgi|Araly1|477298|fgenesh2_kg.2__2428__AT1G79730.1 2754 0.0
Ahg340237 jgi|Araly1|340237|fgenesh1_pg.C_scaffold_2002336 1122 0.0
Ahg948109 jgi|Araly1|948109|scaffold_704338.1 316 3e-85
Ahg925932 jgi|Araly1|925932|scaffold_201493.1 187 2e-46
> Ahg477298 jgi|Araly1|477298|fgenesh2_kg.2__2428__AT1G79730.1
Length=1931
Score = 2754 bits (1491), Expect = 0.0
Identities = 1785/1920 (93%), Gaps = 47/1920 (2%)
Strand=Plus/Plus
Query 83 CTCAAAATTCTTTGGcccctccgcctcccccgccgtcgttaccccctcctgttcctcccc 142
|||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 42 CTCAAAATCCTTTGGCCCCTCCGCCTCCTCCGCCGTCTTTACCCCCTCCTGTTCCTCCCC 101
Query 143 cACCACCGTCGCATCAACCGTACTCATATCCTCCGCCGCCGCCTCCTCCTCCGCATGCTT 202
||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 102 CACCACCGTCGCATCAACCGTACTCTTATCCT---CCGCCGCCTCCCCCTCCGCATGCTT 158
Query 203 ACTATCAGCAGGGGCCCCACTAtcctcaattcaaccagctccaagctcctcctcct---c 259
|||||||||| | |||||||||||||||||| ||||||||||||||||| |
Sbjct 159 ACTATCAGCA---G------TATCCTCAATTCAACCAGGTCCAAGCTCCTCCTCCTCCAC 209
Query 260 cgccacctccctcagctcctcctccgctcgttcccgatcctcctcGACA-CCAGGGTCCC 318
| ||||||||||||||||||||||| ||||| ||||||||||||||| | | |||| |||
Sbjct 210 CTCCACCTCCCTCAGCTCCTCCTCCCCTCGTACCCGATCCTCCTCGAAATCAAGGG-CCC 268
Query 319 AATGACCACGAGAAAGGGGCCTCCAAGCAGGTTGGAAGGCGGGAGCGTGCTAAACCGGAT 378
||||||| ||| |||||||||| | | ||||||||||||||||||||||||
Sbjct 269 AATGACCGCGACAAAGGGGCCT-----C------G-AGGCGGGAGCGTGCTAAACCGGAT 316
Query 379 CCATCGAAGCACCACCACAGGTCTCATCTTCCTCATTCTAAGAAAATCGAGACCGAAGAA 438
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 317 CCATCGAAG---CACCACAGGTCTCATCTTCCCCATACTAAGAAAATCGAGACCGAAGAA 373
Query 439 GAGAGGAGGCTTAGGAAGAAGAGGGAGTTAGAGAAACAAAGGCAAGACGAAAAACATAGA 498
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 374 GAGAGGAGGCTTAGGAAGAAGAAGGAGTTAGAGAAACAAAGGCAAGAAGAAAAACTTAGA 433
Query 499 CAGCAGATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACCGAGGAGAAGAAG 558
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 434 CAGCAGATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAG 493
Query 559 CCGACGCCCCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTC 618
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CCGACGCCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTC 553
Query 619 ATCTGCAAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCACAGCTTAAGCTTATG 678
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 554 ATCTGCAAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATG 613
Query 679 ACCATTAAACGGGATAAAGATCAATTTACAAAGTATACCATCACATCCCTGGAGAAATTA 738
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 614 ACCATTAAGCGGGATAAAGATCAATTTACAAAGTATACCATCACATCGCTGGAGAAATTA 673
Query 739 TGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTA 733
Query 799 AGTGTGTACAACCCTCCCAAAGTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACT-CTT 857
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 734 AGTGTATACAACCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGC-T 792
Query 858 GCGTGATGATGACGCTGTTACACCTATTAAGAAAGATGGCATCCGGAGGAAAGAAAGACC 917
|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 793 GCGTGATGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCC 852
Query 918 TACTGATAAAGGCATGTCTTGGCTCGTCAAAACACAATACATTTCTTCTATTAATAACGA 977
||||||||||| | || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 853 AACTGATAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGA 912
Query 978 ATCGGCAAGACAGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGG 1037
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 913 ATCGGCAAGACAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGG 972
Query 1038 CATCAACATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATC 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CATCAACATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATC 1032
Query 1098 CTTTGAGGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAACTTGCAGCCGGTTGA 1157
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1033 CTTTGAAGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGA 1092
Query 1158 AGTTCTACCACTGTTGCCATATTTTGATAGGTACGATGAGCAGTTTGTGGTAGCGAATTT 1217
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AGTTTTACCACTGTTGCCATATTTTGATAGGTACGATGAGCAGTTTGTGGTAGCGAATTT 1152
Query 1218 TGATGGTGCTCCTATAGCTGATTCTGAATTCTTTGGCAAGTTGGACCCTTCAATTCGTGA 1277
|||| ||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 1153 TGATAGTGCTCCTACAGCTGATTCTGAATTCTTTGGCAAGCTAGACCCATCAATTCGTGA 1212
Query 1278 TGCACATGAGTCACGGGCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAA 1337
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TGAACATGAGTCACGGGCCATTTTGAAAAGCTATGTGGTGGCTGGATCAGACACTGCCAA 1272
Query 1338 TCCAGAAAAATTTCTGGCGTACATGGTTCCTTCCTTGGATGAGTTGTCTAAGGATATCCA 1397
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1273 TCCAGAAAAATTTCTGGCGTACATGGTTCCTTCGTTGGATGAGTTGTCTAAGGATATGCA 1332
Query 1398 TGATGAAAACGAAGAAATCTCTTACACTTGGGTTCGCGAATACCTCTGGGATGTACAACC 1457
||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1333 TGATGAAGACGAAGATATCTCTTACACTTGGGTTCGCGAATACCACTGGGATGTACGTGG 1392
Query 1458 C-A--ATGCAAACGATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTA 1514
| ||||||| ||| |||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1393 TGATGATGCAAATGATATTGGCACATACCTGGTATCGTTTGATGATGGGGCCGCTAGCTA 1452
Query 1515 TCTGCCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGATCTTC 1574
|||||||||||||| || | |||||||||||||||||||| |||||||||||||||||||
Sbjct 1453 TCTGCCCCTACCCACGAAGCTGAACTTGAGGAAGAAAAGGCCCAGGGAAGGAAGATCTTC 1512
Query 1575 TGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTAACTGTAAGGCGGAGATCAACTGT 1634
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1513 TGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTGACTGTAAGGCGAAGATCAACTGT 1572
Query 1635 ATCAGTGATAGAACATAAAGATTCAGGGGTTTACTCTTCTAGGGTTGGTGCTTCGAGCTC 1694
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 ATCAGTGATCGAACATAAAGATTCAGGGGTTTACTCTTCTAGGGTTGGTGCTTCGAGCTC 1632
Query 1695 CAAGATGAGAAGATTAGAGGACGAAGGCGGCCTTGGTAGATCTTGGAAACACGAGCCGGA 1754
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1633 CAAGATGAGAAGATTAGAGGACGAAGAAGGCCTTGGTAGATCTTGGAAACATGAGCCGGA 1692
Query 1755 ACAAGATGCCAATCAATATAGTGATGGTAATGAGGATGATTATTCTGAATGAACGTTTCG 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 ACAAGATGCCAATCAATATAGTGATGGTAATGAGGATGATTATTCTGAATGAACGTTTTA 1752
Query 1815 TGTACCTCAAACTATTGAATCGGTTTTGCAATGGT-T-T----T--CCTGCAAGGCTA-T 1865
||||| |||||||||| |||||||||| ||||||| | | | |||||||||||| |
Sbjct 1753 TGTACTTCAAACTATTCAATCGGTTTTCCAATGGTGTGTGAAGTATCCTGCAAGGCTACT 1812
Query 1866 TGTAGGCTAATTTAAAAGCGTAATATGGCCTCCACCACAGCTTTGTAGTTTGGCAAGTAA 1925
| |||||||||||||| ||||||||||||||| |||| ||| | ||| ||||||||||||
Sbjct 1813 TTTAGGCTAATTTAAA-GCGTAATATGGCCTCGACCAGAGCCTCGTAATTTGGCAAGTAA 1871
Query 1926 AGAAATTTTGATTTGGATAGCTGGCGAAGTTGAAAAACGATTTTACATGTACACGTCCAT 1985
|||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1872 AGAAATATTGATTTGGATAGCTGGCGAAGCTGAAAAACGATTTGACATGTACACGTCCAT 1931
> Ahg340237 jgi|Araly1|340237|fgenesh1_pg.C_scaffold_2002336
Length=993
Score = 1122 bits (607), Expect = 0.0
Identities = 660/686 (96%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 505 ATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACCGAGGAGAAGAAGCCGACG 564
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 157 ATGAATAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAGCCGACG 216
Query 565 CCCCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGC 624
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGC 276
Query 625 AAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCACAGCTTAAGCTTATGACCATT 684
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 277 AAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATGACCATT 336
Query 685 AAACGGGATAAAGATCAATTTACAAAGTATACCATCACATCCCTGGAGAAATTATGGAAA 744
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 337 AAGCGGGATAAAGATCAATTTACAAAGTATACCATCACATCGCTGGAGAAATTATGGAAA 396
Query 745 CCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTG 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTA 456
Query 805 TACAACCCTCCCAAAGTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACT-CTTGCGTGA 863
||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 457 TACAACCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGC-TGCGTGA 515
Query 864 TGATGACGCTGTTACACCTATTAAGAAAGATGGCATCCGGAGGAAAGAAAGACCTACTGA 923
|||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 516 TGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCCAACTGA 575
Query 924 TAAAGGCATGTCTTGGCTCGTCAAAACACAATACATTTCTTCTATTAATAACGAATCGGC 983
|||||| | || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 576 TAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGAATCGGC 635
Query 984 AAGACAGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAA 1043
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 636 AAGACAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAA 695
Query 1044 CATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGA 755
Query 1104 GGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAACTTGCAGCCGGTTGAAGTTCT 1163
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 756 AGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGAAGTTTT 815
Query 1164 ACCACTGTTGCCATATTTTGATAGGT 1189
||||||||||||||||||||||||||
Sbjct 816 ACCACTGTTGCCATATTTTGATAGGT 841
> Ahg948109 jgi|Araly1|948109|scaffold_704338.1
Length=1065
Score = 316 bits (171), Expect = 3e-85
Identities = 191/201 (95%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 989 AGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCT 1048
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCT 782
Query 1049 TGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAGGCAT 1108
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 783 TGCAGAATCTTAACAATAGAGAGAGACAAATCATGGATATTGAAGCATCCTTTGAGGCAT 842
Query 1109 GCAAGTCTCGACCAGTTCATGCCACCAATAAAAACTTGCAGCCGGTTGAAGTTCTACCAC 1168
||||||||| |||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 843 GCAAGTCTCAACCAATTCATTCCACCAATAAAAACGTGCAGCCGGTTGAAGTTTTACCAC 902
Query 1169 TGTTGCCATATTTTGATAGGT 1189
||||| |||||||||||||||
Sbjct 903 TGTTGGCATATTTTGATAGGT 923
> Ahg925932 jgi|Araly1|925932|scaffold_201493.1
Length=646
Score = 187 bits (101), Expect = 2e-46
Identities = 117/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1065 TAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAGGCATGCAAGTCTCGACCAGT 1124
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 350 TAGAGAGAGACAAATCATGGATATTGAAGCATCCTTTGAGGCATGCAAGTCTCAACCAAT 409
Query 1125 TCATGCCACCAATAAAAACTTGCAGCCGGTTGAAGTTCTACCACTGTTGCCATATTTTGA 1184
|||| |||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||
Sbjct 410 TCATTCCACCAATAAAAACGTGCAACCGGTTGAAGTTTTACCACTGTTGGCATATTTTGA 469
Query 1185 TAGGT 1189
|||||
Sbjct 470 TAGGT 474
Score = 124 bits (67), Expect = 2e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 983 CAA-GACAGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATC 1041
||| || |||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 186 CAAGGAAAGTCGCTAACTGAGAAACAAGGAAAGGAACTGCGAGAGATGAAAGGAGGCATC 245
Query 1042 AACATCTTGCACAATCTTAACAATAG 1067
||||||||| ||||||||||||||||
Sbjct 246 AACATCTTGGACAATCTTAACAATAG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5