BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79750.1 Length=2484 Score E Sequences producing significant alignments: (Bits) Value Ahg927538 jgi|Araly1|927538|scaffold_203099.1 3290 0.0 > Ahg927538 jgi|Araly1|927538|scaffold_203099.1 Length=1981 Score = 3290 bits (1781), Expect = 0.0 Identities = 1911/1976 (97%), Gaps = 0/1976 (0%) Strand=Plus/Plus Query 195 ACAAGGCATCCCCAGACGCCATGATCTCTCTCACTCCCTCGTTGTTTCTGAACAAGACGG 254 ||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||| Sbjct 1 ACAAGGCATCCCCAGGCGCCATGATCTCTCTGAGTCCCTCGTCGTTTCTGAACAAGACGG 60 Query 255 TTGTTCCTGGATGTTCCACACGCCTCTCTCTGCGCCAGCCTAGAACTATAATTACTCCTC 314 ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||| Sbjct 61 TTGTTCCTGGATGTTCCACACACCTCTTTCTGCGCCAGCCTAGAACTCTAATTACCCCTC 120 Query 315 CTGCTTCCTTGAGAGTCTTTTCCTCTCTCGGATCTAACCAGGATCCCACCGGCAGCGTTT 374 |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| || Sbjct 121 CTGCTTCCTTGAGAGTGTTTTCCTCTCTCGGATCTAACCGGGATCCCAACGGCAGCCTTC 180 Query 375 TGATTGAGACCACTGCCACTTCATCCTCCTCTCTCGAGACCTCCGCCGCCGACATTGTTC 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGATTGAGACCACTGCCACTTCATCCTCCTCTCTCGAGACCTCCGCCGCCGACATTGTTC 240 Query 435 CCAAATCCACCGTATCTGGTGGAGTTCAGGATGTCTACGGCGAGGATGCCGCCACCGAGG 494 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 241 CCAAATCCACCGTATCTGGTGGAGTTCAGGATGTCTACGGCGAGGATGCTGCCACCGAGG 300 Query 495 ACATGCCTATCACTCCTTGGTCTCTCTCTGTCGCCAGTGGGTATACGTTGTTGCGTGATC 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ACATGCCTATCACTCCTTGGTCTCTCTCTGTCGCCAGTGGGTATACGTTGTTGCGTGATC 360 Query 555 CACATCACAACAAAGGCCTTGCCTTTAGCCACAGAGAGCGTGACGCTCACTATCTACGCG 614 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 CACATCACAACAAAGGCCTTGCCTTTAGCCACAGGGAGCGTGACGCTCACTATCTACGCG 420 Query 615 GCCTCCTcccccccACTGTTATCTCACAAGATCTTCAGGTTaaaaaaaTTATGCACACTC 674 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 421 GCCTCCTCCCCCCCACTGTTATCTCCCAAGATCTTCAGGTTAAAAAAATGATGCACACTC 480 Query 675 TTCGTCAGTATCAAGTTCCCTTGCAGAAGTATATGGCTATGATGGATCTCCAGGAGACCA 734 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 TTCGTCAGTATCAAGTTCCCTTGCAGAGGTATATGGCTATGATGGATCTCCAGGAGACCA 540 Query 735 ACGAGAGGCTGTTTTACAAACTTCTCATTGATCACGTCGAGGAGTTGCTACCCGTTATCT 794 |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||| Sbjct 541 ACGAGAGGCTCTTTTACAAGCTTCTCATTGATCACGTCGAGGAGTTGCTACCAGTTGTCT 600 Query 795 ACACTCCAACGGTTGGGGAAGCCTGCCAGAAGTATGGTAGCATTTTCCTGCGTCCACAGG 854 | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 601 ATACTCCAACGGTCGGGGAAGCCTGCCAGAAGTATGGTAGCATTTTCCTGCGCCCACAGG 660 Query 855 GGCTTTTTATCAGCTTGAAAGAAAAAGGTAAGATTCATGAAGTGCTGAGGAACTGGCCTG 914 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 661 GGCTTTTTATCAGCTTGAAAGAAAAAGGCAAGATCCATGAAGTGCTGAGGAACTGGCCTG 720 Query 915 AGAAGAACATCCAGGTCATTGTTGTCACTGATGGGGAGCGCATTTTAGGGTTAGGAGATC 974 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGAAGAACATTCAGGTCATTGTTGTCACTGATGGGGAGCGCATTTTAGGGTTAGGAGATC 780 Query 975 TTGGATGTCAGGGAATGGGAATACCTGTTGGGAAACTTTCTCTCTACACAGCCCTTGGAG 1034 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 781 TTGGATGTCAGGGAATGGGAATACCAGTTGGGAAACTTTCTCTCTATACAGCCCTTGGAG 840 Query 1035 GTGTCCGGCCATCTGCCTGTCTGCCCGTAACAATCGATGTTGGGACAAACAACGAAAAGC 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GTGTCCGGCCATCTGCCTGTCTGCCCGTAACAATCGATGTTGGGACAAACAACGAAAAGC 900 Query 1095 TATTGAACGATGAGTTCTACATAGGGCTCCGCCAAAGGAGAGCTACAGGAGAGGAATACT 1154 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 901 TATTGAACGATGAGTTCTACATAGGACTCCGTCAAAGGAGAGCTACAGGAGAGGAATACT 960 Query 1155 CCGAACTTATGCATGAATTCATGACAGCAGTCAAGCAGAACTATGGGGAGAAAGTCGTTA 1214 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 961 CTGAACTTATGCATGAATTCATGACAGCAGTCAAGCAGAACTATGGGGAGAAAGTTGTTA 1020 Query 1215 TTCAGTTTGAAGACTTTGCCAACCATAATGCTTTTGATCTGTTAGCTAAGTATGGTACAA 1274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTCAGTTTGAAGACTTTGCCAACCATAATGCTTTTGATCTGTTAGCTAAGTATGGTACAA 1080 Query 1275 CACATCTTGTTTTCAATGACGATATTCAGGGCACAGCATCAGTTGTGCTTGCTGGACTTA 1334 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1081 CACATCTTGTTTTCAATGACGATATTCAGGGAACAGCATCAGTTGTGCTTGCGGGACTTA 1140 Query 1335 TCGCTGCTCTTAGATTTGTGGGGGGATCCTTGTCAGACCACAGATTCCTCTTCCTCGGGG 1394 | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | Sbjct 1141 TTGCTGCTCTTAGATTTGTGGGGGGATCCTTGTCAAACCACAGATTCCTCTTCCTTGGTG 1200 Query 1395 CTGGAGAGGCTGGCACTGGAATAGCTGAACTAATTGCTCTTGAGATTTCAAAGAAGTCCC 1454 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 CTGGAGAGGCAGGCACCGGAATAGCTGAACTAATTGCTCTTGAGATTTCAAAGAAGTCCC 1260 Query 1455 ATATTCCATTGGAAGAGGCTCGGAAGAATATTTGGCTCGTGGATTCAAAGGGATTGATTG 1514 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1261 ATATTCCATTGGAAGAGGCTCGGAAGAATATTTGGCTCGTGGATTCGAAGGGATTGATTG 1320 Query 1515 TCAGTTCCCGGAAAGAATCCATTCAACATTTCAAAAAGCCCTGGGCTCATGACCATGAAC 1574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TCAGTTCCCGGAAAGAATCCATTCAACATTTCAAAAAGCCCTGGGCTCATGACCATGAAC 1380 Query 1575 CAATAAGGGAACTTGTTGATGCCGTCAAGGCAATCAAGCCGACAGTTCTGATCGGAACAT 1634 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CGATAAGGGAACTTGTTGATGCCGTCAAGGCAATCAAGCCGACAGTTCTGATCGGAACAT 1440 Query 1635 CAGGTGTAGGTCAAACATTCACTCAAGACGTGGTGGAAACCATGGCAAAGCTAAATGAGA 1694 | || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1441 CGGGAGTAGGTCAAACATTCACTCAAGACGTTGTGGAAACCATGGCAGAGCTAAATGAGA 1500 Query 1695 AACCCATCATTCTTTCTCTTTCGAACCCAACTTCTCAGTCAGAATGTACGGCAGAAGAGG 1754 ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 1501 AACCCATCATTCTCTCTCTTTCAAACCCAACTTCTCAGTCAGAATGTACGGCGGAACAGG 1560 Query 1755 CCTATACGTGGAGTCAGGGACGGGCGATCTTTGCAAGTGGAAGCCCATTTGCGCCAGTAG 1814 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1561 CCTATACGTGGAGTCAGGGACGGGCGATCTTTGCTAGTGGAAGCCCATTTGCGCCAGTAG 1620 Query 1815 AGTATGAGGGAAAGACGTTTGTGCCTGGACAGGCAAACAACGCATACATCTTCCCTGGGT 1874 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 1621 AGTATGAGGGAAAGACGTTTGTGCCTGGACAGGCGAACAATGCATACATCTTTCCTGGGT 1680 Query 1875 TTGGACTCGGGCTAATAATGTCAGGGACGATCCGTGTCCATGATGACATGCTTCTGGCAG 1934 ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct 1681 TTGGACTGGGGCTAATAATGTCAGGGACCATCCGAGTCCATGATGACATGCTTTTGGCCG 1740 Query 1935 CATCAGAAGCTTTGGCTGAGGAACTGATGGAGGAACACTATGAGAAGGGGATGATATACC 1994 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1741 CGTCAGAAGCTTTGGCTGAGGAACTGATGGAGGAACACTATGAGAAGGGGATGATATACC 1800 Query 1995 CTCCCTTCAGGAATATCAGAAAAATCTCAGCTCGTATTGCAGCTAAGGTGGCTGCCAAGG 2054 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1801 CTCCCTTCAGGAATATCAGAAAAATCTCGGCTCGTATTGCAGCTAAGGTGGCTGCCAAGG 1860 Query 2055 CCTACGAACTGGGACTGGCCACGAGGTTGCCTCAGCCCAAGGAGCTGGAGCAGTGTGCTG 2114 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1861 CCTATGAACTGGGACTGGCCACGAGGTTGCCTCAGCCCAAGGAGCTGGAGCAGTGTGCTG 1920 Query 2115 AGAGCAGCATGTACAGCCCTTCGTATCGAAGCTACCGCTGAGGATAAGCTTAATCT 2170 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1921 AGAGCAGCATGTACAGCCCTTCTTATCGAAGCTACCGCTGAGGATAAGCTTAATCT 1976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93625822210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5