BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79750.1
Length=2484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927538 jgi|Araly1|927538|scaffold_203099.1 3290 0.0
> Ahg927538 jgi|Araly1|927538|scaffold_203099.1
Length=1981
Score = 3290 bits (1781), Expect = 0.0
Identities = 1911/1976 (97%), Gaps = 0/1976 (0%)
Strand=Plus/Plus
Query 195 ACAAGGCATCCCCAGACGCCATGATCTCTCTCACTCCCTCGTTGTTTCTGAACAAGACGG 254
||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 1 ACAAGGCATCCCCAGGCGCCATGATCTCTCTGAGTCCCTCGTCGTTTCTGAACAAGACGG 60
Query 255 TTGTTCCTGGATGTTCCACACGCCTCTCTCTGCGCCAGCCTAGAACTATAATTACTCCTC 314
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||
Sbjct 61 TTGTTCCTGGATGTTCCACACACCTCTTTCTGCGCCAGCCTAGAACTCTAATTACCCCTC 120
Query 315 CTGCTTCCTTGAGAGTCTTTTCCTCTCTCGGATCTAACCAGGATCCCACCGGCAGCGTTT 374
|||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 121 CTGCTTCCTTGAGAGTGTTTTCCTCTCTCGGATCTAACCGGGATCCCAACGGCAGCCTTC 180
Query 375 TGATTGAGACCACTGCCACTTCATCCTCCTCTCTCGAGACCTCCGCCGCCGACATTGTTC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGATTGAGACCACTGCCACTTCATCCTCCTCTCTCGAGACCTCCGCCGCCGACATTGTTC 240
Query 435 CCAAATCCACCGTATCTGGTGGAGTTCAGGATGTCTACGGCGAGGATGCCGCCACCGAGG 494
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 CCAAATCCACCGTATCTGGTGGAGTTCAGGATGTCTACGGCGAGGATGCTGCCACCGAGG 300
Query 495 ACATGCCTATCACTCCTTGGTCTCTCTCTGTCGCCAGTGGGTATACGTTGTTGCGTGATC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACATGCCTATCACTCCTTGGTCTCTCTCTGTCGCCAGTGGGTATACGTTGTTGCGTGATC 360
Query 555 CACATCACAACAAAGGCCTTGCCTTTAGCCACAGAGAGCGTGACGCTCACTATCTACGCG 614
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CACATCACAACAAAGGCCTTGCCTTTAGCCACAGGGAGCGTGACGCTCACTATCTACGCG 420
Query 615 GCCTCCTcccccccACTGTTATCTCACAAGATCTTCAGGTTaaaaaaaTTATGCACACTC 674
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 421 GCCTCCTCCCCCCCACTGTTATCTCCCAAGATCTTCAGGTTAAAAAAATGATGCACACTC 480
Query 675 TTCGTCAGTATCAAGTTCCCTTGCAGAAGTATATGGCTATGATGGATCTCCAGGAGACCA 734
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TTCGTCAGTATCAAGTTCCCTTGCAGAGGTATATGGCTATGATGGATCTCCAGGAGACCA 540
Query 735 ACGAGAGGCTGTTTTACAAACTTCTCATTGATCACGTCGAGGAGTTGCTACCCGTTATCT 794
|||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 541 ACGAGAGGCTCTTTTACAAGCTTCTCATTGATCACGTCGAGGAGTTGCTACCAGTTGTCT 600
Query 795 ACACTCCAACGGTTGGGGAAGCCTGCCAGAAGTATGGTAGCATTTTCCTGCGTCCACAGG 854
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 ATACTCCAACGGTCGGGGAAGCCTGCCAGAAGTATGGTAGCATTTTCCTGCGCCCACAGG 660
Query 855 GGCTTTTTATCAGCTTGAAAGAAAAAGGTAAGATTCATGAAGTGCTGAGGAACTGGCCTG 914
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 661 GGCTTTTTATCAGCTTGAAAGAAAAAGGCAAGATCCATGAAGTGCTGAGGAACTGGCCTG 720
Query 915 AGAAGAACATCCAGGTCATTGTTGTCACTGATGGGGAGCGCATTTTAGGGTTAGGAGATC 974
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAGAACATTCAGGTCATTGTTGTCACTGATGGGGAGCGCATTTTAGGGTTAGGAGATC 780
Query 975 TTGGATGTCAGGGAATGGGAATACCTGTTGGGAAACTTTCTCTCTACACAGCCCTTGGAG 1034
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 781 TTGGATGTCAGGGAATGGGAATACCAGTTGGGAAACTTTCTCTCTATACAGCCCTTGGAG 840
Query 1035 GTGTCCGGCCATCTGCCTGTCTGCCCGTAACAATCGATGTTGGGACAAACAACGAAAAGC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGTCCGGCCATCTGCCTGTCTGCCCGTAACAATCGATGTTGGGACAAACAACGAAAAGC 900
Query 1095 TATTGAACGATGAGTTCTACATAGGGCTCCGCCAAAGGAGAGCTACAGGAGAGGAATACT 1154
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 901 TATTGAACGATGAGTTCTACATAGGACTCCGTCAAAGGAGAGCTACAGGAGAGGAATACT 960
Query 1155 CCGAACTTATGCATGAATTCATGACAGCAGTCAAGCAGAACTATGGGGAGAAAGTCGTTA 1214
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 CTGAACTTATGCATGAATTCATGACAGCAGTCAAGCAGAACTATGGGGAGAAAGTTGTTA 1020
Query 1215 TTCAGTTTGAAGACTTTGCCAACCATAATGCTTTTGATCTGTTAGCTAAGTATGGTACAA 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCAGTTTGAAGACTTTGCCAACCATAATGCTTTTGATCTGTTAGCTAAGTATGGTACAA 1080
Query 1275 CACATCTTGTTTTCAATGACGATATTCAGGGCACAGCATCAGTTGTGCTTGCTGGACTTA 1334
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1081 CACATCTTGTTTTCAATGACGATATTCAGGGAACAGCATCAGTTGTGCTTGCGGGACTTA 1140
Query 1335 TCGCTGCTCTTAGATTTGTGGGGGGATCCTTGTCAGACCACAGATTCCTCTTCCTCGGGG 1394
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1141 TTGCTGCTCTTAGATTTGTGGGGGGATCCTTGTCAAACCACAGATTCCTCTTCCTTGGTG 1200
Query 1395 CTGGAGAGGCTGGCACTGGAATAGCTGAACTAATTGCTCTTGAGATTTCAAAGAAGTCCC 1454
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGGAGAGGCAGGCACCGGAATAGCTGAACTAATTGCTCTTGAGATTTCAAAGAAGTCCC 1260
Query 1455 ATATTCCATTGGAAGAGGCTCGGAAGAATATTTGGCTCGTGGATTCAAAGGGATTGATTG 1514
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 ATATTCCATTGGAAGAGGCTCGGAAGAATATTTGGCTCGTGGATTCGAAGGGATTGATTG 1320
Query 1515 TCAGTTCCCGGAAAGAATCCATTCAACATTTCAAAAAGCCCTGGGCTCATGACCATGAAC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCAGTTCCCGGAAAGAATCCATTCAACATTTCAAAAAGCCCTGGGCTCATGACCATGAAC 1380
Query 1575 CAATAAGGGAACTTGTTGATGCCGTCAAGGCAATCAAGCCGACAGTTCTGATCGGAACAT 1634
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGATAAGGGAACTTGTTGATGCCGTCAAGGCAATCAAGCCGACAGTTCTGATCGGAACAT 1440
Query 1635 CAGGTGTAGGTCAAACATTCACTCAAGACGTGGTGGAAACCATGGCAAAGCTAAATGAGA 1694
| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1441 CGGGAGTAGGTCAAACATTCACTCAAGACGTTGTGGAAACCATGGCAGAGCTAAATGAGA 1500
Query 1695 AACCCATCATTCTTTCTCTTTCGAACCCAACTTCTCAGTCAGAATGTACGGCAGAAGAGG 1754
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 1501 AACCCATCATTCTCTCTCTTTCAAACCCAACTTCTCAGTCAGAATGTACGGCGGAACAGG 1560
Query 1755 CCTATACGTGGAGTCAGGGACGGGCGATCTTTGCAAGTGGAAGCCCATTTGCGCCAGTAG 1814
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1561 CCTATACGTGGAGTCAGGGACGGGCGATCTTTGCTAGTGGAAGCCCATTTGCGCCAGTAG 1620
Query 1815 AGTATGAGGGAAAGACGTTTGTGCCTGGACAGGCAAACAACGCATACATCTTCCCTGGGT 1874
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 1621 AGTATGAGGGAAAGACGTTTGTGCCTGGACAGGCGAACAATGCATACATCTTTCCTGGGT 1680
Query 1875 TTGGACTCGGGCTAATAATGTCAGGGACGATCCGTGTCCATGATGACATGCTTCTGGCAG 1934
||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 1681 TTGGACTGGGGCTAATAATGTCAGGGACCATCCGAGTCCATGATGACATGCTTTTGGCCG 1740
Query 1935 CATCAGAAGCTTTGGCTGAGGAACTGATGGAGGAACACTATGAGAAGGGGATGATATACC 1994
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CGTCAGAAGCTTTGGCTGAGGAACTGATGGAGGAACACTATGAGAAGGGGATGATATACC 1800
Query 1995 CTCCCTTCAGGAATATCAGAAAAATCTCAGCTCGTATTGCAGCTAAGGTGGCTGCCAAGG 2054
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1801 CTCCCTTCAGGAATATCAGAAAAATCTCGGCTCGTATTGCAGCTAAGGTGGCTGCCAAGG 1860
Query 2055 CCTACGAACTGGGACTGGCCACGAGGTTGCCTCAGCCCAAGGAGCTGGAGCAGTGTGCTG 2114
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CCTATGAACTGGGACTGGCCACGAGGTTGCCTCAGCCCAAGGAGCTGGAGCAGTGTGCTG 1920
Query 2115 AGAGCAGCATGTACAGCCCTTCGTATCGAAGCTACCGCTGAGGATAAGCTTAATCT 2170
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1921 AGAGCAGCATGTACAGCCCTTCTTATCGAAGCTACCGCTGAGGATAAGCTTAATCT 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93625822210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5