BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79760.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477295 jgi|Araly1|477295|fgenesh2_kg.2__2425__AT1G79760.1 1417 0.0
> Ahg477295 jgi|Araly1|477295|fgenesh2_kg.2__2425__AT1G79760.1
Length=1281
Score = 1417 bits (767), Expect = 0.0
Identities = 1053/1181 (89%), Gaps = 60/1181 (5%)
Strand=Plus/Plus
Query 1 ACAAAAATGGGAGTTTCCTCTCCCGACTTCCGAGCCCCTCCTCCGTCCCCGGTAGCATCC 60
||||||||||||| ||| ||||| |||| |||||||||||||| ||||| |||||||||
Sbjct 1 ACAAAAATGGGAGCTTCTTCTCCTAACTTTCGAGCCCCTCCTCCATCCCCCGTAGCATCC 60
Query 61 AGCCGCCGTGCCTCCTTCACGGCCAACGAAGACGTCCTCTCGGAGTTCCTGGACAAGTGT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCCGCCGGGCCTCCTTCACGGCCAACGAAGACGTCCTCTCGGAGTTCCTGGACAAGTGT 120
Query 121 GGTCGAGTCCCAAATCTTGTATTGCCCGATAAAGTCTTCCCCAAGCACACATTCCTTCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCGAGTCCCAAATCTTGTATTGCCCGATAAAGTCTTCCCCAAGCACACATTCCTTCTG 180
Query 181 AACCCTCCCACCTTCGATTTCCACCGGTTGGACTCCCTCTCGGCTCTGCTTGATGCCATC 240
|||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||
Sbjct 181 AACCCTCCCACCTTCGATTTCCTCCGGTTGGACTCCCTCTCGACCCTGCTGGATGCCATC 240
Query 241 GCCACCATCGGTTGTTTTCAGCTCGTTAACCACGGTGTTCCAGAGGCTATGGTGAAAGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCACCATCGGTTGTTTTCAGCTCGTTAACCACGGTGTTCCAGAGGCTATGGTGAAAGCC 300
Query 301 GCCATGGACAAAACCATTTTCCACGATGAGACGGAGGAGTTCGTGTTTAATAAAGATATT 360
| |||||||| |||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 301 GTCATGGACAGAACCATTTTCCACGATGAGACGGAGGAGTTTGTTTTTTATAAAGATATT 360
Query 361 AATGCTGATGATCACACGGCTTGTTATTCAGATTTGAGGGAGTTGATGGGTGAGGCAGAG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ---GCTGATGATCACACGGCTTGTTATTCAGATTTGAGGGAGTTGATGGGTGAGGCAGAG 417
Query 421 AGGATAGGGAAGGCGGTGAGAGAAAAGCTAGGAGCAGGAGGAAGAAGCCAAAAGGAAG-G 479
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 418 AGGATAGGGAAGGCGGTGAGAGAAAAGCTAGGAGCAGGA--A-GAAGCCAAAAGGAAGAG 474
Query 480 G--GTAGGGGTT----T--GCTACGTGAAGAGGCATAATATTAA----A--AA---CGAA 522
| | ||||||| | |||||||||| | ||||||||||| | || ||||
Sbjct 475 GAAGAAGGGGTTAGGGTTTGCTACGTGAATAAACATAATATTAAGGGTAGCAAAAACGAA 534
Query 523 TCAAAGGAAGAAGCCATAAGGATGCTGCTAAGAGGCTATGACGAAAGACATTCTCTATGT 582
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct 535 TCAAAGGAAGAAGCCATAAGGATGCTGATAAGAGGGTATGACGAAAGACATTCTCTGTGT 594
Query 583 CTCAACTTCTGCCATGCAGAGTTCCACGTCTACTCCAAAAGAGGTTGGGTCTCCTTCTCC 642
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 595 CTCAACTTCTGCCATGCAGAGTTCCACGTCTACTCCAAGAGAGGTTGGGTCTCCTTCTCC 654
Query 643 CCACGTCCCGATGCGGTGATCGTCACAATCGGAGATCAAGGCTGGAGCGGAAGATTCAAG 702
|||||||| ||||| ||| |||| || |||||||| ||||||||||||| |||||||||
Sbjct 655 CCACGTCCGGATGCTGTGGTCGTGACGGTCGGAGATGAAGGCTGGAGCGGCAGATTCAAG 714
Query 703 GGCGTTGTGGGGAGGCCCCTTCTTTACAAATCAGATCTTCATCACAATCTGATTTCCATA 762
|| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 715 GGTGTTGTGGGGAAGCCCCTTCTTTACAAATCAGATCTTCATCACAATCTCATTTCTATA 774
Query 763 TCCTTTCTCTACACTAGTA-CTACCACTCTCCACAACACAAGCAGAAAAATTACCAAAAG 821
||||||||||||||||||| | || | || | ||||||| |||||| ||||| ||||||
Sbjct 775 TCCTTTCTCTACACTAGTAAC-ACTAGTCACAACAACACCGGCAGAAGAATTATCAAAAG 833
Query 822 GACGAAGAAGAAGACCATTTCCCTCTTCCAACAGCTCCTCTTTGCTCTCTTTCTCACACT 881
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 834 GAAGAAGAAGAAGACCATTTCCCTCTCCCAACAGCTCCTCTTTGCTCTATTTCTCACACT 893
Query 882 CCTCTTCCCTTTTTTACTTCCTTGATCATTACATACTTGTTGCCTTGTTGCTCCtttttt 941
|||||||||||| ||| |||||||||||||||||||||||||| || || || ||
Sbjct 894 CCTCTTCCCTTTCTTATTTCCTTGATCATTACATACTTGTTGC-TT-TT-CT--TT---- 944
Query 942 cctttttttCTTTGGAAACTAAAATACAAGTG-GGTAATGTGTATCTCAATCTTGTTTAA 1000
||||||||||| |||| || || | ||||||||||||||||||||
Sbjct 945 -------------GGAAACTAAAAAACAATTGCGGCAGTGTGTATCTCAATCTTGTTT-- 989
Query 1001 TTTTAGCCTTTTTCCCAAGCAATGCATGG-CCCAATCATTCAGTTTAAAATCCCGCTATA 1059
| |||||||| |||| ||||||||||| |||||||||||| ||||||| ||| |||||
Sbjct 990 T---AGCCTTTTACCCA-GCAATGCATGGGCCCAATCATTCAATTTAAAAGCCCACTATA 1045
Query 1060 TCCAAATAACGATATTTGACCC-CT-CACCCATTCGGTTATCAATCTCATG-CCCAATCC 1116
||||||||| ||||| ||||| || |||||||||||||||||||||| | ||||||||
Sbjct 1046 TCCAAATAATGATATCTGACCTTCTTCACCCATTCGGTTATCAATCTCCTTTCCCAATCC 1105
Query 1117 ACTTGACACTGCGCAAGAATCACATAGATATATACTCTGAA 1157
| | ||||||||||| |||||| |||||||||||| |||||
Sbjct 1106 A-TCGACACTGCGCACGAATCAGATAGATATATACACTGAA 1145
Score = 124 bits (67), Expect = 1e-27
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 1205 AGCACATATCCACCTTCGAGTATTTCACTGCAAGAAA-CGTAACGTGT--ATATATATGC 1261
||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||
Sbjct 1146 AGCACATATCCACCTTCGAGTATTTCACTGCAAGAAAGCGTAACATTTACATATATATGC 1205
Query 1262 ACAGATTTGATGTATAGTAATGCTATGCAT 1291
|||||||||||||||| ||||| |||||||
Sbjct 1206 ACAGATTTGATGTATAATAATGTTATGCAT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5