BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79780.1

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316979 jgi|Araly1|316979|fgenesh1_pm.C_scaffold_2002012           933    0.0  


> Ahg316979 jgi|Araly1|316979|fgenesh1_pm.C_scaffold_2002012
Length=1092

 Score =  933 bits (505),  Expect = 0.0
 Identities = 549/570 (96%), Gaps = 3/570 (1%)
 Strand=Plus/Plus

Query  51    GGTTCGAATGACGAGTAATGGAGAAGGGGGAGAGGTGGTGGCGAAGAGGAGGAGGAAGGG  110
             ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |  |
Sbjct  525   GGTTCGAATGAGGAGAAATGGAGAAGGGGAAGAGGTGGTGGCGAAGAGGAGGAGG-A--G  581

Query  111   AATTAAGGAGCTAGTGCAGGTGGCTCTCAGGGGAGGTTGTTTGGCTGCTTCAGCCACGGC  170
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  582   AATTAAGGAGCTAGTGCAGGTGGCTCTCAGGGGAGGTTGCTTGGCTGCTTCAGCCACGGC  641

Query  171   CATGGCGGTGATGCTGACCGCTACTGAGGAGGGAGTGGCAGACATCTACGGCTTCAAGCT  230
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  642   CATGGCGGTGATGCTGACTGCTACTGAGGAGGGAGTGGCAGACATCTACGGCTTCAAGCT  701

Query  231   CACTCTCTCCTCCAACTGGTCTTTCTCTCCCTCCTACCAGTATGTGGTGGGGGCATGCGC  290
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  702   CACTCTCTCCTCCAACTGGTCTTTCTCTCCCTCCTACCAGTATGTGGTGGGGGCATGTAC  761

Query  291   AGGGACCGTGCTCTACTCCCTGTTACAGCTCTGCCTCGGTGTTTACAGACTCGTCACCGG  350
             |||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct  762   AGGGACCGTGCTCTACTCCCTGTTCCAGCTCTGTCTCGGTGTTTACAGACTCCTCACCGG  821

Query  351   ATCTCCCATCACGCCTTCCCGCTTCCAAGCTTGGCTTTGCTTCACCTCCGATCAGCTCTT  410
             |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  822   ATCTCCCATCACACCCTCCCGCTTCCAAGCTTGGCTTTGCTTCACCTCTGATCAGCTCTT  881

Query  411   TTGTTATTTGATGATGAGCGCTGGATCAGCCGGTTCCGGAGTTACCAACCTCAACAAAAC  470
             | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  882   TGGTTATTTGATGATGAGCGCTGGATCAGCCGGTTCTGGAGTTACCAACCTCAACAAAAC  941

Query  471   CGGCATCAGGCACACTCCTCTCCCCGACTTCTGCAAGACCCTTTCTTCTTTCTGCAATCA  530
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  942   CGGCATCAGGCACACTCCTCTCCCCGACTTCTGCAAGACCCTTTCTTCTTTCTGCAATCA  1001

Query  531   TGTCGCCCTGtctctcctcttagtcttcctctccttcatcttcctcgcttcctcttcctt  590
             ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1002  TGTGGCCCTGTCTCTCCTCTTAGTCTTCCTCTCCTTCATCTTCCTGGCTTCCTCTTCCTT  1061

Query  591   ctttactgtccttgtgctctccactccCTA  620
             ||| ||||||||||||||||||||||||||
Sbjct  1062  CTTCACTGTCCTTGTGCTCTCCACTCCCTA  1091



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22721258532


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5