BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79800.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg909736 jgi|Araly1|909736|Al_scaffold_0002_2817                    710    0.0  


> Ahg909736 jgi|Araly1|909736|Al_scaffold_0002_2817
Length=567

 Score =  710 bits (384),  Expect = 0.0
 Identities = 446/473 (94%), Gaps = 16/473 (3%)
 Strand=Plus/Plus

Query  1    atgatgatgatga-tgatgaGATCTACTTG---TAATCTAA-CACTAATGCTCTGCATTT  55
            ||||||||||| | | ||||||||| ||||   ||||||||  | ||||||| |||||||
Sbjct  4    ATGATGATGAT-ACTCATGAGATCTCCTTGTAATAATCTAATGA-TAATGCTGTGCATTT  61

Query  56   GTGCCCTTGTGGTGGCTTCCATGGCGGCGGAAGGTCCTAGGGATTTCAAGGTTGGAGACG  115
            ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  62   GTGCCCTTGTGGTGGCTTCCATGCCGGCGGAAGGTCCTAGGGTTTTCAAGGTTGGAGACG  121

Query  116  AGTTCGGGTGGAGAGTCCCACTCCAGAATGATTCAGCGGTTTACAGCCACTGGGCCAGCA  175
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  122  AGTTCGGGTGGAGAGTCCCACTCCAGAATGATTCAGCGCTTTACAGCCACTGGGCCAGCA  181

Query  176  GCAACCGCTTCCACATCGGTGATTCACTCTCGTTTGTGTACGACAAGGACTCGGTGATGG  235
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  182  GCAACCGCTTCCACATCGGTGATTCACTCTCGTTTGTGTACGACAAGGACTCAGTGGTGG  241

Query  236  AGGTAGACAAATGGGGTTTCTACCACTGCAACGGCAGCGATCCCATTACAGCCTTTGACA  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  AGGTAGACAAATGGGGTTTCTACCACTGCAACGGCAGCGATCCCATTACAGCCTTTGACA  301

Query  296  ATGGAAACAGCACATTCGACCTTGATCGTCCTGGTCTCTTCTACTTCATCAGCGGCTCCA  355
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  ATGGAAACAGCACGTTCGACCTTGATCGTCCTGGTCTCTTCTACTTCATCAGCGGCTCCA  361

Query  356  ACCAGCACTGCACCAGCGGCCAGCGTCTCATCGTAGAAGTCATGCATATCCACCAACACC  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  ACCAGCACTGCACCAGCGGCCAGCGTCTCATCGTAGAAGTCATGCATATCCACCAACACC  421

Query  416  ATGA---CCAT---GAC---GCTTCCATGCCTCCATCCATGTCGCCTCTTTCT  459
            ||||   ||||   |||   ||||||||||||||||||||||||||||| |||
Sbjct  422  ATGATGACCATCACGACAATGCTTCCATGCCTCCATCCATGTCGCCTCTCTCT  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5