BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79810.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477288 jgi|Araly1|477288|fgenesh2_kg.2__2418__AT1G79810.1 2130 0.0
Ahg477286 jgi|Araly1|477286|fgenesh2_kg.2__2416__AT1G79820.2 172 5e-42
> Ahg477288 jgi|Araly1|477288|fgenesh2_kg.2__2418__AT1G79810.1
Length=1381
Score = 2130 bits (1153), Expect = 0.0
Identities = 1313/1387 (95%), Gaps = 24/1387 (2%)
Strand=Plus/Plus
Query 144 AACTTTGCCTTGTTGTCTATCGCCGGAATTACAAACCCTAGCCCTGCTACACCGCCAATG 203
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AACTTTGCCTTGTTGTCTATTGCCGGAATTTCAAACCCTAGCCCTGCTACACCGCCAATG 60
Query 204 ACGCCGTCTACGCCT--G----CAGACGATGCTTGGATCCGCTCTTACCAGCGCTTGCTT 257
||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 61 ACGCCGTCTCCGCCTCCGCCTCCAGACGATGCTTGGATCCGCTCTTACCACCGCTTGCTT 120
Query 258 CCTGAATCGCAGTCTCTTCTCGCTTCCCGCCGGTCAGTTATACCGGTTGCAATCTCTAGA 317
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CCTGAATCGCAGTCTCTTCTCGCTTCCCGCCGGTCAATTATACCGGTTGCAATCTCTAGA 180
Query 318 GTGAATCAGTTCGACGCAGCACGACTAGATGTGGAAATGTCAGCCATGTTGAAGGAACAG 377
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GTGAATCAGTTTGACGCAGCACGACTAGATGTTGAAATGTCAGCCATGTTGAAGGAACAG 240
Query 378 CTCGTTAAGGTTTTCACTCTGATGAAGCCAGGAATGCTCTTTCAATACGAACCAGAGCTT 437
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CTGGTTAAGGTTTTCACTTTGATGAAGCCAGGAATGCTCTTTCAATACGAACCAGAACTT 300
Query 438 GATGCTTTCCTTGAGTTTCTCATTTGGAGATTCTCTATTTGGGTTGACAAACCCACCCCC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATGCTTTCCTTGAGTTTCTCATTTGGAGATTCTCTATTTGGGTTGACAAACCCACCCCC 360
Query 498 GGAAACGCTCTCATGAATCTTAGATACAGAGATGAACGAGGAGTCGTTG-CTCA--GCAC 554
||||| ||||||||||||||||||||||||||||||| ||||||| | | | | ||
Sbjct 361 GGAAATGCTCTCATGAATCTTAGATACAGAGATGAAC---GAGTCGTAGCCAAAGTGTAC 417
Query 555 T-TGGGGAAAGTCAGAACAGGACTGGAAGGACCCGGACTTACTTCTCCCCAAAAGATTTG 613
| | | | |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 418 TCT-CGTATAGTCAGAACAGGACTGGAAGGACCCGGACTTACTGCTCCTCAAAAGATTTG 476
Query 614 GTACTGCGTTGCCTCCGTTGGTGGTCAGTACCTCTTCTCCCGTTTGCAGTCATTTTCTGC 673
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTACTGTGTTGCCTCCGTTGGTGGTCAGTACCTCTTCTCCCGTTTGCAGTCATTTTCTGC 536
Query 674 TTTCCGTAGATGGGGTGATTCTGAGCAGAGACCATTGGCAAGGCGACTTTGGACCCTCGT 733
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 537 TTTCCGTAGATGGGGTGATTCTGAGCAGAGACCATTGGCTAGGCGACTTTGGACCCTCAT 596
Query 734 ACAACGAATCGAAGGCATCTACAAAGCTGCTTCTTTTCTTAACCTATTGTCATTTCTTTA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACAACGAATCGAAGGCATCTACAAAGCTGCTTCTTTTCTTAACCTATTGTCATTTCTTTA 656
Query 794 TACGGGAAGGTATAGGAACCTCATTGAAAAAGCTTTAAAAGCTAGGCTTGTCTATAGGAG 853
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TACGGGAAGGTACAGGAACCTCATTGAAAAAGCTTTAAAAGCTAGGCTTGTCTATAGGAG 716
Query 854 TCCCCATATGAACCGATCTGTCAGCTTCGAGTACATGAATCGGCAACTTGTGTGGAATGA 913
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 717 TCCCCATATGAACCGATCTGTCAGCTTCGAGTACATGAACCGCCAACTTGTGTGGAATGA 776
Query 914 ATTTTCGGAAATGCTTTTGTTGCTTCTCCCGCTGCTCAACTCTTCAGCTGTTAAGAATAT 973
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 777 ATTTTCGGAAATGCTTTTGTTGCTTCTTCCGCTGCTCAACTCTTCAGCTGTGAAGAATAT 836
Query 974 TCTTAGTCCATTTGCCAAGGACAAGTCCTCAAGCACTAAAGAGGATACAGTGACTTGCCC 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 837 TCTTAGTCCATTTGCCAAGGACAAGTCCTCAAGCACTAAAGAGGATACAGTGAATTGCCC 896
Query 1034 TATTTGCCAAGTGGATCCTGCAATTCCGTTTATAGCTCTGCCTTGTCAGCACAGGTACTG 1093
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 897 TATTTGCCAAGTGGATCCTGCAATTCCTTTTATTGCTCTGCCTTGTCAGCACAGGTACTG 956
Query 1094 TTACTACTGCATAAGGACCCGCTGCGCTTCAGCAGCATCGTTCCGGTGTCTTAGATGTAA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTACTACTGCATAAGGACCCGCTGCGCTTCAGCAGCATCGTTCCGGTGTCTTAGATGTAA 1016
Query 1154 CGAGCCTGTGGTTGCCATACAACGGGAAGGTGTTTCAAGTGGCAAATGAATGGAGGTGAC 1213
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 CGAGCCTGTGGTTGCCATACAACGGGAAGGTGTTTCAAGTGGCAAATGAAAGGAGGTGAC 1076
Query 1214 AAATTGTTGAGTCATGCCACCAAGTCTTGAAGAATAAGCAGATGCAATAGTGGAAGTGTA 1273
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 GAATTGTTGAGTCATGCCACCAAGTCTTGAAGAATAAGCAGCTGCAATAGTGGAAGTGTA 1136
Query 1274 AAAAGCCAAGGCAAGCAGCCGAAAGCAGAGAAGAATCTGATAGGTGTTTGTTTGCAGACA 1333
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1137 AAAAGCTAAGGCAAGCAGCCGAAAGCAGAGAAGAATCTGATAGGCGTTCGTTTGCAAACA 1196
Query 1334 GACTATACAATAAGGGAACATCAT-GAATGTGATGCAACaaaaaaaTT-AGATAGGTGCA 1391
| || ||||| ||||||||||||| || ||||||||| |||| ||||| |||||||| ||
Sbjct 1197 GGCTGTACAA-AAGGGAACATCATCGA-TGTGATGCAGCAAAGAAATTTAGATAGGTACA 1254
Query 1392 CTTCTGTACATGAGTTGAGAACCTACCA-T----TG-TTGAATGAAGTTTGGTCTTATGT 1445
||||||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 1255 TTTCTGTACATGAGTTGAGAACCTACCAATACCATTATTGAATGAAGTTGGGTCTTATGT 1314
Query 1446 TTATTACAAAATCAGTTGAAACGTTGGCTATACTCGAATGAATAATATCCATTTCCTTAC 1505
||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1315 TTACTATAAAATCAGTTGAAACGTCGGCTATACTTGAATGAATAATATCCATTTCCTTAC 1374
Query 1506 ATGTTGT 1512
|||||||
Sbjct 1375 ATGTTGT 1381
> Ahg477286 jgi|Araly1|477286|fgenesh2_kg.2__2416__AT1G79820.2
Length=1935
Score = 172 bits (93), Expect = 5e-42
Identities = 127/142 (89%), Gaps = 7/142 (5%)
Strand=Plus/Minus
Query 1397 GTACATGAGTTGAG-A---ACC--TACCATTGTTGAATGAAGTTTGGTCTTATGTTTATT 1450
|||||||||||||| | ||| ||||||| |||||||||||| ||||||||||||| |
Sbjct 1935 GTACATGAGTTGAGAACCTACCAATACCATTATTGAATGAAGTTGGGTCTTATGTTTACT 1876
Query 1451 ACAAAATCAGTTGAAACGTTGGCTATACTCGAATGAATAATATCCATTTCCTTACATGTT 1510
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1875 ATAAAATCAGTTGAAACGTCGGCTATACTTGAATGAATAATATCCATTTCCTTACATGTT 1816
Query 1511 GTTTACCTACTTACTACTCACT 1532
|| || |||||||||||||||
Sbjct 1815 GTGAAC-TACTTACTACTCACT 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5