BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79820.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477286 jgi|Araly1|477286|fgenesh2_kg.2__2416__AT1G79820.2 2743 0.0
Ahg477288 jgi|Araly1|477288|fgenesh2_kg.2__2418__AT1G79810.1 154 2e-36
> Ahg477286 jgi|Araly1|477286|fgenesh2_kg.2__2416__AT1G79820.2
Length=1935
Score = 2743 bits (1485), Expect = 0.0
Identities = 1667/1753 (95%), Gaps = 19/1753 (1%)
Strand=Plus/Plus
Query 89 GAGCGTGTTT-CCAGAGGGGATGGATTCTGTTCGACGCACTTACACCATTATGCGAGGTC 147
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 186 GAGCGTGTTTCCCA-AGGGGATGGATTCTGTTCGACGCACTTACACCATTATGCGAGGCC 244
Query 148 GTCACATAGACAAGCGTGTTCCTTCTAAAGAGTTTCTCTCTGCTTTGGATAAAGCTGAAA 207
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 245 GTCACATAGACAAGCGTGTTCCTTCTAAAGACTTTCTCTCTGCTTTGGATAAAGCTGAAA 304
Query 208 CTGCAGTACGTCTTCCTACTGGGACGGGAAAAGACTGCGGGAATCCTTCCTGGAAGCGAT 267
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 305 CTGCAGTACGTCTGCCTACTGGGACGGGAAAAGACAACGGGAATCCTTCCTGGAAGCGAT 364
Query 268 CTCTGCCTCACGTGCTCGTTGCTTCTCTGACTTCGCTTTTATTCGGCTATCATCTCGGGG 327
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 365 CTCTGCCTCACGTGCTCGTTGCATCCCTGACTTCTCTTTTATTCGGCTATCATCTCGGGG 424
Query 328 TTGTTAATGAAACTCTCGAAAGCATATCAATTGACCTTGGCTTTAGTGGGAACACCATAG 387
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 425 TTGTTAATGAAACTCTCGAAAGCATATCAATTGACCTTGGCTTTAGTGGAAACACCATCG 484
Query 388 CTGAAGGTCTTGTGGTTAGCACCTGCTTAGGCGGCGCCTTTATTGGGTCTCTGTTCAGTG 447
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 485 CTGAAGGTCTTGTGGTTAGCACGTGCTTAGGCGGCGCCTTTATTGGGTCTCTGTTTAGTG 544
Query 448 GGTTGGTAGCTGATGGTGTTGGGCGCCGTAGAGCTTTCCAGTTGAGCGCTTTACCAATGA 507
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 545 GGTTGGTAGCGGATGGTGTTGGGCGCCGTAGAGCTTTCCAGTTGAGCGCTCTACCCATGA 604
Query 508 TTGTTGGAGCTTCTGTGAGTGCATCAACTGAGAGTCTT-ATGGGCATGCTCCTGGGAAGG 566
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 605 TTGTTGGAGCTTCAGTGAGTGCATCAACTGAGAGTCTTGA-GGGCATGCTCCTGGGAAGG 663
Query 567 TTTTTGGTCGGAATTGGGATGGGCATAGGTCCTTCTGTTACAGCTCTCTATGTCACTGAG 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 664 TTTTTGGTCGGAATTGGGATGGGCATAGGTCCTTCTGTTACGGCTCTCTATGTAACTGAG 723
Query 627 GTGTCACCTGCTTATGTGAGAGGTACATATGGGAGTTCTACCCAAATCGCAACATGTATT 686
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 724 GTGTCACCTGCTTATGTGAGAGGTACATATGGGAGTTCTACCCAAATCGCCACATGTATT 783
Query 687 GGACTCTTAGGTTCGCTGTTTGCTGGAATCCCGGCAAAAGATAACTTGGGCTGGTGGCGC 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGACTCTTAGGTTCGCTGTTTGCTGGAATCCCGGCAAAAGATAACTTGGGCTGGTGGCGT 843
Query 747 ATATGTTTTTGGATATCCACAGTCCCAGCTGCAATGCTTGCTGTCTTCATGGAACTCTGC 806
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 844 ATATGTTTTTGGATATCCACAGTCCCAGCCGCAATGCTTGCTGTCTTCATGGAACTCTGC 903
Query 807 GTGGAAAGTCCTCAGTGGCTTTTTAAGAGGGGAAGGGCAGCTGAAGCTGAAGCTGTGTTT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 904 GTGGAAAGTCCTCAGTGGCTTTTTAAGAGGGGAAGGGCAGCTGAAGCTGAAGCCGTGTTT 963
Query 867 GAGAAGCTATTGGGAGGGTCGTACGTCAAAGCTGCTATGGCAGAGTTAGTGAAGTCGGAT 926
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 964 GAGAAGCTATTGGGAGGGTCATACGTCAAAGCTTCTATGGCAGAGTTAATGAAGTCGGAT 1023
Query 927 AGGGGAGATGACGCCGATTCAGCCAAATTGTCGGAGTTGCTTTTTGGACGCAGTTTTAGA 986
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1024 AGGGGAGATGACGCGGATTCAGCCAAATTGTCGGAGTTGCTTTTCGGGCGCAGTTTTAGA 1083
Query 987 GTGGTTTTCATTGGATCTACCCTTTTTGCTTTACAACAGTTGTCTGGGATAAATGCTGTG 1046
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1084 GTGGTTTTCATTGGATCTACCCTTTTTGCTTTACAACAGTTGTCGGGGATAAACGCTGTG 1143
Query 1047 TTCTATTTCTCATCAACTGTCTTCAAGAAAGCTGGTGTACCTTCAGCCTCTGCAAACATA 1106
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TTCTATTTCTCATCAACCGTCTTCAAGAAAGCTGGTGTACCTTCAGCCTCTGCAAACATA 1203
Query 1107 TGTGTAGGAGTTTGCAACCTCTTAGGATCAACTGTTGCTGTGGTTTTGATGGATAAGCTG 1166
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1204 TGTGTAGGAGTTTGCAACCTCTTAGGTTCAACTGTAGCGGTGGTTTTGATGGATAAGCTG 1263
Query 1167 GGGAGAAAAGTGTTGCTTATTGGGAGTTTTGCGGGCATGGCAGTATCGCTGGGTCTCCAA 1226
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1264 GGGAGAAAAGTGTTGCTTATTGGGAGTTTTGCAGGCATGGCAGTATCGCTGGGTCTCCAA 1323
Query 1227 GCAATAGCATATACTTCGCTTCCTTCGCCCTTTGGAACCTTGTTTCTCTCGGTTGGAGGA 1286
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||
Sbjct 1324 GCAATAGCATATACTTCGCTTTCATCGCCCTTTGGAACCTTGTTTCTCTCAGTTGGTGGA 1383
Query 1287 ATGCTGCTGTTTGTGTTGTCGTTTGCAACTGGAGCGGGTCCTGTTCCAAGTCTTCTCCTG 1346
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1384 ATGCTACTGTTTGTGTTGTCGTTCGCAACTGGAGCTGGTCCTGTTCCAAGTCTTCTCCTG 1443
Query 1347 TCTGAGATATGCCCTGGTCGACTTCGAGCAACTGCGTTGGCTGTTTGTCTTGCCGTTCAC 1406
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 1444 TCTGAGATATGCCCTGGTCGACTTCGGGCAACAGCGTTGGCCGTTTGTCTTGCTGTTCAC 1503
Query 1407 TGGGTTATAAACTTCTTTGTCGGGCTGCTGTTTCTGAGAATGCTGGAGCAACTAGGTTCG 1466
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1504 TGGGTAATAAACTTCTTTGTGGGGTTGCTGTTTCTGAGAATGCTGGAGCAACTAGGTTCG 1563
Query 1467 GTGCTTCTAAATGCAATATTTGGGTTCTTCTGTGTGGTGGCAGTCATCTTTGTGCAGAAG 1526
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GTGCTTCTAAATGCAATCTTTGGGTTCTTCTGTGTGGTGGCAGTCATCTTTGTGCAGAAG 1623
Query 1527 AACGTGGTTGAGACTAAAGGAAAGAGCCTACAAGAGATAGAAATCAGTCTGCTCTCTTCC 1586
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1624 AACGTGGTTGAGACTAAAGGAAAGAGCCTCCAAGAGATAGAAATCAGTCTGCTCTCTTCC 1683
Query 1587 ACCCAGTGAT------TGATCTCTTTATTCTGAGAATTCGTATTATTCTTCTGGCTCTCt 1640
|||||||||| |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1684 ACCCAGTGATACCCAGTGATCTCTTTATGCAGATAATTCGTATTATTCTTCTGGCTCTCT 1743
Query 1641 ttttttCCTTGGAGAGACACAAGTAACGTGTAC--CTAATATGGAAGTAGGAGTGAGTAG 1698
|||||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1744 TTTTTTCCTTGGAGGGATACAAGTAAAATGTACTACTAGTATGGAAGTAGGAGTGAGTAG 1803
Query 1699 TAAGTAGGTAAACAACATGTAAGGAAATGGATATTATTCATTCGAGTATAGCCAACGTTT 1758
||||||| | | ||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1804 TAAGTAGTTCA-CAACATGTAAGGAAATGGATATTATTCATTCAAGTATAGCCGACGTTT 1862
Query 1759 CAACTGATTTTGTAATAAACATAAGACCAAACTTCATTCAACAATGGTA--GGT---T-C 1812
||||||||||| || ||||||||||||| |||||||||||| ||||||| ||| | |
Sbjct 1863 CAACTGATTTTATAGTAAACATAAGACCCAACTTCATTCAATAATGGTATTGGTAGGTTC 1922
Query 1813 TCAACTCATGTAC 1825
|||||||||||||
Sbjct 1923 TCAACTCATGTAC 1935
> Ahg477288 jgi|Araly1|477288|fgenesh2_kg.2__2418__AT1G79810.1
Length=1381
Score = 154 bits (83), Expect = 2e-36
Identities = 110/122 (90%), Gaps = 6/122 (5%)
Strand=Plus/Minus
Query 1710 ACAACATGTAAGGAAATGGATATTATTCATTCGAGTATAGCCAACGTTTCAACTGATTTT 1769
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1381 ACAACATGTAAGGAAATGGATATTATTCATTCAAGTATAGCCGACGTTTCAACTGATTTT 1322
Query 1770 GTAATAAACATAAGACCAAACTTCATTCAACAATGGTA--GGT---T-CTCAACTCATGT 1823
|| ||||||||||||| |||||||||||| ||||||| ||| | ||||||||||||
Sbjct 1321 ATAGTAAACATAAGACCCAACTTCATTCAATAATGGTATTGGTAGGTTCTCAACTCATGT 1262
Query 1824 AC 1825
||
Sbjct 1261 AC 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5