BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79850.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477281 jgi|Araly1|477281|fgenesh2_kg.2__2411__AT1G79850.1 933 0.0
> Ahg477281 jgi|Araly1|477281|fgenesh2_kg.2__2411__AT1G79850.1
Length=604
Score = 933 bits (505), Expect = 0.0
Identities = 575/608 (95%), Gaps = 7/608 (1%)
Strand=Plus/Plus
Query 3 TTCATCGATTCGATTCCAAATCGGAAGGATGATAACGTCGTCCCTAACCTCATCTCTGCA 62
|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 1 TTCATCGATTCGATTCCAAATCGG-AGGATG---ACGTCGTCCCTCACCTCATCTCTGCA 56
Query 63 AGCTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCctctctcatctctctctAA 122
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 57 AACTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCCACTCTCATCTCTCTCTAA 116
Query 123 GCCCAATTCCTTCCCGAACCACAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCCATGAA 182
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 117 GCCCAACTCCTTCCCGAACCATAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCGATGAA 176
Query 183 AACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGGT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGAC 236
Query 243 GAGGCTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGC 302
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGACTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGC 296
Query 303 TCACGACCCCGATAATCAGTTCAAGGTTGGCGACGTGGTCAGACTGGAAAAGAGCAGACC 362
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 297 TCATGACCCCGATAATCAGTTCAAGGTTGGCGACGTTGTCAGGCTGGAAAAGAGCAGACC 356
Query 363 CATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCATCGCAAGGGCCGCCAGGAAAGC 422
||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||
Sbjct 357 CATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCGTCCCTAGGGCCGCTGGGAAAGC 416
Query 423 CGAAGCCGGAGGAGATGAACTCCTTGGCCTTCCCTTGGAGTCTCAGCAGCCGGCGTAGAG 482
||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CGAAGCCGGAGCAGGTGACCTCCTTGGCATTCCCTTGGAGTCTCAGCAGCCGGCGTAGAG 476
Query 483 AAT-GATTGCTCTTTGTTTCTTTTGGTAAAGCCGTCttttttttGCTCTGCTTCTGTTTG 541
| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 ACTTGATTGCTCTTTGTTTCTTTTGGTAAAGCTGTCTTTTTTTTGCTCTGCTTCTGTTTG 536
Query 542 TTTGTTGTGTATCCCG--GAACCAGTGTAATTTATGGAATGCTTTTGTGATTTCATTGCT 599
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTGTTGTGTATCCCCCCGAACCTGTGTAATTTATGGAATGCTTTTGTGATTTCATTGCT 596
Query 600 TATGCCAT 607
||||||||
Sbjct 597 TATGCCAT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5