BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79860.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477280 jgi|Araly1|477280|fgenesh2_kg.2__2410__AT1G79860.1 2608 0.0
Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 180 4e-44
> Ahg477280 jgi|Araly1|477280|fgenesh2_kg.2__2410__AT1G79860.1
Length=1647
Score = 2608 bits (1412), Expect = 0.0
Identities = 1560/1632 (96%), Gaps = 8/1632 (0%)
Strand=Plus/Plus
Query 5 TCTCAAGAGAGGCCCATTTGATCctctctctttctctctctctcctctctaattctctAT 64
||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||| |
Sbjct 1 TCTCAAGAGAGGCCCTTTTGAT-C-CTCTCTATCTCTCTCTCTCCTCTCTAATTCTCTCT 58
Query 65 TGCCATCAAGAGACCAGGAATGGTTCGTGCTTCGGAACAAGAACAGGAAACCTATAGGAG 124
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 59 TGCCATCAAGAAACCAGGAATGGTTCGTGCCTCGGAACAAGAACAGGAAAGCTATAGGAG 118
Query 125 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CAGGCTCTTCAATTTCAAATGGAGGAACAACGACAACAATAGTGCTACGAGACACAACAA 178
Query 185 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCCCATGACGCTGAACC 244
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 179 GAGTCTCAGCGTCGAGACCGGTTTAGATGAGGCTGCCACCGGATCTCATGGCGCTGAACC 238
Query 245 ATTGACCATTATTCATCCTAGTCAGGGTCCACCACTTTCAAGATCGGCTGCGGATGAAGC 304
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 239 GTTGACCATAATTCATCCTAGTCAGGGTCCCCCACTTTCAAGATCAGCTGCGGATGAAGC 298
Query 305 AGTC-CTCGCCGCCCTCGCCGCCTCACAGGCTAGAGAAAGGCAGCTTTTGGCAGACATGG 363
|| | || |||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 299 AG-CACTGGCCGCCCTTGCCGCCGCACAGGCTAGAGAAAAGCAGCTTTTGGCAGACATGG 357
Query 364 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCAGATGAAAGAGCGCTTCTCCAAGCTGTTGCTGGGAGAGGACAATTCCGGTGGAGGCA 417
Query 424 AAGGAGTATCCTCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 483
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGGAGTATCATCTGCTCTCGCCCTTTCAAACGCAATCACAAACCTTGCAGCTTCCGTGT 477
Query 484 TCGGAGAGCAACGGCGCTTGGAGCCAATGCCTGCAGAAAGAAGAGCAAGATGGAGAAAAG 543
||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 478 TCGGAGAGCAACGTCGCTTGGAGCCAATGCCTGCAGAGAGGAGAGCCAGATGGAGAAAAG 537
Query 544 AGATTGATTGGCTTCTCTCCGTGACCGATTACGTGGTTGAGTTTGCTCCATCTCAGCAGA 603
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 538 AGATCGATTGGCTTCTCTCCGTGACCGAGTACGTTGTTGAGTTTGCTCCATCTCAGCAAA 597
Query 604 AAAATAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAAATAAAGATGGGACCAATATGGAGATAATGACCACACGCCAACGTACTGACCTCCACA 657
Query 664 TGAATATCCCCGCATTGAAGAAACTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 723
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 TGAATATCCCCGCATTGAAGAAATTGGACGCCATGCTCATCGATTGTCTAGAAAATTTCA 717
Query 724 AGGACCAAAGCGAGTTCAGCTATATCTCAAAAGACTCCCCTGACTTAGACGGTAAGAGAA 783
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 718 AGGACCAAAGCGAGTTCAGCTATGTCTCAAAAGACTCCCCAGACTCAGACGGTAAGAGAA 777
Query 784 ACGACGAAAAATGGTGGATTCCGACCGTCAAAGTT-CCACCAGATGGTCTATCAGAAGCT 842
||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 778 ACGACGACAAATGGTGGATTCCGACCGTCAAAGTTGCC-CCAGATGGTCTATCAGAAGCT 836
Query 843 TCAAGAAGGTTTTTGCAGTACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 902
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCAAGAAGGTTCTTGCAATACCAGAAAGATTGTGTAAACCAGGTTCTAAAGGCAGCCATG 896
Query 903 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCTGAGAGCTACATCGACTCTCTC 962
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 GCCATAAACGCACAGGTTTTGTTCGAGATGGAGATACCAGAGAGCTACATCGACTCTCTC 956
Query 963 CCAAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1022
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CCCAAGAACGGGAGGGCGAGTCTCGGGGATCAGATGTACAAGAATATAACGGTGGACTTC 1016
Query 1023 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTGGAC 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 TTTGACCCGGACCAGTTCCTGAGCAGCATGGACATGTCGTCGGAGCACAAGATCGTCGAC 1076
Query 1083 CTCAAAAACAGAATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1142
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTCAAAAACAGGATCGAGGCATCAATCATTATATGGAAACGCAAAATGGTTTATAAAGAC 1136
Query 1143 AACAAATCATCGGCACCCTGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTCTTCGAA 1202
| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 AGCAAATCATCGGCACCATGGGCCTCCGGAGTAAGTCTGGAGAAGCGAGAGGTTTTCGAG 1196
Query 1203 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCCGGGATTTCTCAATCT 1262
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1197 GAGCGAGCTGAGACCATTTTGCTCATTCTCAAGCAAAGATACCCTGGGATATCTCAGTCG 1256
Query 1263 TCACTCGACATCAGCAAAATCCAGTTCAACGAGGACGTGGGCCAGGCGGTGCTGGAGAGC 1322
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 1257 GCACTCGACATCAGCAAAATCCAGTTCAACAAGGACGTGGGTCAAGCGGTGCTGGAGAGC 1316
Query 1323 TACTCGAGAATACTGGAAAGCTTGGCCTACACGGTACTTTCCAGAATCGATGACGTTTTA 1382
||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1317 TACTCGAGAATACTGGAGAGCTTGGCGTACACGGTACTGTCGAGAATCGATGACGTTTTA 1376
Query 1383 GAGGCAGATCGAGCGGGGAACAAGAGGAACACGCC-ATTGGAAGCAGAGGAAGAGACGCT 1441
||||||||||||||||||| ||||||||||||||| || |||| ||||||| ||||||||
Sbjct 1377 GAGGCAGATCGAGCGGGGAGCAAGAGGAACACGCCGAT-GGAATCAGAGGACGAGACGCT 1435
Query 1442 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGCGAACGC 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1436 GGTTGGGAGCATGACGCTGTCGGATTTCATGGGATGGGACTTCGATCAGGCCGGGAACGC 1495
Query 1502 CGAATTGGAGTCGAAGAAGGATCTACCGGATGATCCGTTGATAAAGGAGAAGCTAAGCGT 1561
||| ||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||
Sbjct 1496 CGACTTGGAGTCGAAGAGGGATCTATCGGATGATCCGTTGGTGAAGGAGAAGCTAAGCGT 1555
Query 1562 CGTCACGACCAAGAAGACCTCATACCTCGAAACCCTAGGCGGTGTCAAGAGTCCAACGGC 1621
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1556 CGTCACGACCAAGAAGACATCATACCTCGAAACCCTAGGCGGCGTCAAGAGTCCAACGGC 1615
Query 1622 ACGGCATTGATA 1633
|||||||||||
Sbjct 1616 GCGGCATTGATA 1627
> Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183
Length=1575
Score = 180 bits (97), Expect = 4e-44
Identities = 771/1081 (71%), Gaps = 107/1081 (10%)
Strand=Plus/Plus
Query 354 GCAGACATGGAGCA-GATGAAAGAGC-GCTTCTCCAAGCT-GTTGCTGGGAGAGGACAAT 410
||||| |||||| | ||||||||| | | ||| | || | || || ||||| || ||
Sbjct 250 GCAGATATGGAG-ATGATGAAAGA-CAGGTTCGCGAAATTACTT-CTTGGAGAAGA-TAT 305
Query 411 -TCCGGTGGAGGCAAAGGAGTATCCTCTGCTCTCGCCCTTTCAAACGCAATCACAAACCT 469
|||||||| || ||||| ||||| |||||||| |||||||| || || |||||||| ||
Sbjct 306 GTCCGGTGGCGGGAAAGGTGTATCTTCTGCTCTGGCCCTTTCCAATGCTATCACAAATCT 365
Query 470 TGCAGCTTCCGTGTTCGGAGAGC-AACGGCGCTTGGAGCCAATGCCTGC-AGAAAGA-AG 526
||| || || | ||||| || | ||| || | |||| ||||| || ||| ||| |
Sbjct 366 TGCTGCGTCTATATTCGGGGAACAAACAAAGC-TACAGCCGATGCC-GCAAGATAGACA- 422
Query 527 AGCAAGATGG-AGAAAAGAGATTGATTGGCTT-CTCTCCGTGACCGATTACGTGGTTGAG 584
|| || ||| || |||||||| |||||| || | || ||||||||| || | || |||
Sbjct 423 AGTGAGGTGGAAG-AAAGAGATCGATTGG-TTATTGTCTGTGACCGATCACATTGTCGAG 480
Query 585 TTTGCTCCATCTCAGCAGAA-AAATAAAGATGGGACCAAT--A-TGGAGATAATGACCAC 640
|||| ||| ||||| || || | ||||| ||| | | | ||||| ||| ||
Sbjct 481 TTTGTTCCTTCTCAACA-AACGAGCAAAGA-AGGA-GTTTGCACT-GAGATTATGGTGAC 536
Query 641 ACGCCAACGTA-CTGACCTCCACATGAATATCCCCGC-ATT-GAAGAAACTGGACGCCAT 697
| | ||| | | ||| || | ||||| || || || || | | ||||| ||||||||
Sbjct 537 AAGACAAAG-AGGTGATCTTCTTATGAACATTCCAGCTCTTCG-A-AAACTCGACGCCAT 593
Query 698 GCTCATCGAT-TGTCTAGAAAATTTCA-AGGACCA-AAGCGAGTTCAGCTATATCTCAAA 754
|||||||||| | | || ||||||| |||| || || |||||| | ||| |||| |
Sbjct 594 GCTCATCGATACAT-TGGACAATTTCAGAGGA-CACAA-CGAGTTTTGGTATGTCTCTAG 650
Query 755 AGACTCCCCTG-A---C-TTAGACG-GTAA-GA---GA-AACGACGAAAAATGGTGGATT 803
||| || | | | || || | || || || || |||| ||||||||| |
Sbjct 651 AGATTCAGAAGAAGGGCAGCAGGCGAGGAATGATCGGACAA--ACGACAAATGGTGGCTA 708
Query 804 CCGACC-GTCAAAGTTCC-ACCAGATGGTCTATCAG-A--AGCTTC-AAGAAGGTTTTTG 857
|| || || |||||||| || || ||| |||| | | ||| || |||| | |||
Sbjct 709 CC-TCCGGTTAAAGTTCCTCCCGGA-GGTTTATCTGAACCAGC-TCGGAGAATG-CTTT- 763
Query 858 CAGTACCAGAAAGATTGTGTAAAC-CAGGTTCTAAAGGCAGCCATGGCCATAAACGCACA 916
| | ||| ||||||| || || ||||||| ||| || || ||||| || || || ||
Sbjct 764 -ACTTCCAAAAAGATTCAGT-CACACAGGTTCAAAAAGCTGCAATGGCTATCAATGCTCA 821
Query 917 GGTTTTGTTC-GAGATGG-AGATACCTGAGAGCTACATCGACTCTCTCCCAAAGAACGGG 974
|| | ||| || |||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 822 AGTCCT-TTCAGAAATGGCA-ATACCTGAGAGCTACATCGACTCTCTCCCTAAGAACGGA 879
Query 975 AGGGCGAGTCTCGGGGAT-CAGATGTACAAGAATATAACGGTGGACTTCTTTGACCCGGA 1033
|| || || ||||||||| | ||| ||||||| ||||| | ||| | ||||| |||||
Sbjct 880 AGAGCCAGCCTCGGGGATTC-GATCTACAAGAGCATAACAGAGGAGTGGTTTGATCCGGA 938
Query 1034 CCAGTTCCTGAGC-A-GCATGGACATGTCGTCGGAGCACAA-GATCGT-GGACCTCAAAA 1089
|||||| | | | | | ||||| ||||| | || ||||| | | || ||| | || |
Sbjct 939 GCAGTTCTT-ATCGATGT-TGGACTTGTCGACAGAACACAAAG-T-GTTGGATTTGAAGA 994
Query 1090 ACAGAATCGAGGCATCAATCATT-ATATGGAA-ACGCAAAATGGTTTATA-AA-G-ACAA 1144
| || || |||||||| | | | || ||||| | | || | || | | || | |||
Sbjct 995 ATAGGATTGAGGCATCTGT-AGTGATTTGGAAGAGG-AA---GCTTCACACAAAGGACAC 1049
Query 1145 CAAATCATCGGCACCCTGGGCCTCCGGAGTAAGTCT-GGAGAAGCGAGAGGTCTTCGAAG 1203
|||||| || |||| ||| | ||| || || ||||||| |||| | |||||||
Sbjct 1050 CAAATCTTCT------TGGGGCTCAGCAGTTAG-CTTGGAGAAGAGAGAATTGTTCGAAG 1102
Query 1204 AGCGAGCTGAGACCATTTT-GCTCATT-CTCAAGCAAAGATACCCCGGGATTTCTCAATC 1261
|| |||| || || || || | || || || || |||| || ||||| || |||||||
Sbjct 1103 AGAGAGCAGAAACAATCTTAG-TC-TTGCTTAAACAAAAATTTCCCGGTCTTCCTCAATC 1160
Query 1262 TTCACTCGACATCAGCAAA-ATCCAGTTCAACGAGGACGT-GGGCCAGGCGGTGCTGGAG 1319
||| || ||||| | | || || ||||| ||| ||||||| |||| || ||||| |||||
Sbjct 1161 TTCCCTTGACAT-ATCCAAGATTCAGTTTAACAAGGACGTTGGGCAAG-CGGTGTTGGAG 1218
Query 1320 AGCTACTCGAGAATACTGGAAAGCTTGGCCTACACGGT-ACTTTCCAGAATCGATGACGT 1378
|| ||||| || ||||| || |||||||| || || || | | || ||||| || || ||
Sbjct 1219 AGTTACTCTAGGATACTTGAGAGCTTGGCTTATACAGTGA-TGTCAAGAATAGAAGATGT 1277
Query 1379 T 1379
|
Sbjct 1278 T 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5