BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79870.1 Length=1166 Score E Sequences producing significant alignments: (Bits) Value Ahg477279 jgi|Araly1|477279|fgenesh2_kg.2__2409__AT1G79870.1 1563 0.0 > Ahg477279 jgi|Araly1|477279|fgenesh2_kg.2__2409__AT1G79870.1 Length=967 Score = 1563 bits (846), Expect = 0.0 Identities = 929/969 (96%), Gaps = 5/969 (1%) Strand=Plus/Plus Query 49 ATGGAATCAATCGGAGTCCTTATGATGTGCCCCATGTCCTCCTACCTCGAGAACGAGCTT 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAATCAATCGGAGTCCTTATGATGTGCCCCATGTCCTCCTACCTCGAGAACGAGCTT 60 Query 109 GAGAAGCGCTTCAACCTTCTTCGCTTCTGGACTTCTCCGGAGAAATCCGTCCT-CCTAGA 167 |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| Sbjct 61 GAGAAGCGCTTCAACCTTCTTCGCTTCTGGACTTGTCCGGAGAAATCCG-CCTTCCTAGA 119 Query 168 AACTCATCGGAACTCCATCCGCGCCGTCGTTGGGAATGCTTCTGCCGGCGCCGATGCTCA 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AACTCATCGGAACTCCATCCGCGCCGTCGTTGGGAATGCTTCTGCCGGCGCCGATGCTCA 179 Query 228 GCTCATCAGCGATCTGCCCAACCTTGAGATTGTATCCAGCTTCAGCGTCGGGCTCGACAA 287 |||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||| Sbjct 180 GCTCATCAACGATCTGCCCAAGCTTGAGATCGTCTCCAGCTTCAGCGTCGGGCTCGACAA 239 Query 288 GATCGATTTGGGGAAATGCAAAGAAAAAGGGATCCGCGTCACCAACACCCCCGACGTTCT 347 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 GATCGATTTGGGGAAATGCAAGGAAAAAGGGATCCGCGTCACCAACACCCCCGACGTTCT 299 Query 348 CACCGAAGACGTCGCAGATCTCGCCATCGGGCTTATCCTGGCTCTCCTTCGACGGCTGTG 407 |||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct 300 CACCGAAGACGTCGCAGATCTCGCGATCGGGCTTATCCTCGCTCTCCTTCGAAGGCTGTG 359 Query 408 TGAGTGCGATCGCTATGTAAGGAGCGGAAAATGGAAGCAAGGTGAATTCCAACTCACTAC 467 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 360 TGAGTGCGATCGCTATGTCAGGAGCGGAAAATGGAAGCAAGGTGACTTCCAACTCACTAC 419 Query 468 CAAGTTTAGTGGAAAATCCGTGGGGATCATTGGTCTAGGTAGAATTGGGACTGCCATCGC 527 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 420 CAAGTTTAGTGGAAAATCCGTGGGCATCATTGGCCTAGGTAGAATTGGGACTGCCATCGC 479 Query 528 AAAGAGGGCTGAAGCCTTTAGCTGCCCAATCAATTACTACTCAAGAACCATTAAGCCTGA 587 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 480 AAAGAGGGCTCAAGCCTTTAGCTGCCCAATCAATTACTACTCAAGAACCGTTAAGCCTGA 539 Query 588 TGTCGCC-TACAAGTATTATCCGACGGTGGTTGACCTTGCTCAAAACTCAGACATCCTCG 646 ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 540 TGT-GCCCTACAAGTATTATCCAACGGTGGTTGACCTTGCTCAAAACTCAGACATCCTCG 598 Query 647 TCGTCGCATGCCCGTTGACCGAGCAGACCAGACACATTGTGGACCGGCAGGTCATGGATG 706 | || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 599 TTGTGGCATGCCCCTTGACCGACCAGACCAGACACATTGTGGACCGGCAGGTCATGGATG 658 Query 707 CATTAGGAGCTAAGGGCGTCCTCATAAACATTGGCCGTGGACCACATGTTGATGAGCAAG 766 |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 659 CATTAGGACCTAAGGGTGTGCTCATAAACATTGGCCGTGGACCACATGTTGATGAGCAAG 718 Query 767 AGCTTATTAAAGCTCTAACAGAAGGCCGCCTAGGTGGGGCTGCCCTTGATGTGTTTGAGC 826 ||||| | ||||||||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 719 AGCTTGTCAAAGCTCTAACAGAAGGACGCCTAGGTGGGGCTGCGCTCGATGTGTTTGAGC 778 Query 827 AGGAGCCTCACGTGCCCGAGGAGCTCTTTGGCCTTGAGAATGTAGTTCTCCTCCCTCACG 886 | ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 779 ATGAGCCTCACGTGCCCGAGGAGCTATTTGGCCTTGAGAATGTGGTTCTCCTGCCTCACG 838 Query 887 TTGGGAGTGGCACTGTGGAAACACGGAATGCCATGGCCGATCTTGTCGTGGGTAACTTGG 946 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 839 TTGGGAGTGGCACTGTGGAAACACGGAATGCCATGGCCGATCTTGTGGTGGGTAACTTGG 898 Query 947 AAGCGCACTTTTCTGGGAAATCACTTCTGACTCCGGTCGTCTGAGTCATG-TGACACATT 1005 |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 899 AAGCACACTTTTCTGGGAAATCACTTCTGACTCCGGTCGTCTGAGTGATGATGACACATT 958 Query 1006 TGGGATTTG 1014 ||||||||| Sbjct 959 TGGGATTTG 967 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43498248297 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5