BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79870.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477279 jgi|Araly1|477279|fgenesh2_kg.2__2409__AT1G79870.1 1563 0.0
> Ahg477279 jgi|Araly1|477279|fgenesh2_kg.2__2409__AT1G79870.1
Length=967
Score = 1563 bits (846), Expect = 0.0
Identities = 929/969 (96%), Gaps = 5/969 (1%)
Strand=Plus/Plus
Query 49 ATGGAATCAATCGGAGTCCTTATGATGTGCCCCATGTCCTCCTACCTCGAGAACGAGCTT 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCAATCGGAGTCCTTATGATGTGCCCCATGTCCTCCTACCTCGAGAACGAGCTT 60
Query 109 GAGAAGCGCTTCAACCTTCTTCGCTTCTGGACTTCTCCGGAGAAATCCGTCCT-CCTAGA 167
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 61 GAGAAGCGCTTCAACCTTCTTCGCTTCTGGACTTGTCCGGAGAAATCCG-CCTTCCTAGA 119
Query 168 AACTCATCGGAACTCCATCCGCGCCGTCGTTGGGAATGCTTCTGCCGGCGCCGATGCTCA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACTCATCGGAACTCCATCCGCGCCGTCGTTGGGAATGCTTCTGCCGGCGCCGATGCTCA 179
Query 228 GCTCATCAGCGATCTGCCCAACCTTGAGATTGTATCCAGCTTCAGCGTCGGGCTCGACAA 287
|||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 180 GCTCATCAACGATCTGCCCAAGCTTGAGATCGTCTCCAGCTTCAGCGTCGGGCTCGACAA 239
Query 288 GATCGATTTGGGGAAATGCAAAGAAAAAGGGATCCGCGTCACCAACACCCCCGACGTTCT 347
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATCGATTTGGGGAAATGCAAGGAAAAAGGGATCCGCGTCACCAACACCCCCGACGTTCT 299
Query 348 CACCGAAGACGTCGCAGATCTCGCCATCGGGCTTATCCTGGCTCTCCTTCGACGGCTGTG 407
|||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 300 CACCGAAGACGTCGCAGATCTCGCGATCGGGCTTATCCTCGCTCTCCTTCGAAGGCTGTG 359
Query 408 TGAGTGCGATCGCTATGTAAGGAGCGGAAAATGGAAGCAAGGTGAATTCCAACTCACTAC 467
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGAGTGCGATCGCTATGTCAGGAGCGGAAAATGGAAGCAAGGTGACTTCCAACTCACTAC 419
Query 468 CAAGTTTAGTGGAAAATCCGTGGGGATCATTGGTCTAGGTAGAATTGGGACTGCCATCGC 527
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 420 CAAGTTTAGTGGAAAATCCGTGGGCATCATTGGCCTAGGTAGAATTGGGACTGCCATCGC 479
Query 528 AAAGAGGGCTGAAGCCTTTAGCTGCCCAATCAATTACTACTCAAGAACCATTAAGCCTGA 587
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 AAAGAGGGCTCAAGCCTTTAGCTGCCCAATCAATTACTACTCAAGAACCGTTAAGCCTGA 539
Query 588 TGTCGCC-TACAAGTATTATCCGACGGTGGTTGACCTTGCTCAAAACTCAGACATCCTCG 646
||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 TGT-GCCCTACAAGTATTATCCAACGGTGGTTGACCTTGCTCAAAACTCAGACATCCTCG 598
Query 647 TCGTCGCATGCCCGTTGACCGAGCAGACCAGACACATTGTGGACCGGCAGGTCATGGATG 706
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGTGGCATGCCCCTTGACCGACCAGACCAGACACATTGTGGACCGGCAGGTCATGGATG 658
Query 707 CATTAGGAGCTAAGGGCGTCCTCATAAACATTGGCCGTGGACCACATGTTGATGAGCAAG 766
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CATTAGGACCTAAGGGTGTGCTCATAAACATTGGCCGTGGACCACATGTTGATGAGCAAG 718
Query 767 AGCTTATTAAAGCTCTAACAGAAGGCCGCCTAGGTGGGGCTGCCCTTGATGTGTTTGAGC 826
||||| | ||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 719 AGCTTGTCAAAGCTCTAACAGAAGGACGCCTAGGTGGGGCTGCGCTCGATGTGTTTGAGC 778
Query 827 AGGAGCCTCACGTGCCCGAGGAGCTCTTTGGCCTTGAGAATGTAGTTCTCCTCCCTCACG 886
| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 779 ATGAGCCTCACGTGCCCGAGGAGCTATTTGGCCTTGAGAATGTGGTTCTCCTGCCTCACG 838
Query 887 TTGGGAGTGGCACTGTGGAAACACGGAATGCCATGGCCGATCTTGTCGTGGGTAACTTGG 946
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 TTGGGAGTGGCACTGTGGAAACACGGAATGCCATGGCCGATCTTGTGGTGGGTAACTTGG 898
Query 947 AAGCGCACTTTTCTGGGAAATCACTTCTGACTCCGGTCGTCTGAGTCATG-TGACACATT 1005
|||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 899 AAGCACACTTTTCTGGGAAATCACTTCTGACTCCGGTCGTCTGAGTGATGATGACACATT 958
Query 1006 TGGGATTTG 1014
|||||||||
Sbjct 959 TGGGATTTG 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5