BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79880.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477277 jgi|Araly1|477277|fgenesh2_kg.2__2407__AT1G79880.1 1816 0.0
> Ahg477277 jgi|Araly1|477277|fgenesh2_kg.2__2407__AT1G79880.1
Length=1407
Score = 1816 bits (983), Expect = 0.0
Identities = 1263/1390 (91%), Gaps = 51/1390 (4%)
Strand=Plus/Plus
Query 50 CCTCCTTCAACGAAGAAACCGCCAAGAAGTTGCTTACCCAGGTTGAGTTCTACTTCAGTG 109
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 23 CCTCCTTCGACGAAGAAACCGCCAAGAAGTTGCTTACCCAGGTGGAGTTCTACTTCAGTG 82
Query 110 ACAGTAATCTACCCACAGACGGATTTCTCAACAGGGAAGTCACCAAGAGCAAAGATGGCC 169
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 83 ACAGTAATCTACCCACTGACGGATTTCTCAACAGGGAAGTCACCAAGAGCAAAGATGGTC 142
Query 170 TGGTTAGTTTGCCTCTGGTTTGTTCCTTCTCTCGTATGAGGAACCTCCTTGGCCTCGGTA 229
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 143 TCGTTAGTTTGCCTCTGGTTTGTTCCTTCTCTCGTGTGAGGAACCTCCTTGGCCTCGGTA 202
Query 230 ACATCAATAGAGAAGACATCCCTCCGAGGATTGTGGAGGAAGTTGCTAATCTCTTGCGCA 289
||||||||||||||||| |||||||||| || ||||| |||| ||||||||||||||||
Sbjct 203 ACATCAATAGAGAAGACTTCCCTCCGAGTATCGTGGACCAAGTCGCTAATCTCTTGCGCA 262
Query 290 CCTCTGATTTTCTTAAAGTTTCCAATAATGGACAAAGGATCGGTAGAGGAACTAAACTCT 349
||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||
Sbjct 263 CCTCTGATTTTCTTAAAGTTTCCAACAATGGACAAAGGATTGGTAGAGGATCAAAACTCT 322
Query 350 CCAAACCGGAAGAGGTGCTTGAACAAGTCCACAGAAGAACCCTTGCGGCTTCACCTTTTG 409
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CCAAACCGGAAAAGGTGCTTGAACAAGTCCACAGAAGAACCCTTGCGGCTTCACCTTTTG 382
Query 410 AGTACAGCATTAAGATGGAGGATGTCTCATCTTTCTTCTCCCAATATGCCAAGGTGAACA 469
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 383 AGTACAACACTAAGATGGAGGATGTCGCATCTTTCTTCTCCCAATATGCCAAGGTGAACA 442
Query 470 GTGTGAGACTACCTC-CCAACATCGCTGATAAGCGACGCTTTTGTGGCACTGCGTTGGTT 528
||||||| ||||||| ||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 443 GTGTGAGGCTACCTCACCA-CATCGCAGATAAGCGACGCTTTTGTGGCACTGCCTTGGTT 501
Query 529 GAATTCTCCTCTGAACAAGACACTCAAGATATTTTGAGGCAGAGCTTGGTCTATGCAGGC 588
|| ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 502 GAGTTCTCCTCTGAACAAGACACTGAACATATTTTGAGCCAGAGCTTGGTCTATGCAGGC 561
Query 589 GCTGACTTAGTATTAATACCAAAGAGTGATTTTGACTGTCAAAGAGAGAATATGATCAAG 648
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 562 GCTGACTTACTATTAATACCAAAGAGTGATTTTGACTGTCAAAGAGAGAATATGATTAAG 621
Query 649 CAACTCGGAAAATCAGAGTCC---CA------CAACGAATTCCGCAGAGGACAAATTGTC 699
|||||||||||||||| ||| || ||||||||||||||||||||| |||||
Sbjct 622 CAACTCGGAAAATCAGGGTCAATTCATAGAGACAACGAATTCCGCAGAGGACAGCTTGTC 681
Query 700 AAATTTGCATTGAAATGGATAGCCAGTgaagaaaaagtaacaaacaaagaaaaacccagc 759
|||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| ||||
Sbjct 682 AAATTTACATTGAAATGGATTGCCAGTGGGGAAAAGGTAACAAACAAAGAAAAAACCAGG 741
Query 760 gctctgaaaaataaaattaaagagaagga---ag--aTAAG--GAGACA--GGCATTGC- 809
||||||||||| ||||| ||||| ||||| || || | |||| | || | |
Sbjct 742 GCTCTGAAAAAGAAAATCAAAGATAAGGAGGCAGGCATT-GCTGAGAGATTGGAAG-GAA 799
Query 810 -TGATAGAG--A-G-AA-G-G-A-A---A-ATGG-AGATAACTCATGTGCTAGCTTGTGC 855
|||||||| | | || | | | | | | || |||||||||||||||||||||||||
Sbjct 800 ATGATAGAGTCAAGGAAAGTGGAGATTCACA-GGCAGATAACTCATGTGCTAGCTTGTGC 858
Query 856 AAGGACAA---C-AC-----TGATCAACTTGTGGTTCCCCCATGGAACAACAGTAATTCT 906
||||| || | || ||||||||||||||||||||| |||||||||||| |||||
Sbjct 859 AAGGAGAAAATCGACAACGCTGATCAACTTGTGGTTCCCCCTTGGAACAACAGTGATTCT 918
Query 907 GTCAGCTCTGAGGTTCTCAAGGATCTTTTTCAAAGATTTGGCAGCGTTGAACACATAGAA 966
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 919 GTGGGCTCTGAGGTTCTCAAGGATCTTTTTCAAAGATTTGGCAGCGTTAAACACATAGAA 978
Query 967 TACTCTGGTGGATTGGATTCGGGTTACGTTTGGTTCACAGATTCAGAAACAGCAATGAAA 1026
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 979 TACTCTGGTGGATTGGATTCGGGTTACGTTTGGTTCATAGATTCGGAAACAGCAATGAAA 1038
Query 1027 GCCCGTGCAGCTGTGGAGTTTGTTGGAGGTTTAGTTGTGAAGAATAACTTCTCAGTAGCC 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1039 GCCCGTGCAGCTGTGGAGTTTGTTGGAGGTTTAGTTGTGAAGAATAACTTCTTAGTAGCC 1098
Query 1087 TTAGAAGCAATTAATGGGGAGATGGAGAGAGAGTTGTGGAAAAGACTATCATCAGCTGAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTAGAAGCAATTAATGGGGAGATGGAGAGAGAGTTGTGGAAAAGACTATCATCAGCTGAG 1158
Query 1147 CTGGAAGGAGG-G--AAAGAAGGTCACAAAAAGGAAAAAGGCAAAGATGAGTGTTTTGAA 1203
|| |||||||| | |||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1159 CTAGAAGGAGGAGGGAAAGGTGGTCACAAAAAGGAAAAAGGCACAGATGAGTGTTTTGAA 1218
Query 1204 AACGTGCAACCTACCAAGAAGGCCCGAAAGGAGCCCTAATTAAAGTTTTGGGTTTTGTTT 1263
| | ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 1219 ACCATGCAACCGACCAAGAAGGCTCGAAAGGAGCCCTAATTAAAGCTTTGGGTTTTGTGT 1278
Query 1264 TATGTCATCCTCTTCTCTACGtttttttAGGTTCAGCTGATTCTCAACAAAATAGATATT 1323
|||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 1279 TATGTCATACTCTTCTCTAC-TTTTTAGAGGTTCAGCAGATTCTCAACAAAATAGATATT 1337
Query 1324 GCTTCACTTGACTGACATCTATGAGTAGTTTTGTAAACGTTTTTTGGTCTGGGATGGTTA 1383
||||||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||||
Sbjct 1338 GCTTCACTTCACTGACATCTATAAGTGGTTTGGTAAACGTTTCTTGGTCTGGGATGGTTA 1397
Query 1384 ATGACTTGAC 1393
||||||||||
Sbjct 1398 ATGACTTGAC 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5