BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79880.1 Length=1436 Score E Sequences producing significant alignments: (Bits) Value Ahg477277 jgi|Araly1|477277|fgenesh2_kg.2__2407__AT1G79880.1 1816 0.0 > Ahg477277 jgi|Araly1|477277|fgenesh2_kg.2__2407__AT1G79880.1 Length=1407 Score = 1816 bits (983), Expect = 0.0 Identities = 1263/1390 (91%), Gaps = 51/1390 (4%) Strand=Plus/Plus Query 50 CCTCCTTCAACGAAGAAACCGCCAAGAAGTTGCTTACCCAGGTTGAGTTCTACTTCAGTG 109 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 23 CCTCCTTCGACGAAGAAACCGCCAAGAAGTTGCTTACCCAGGTGGAGTTCTACTTCAGTG 82 Query 110 ACAGTAATCTACCCACAGACGGATTTCTCAACAGGGAAGTCACCAAGAGCAAAGATGGCC 169 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 83 ACAGTAATCTACCCACTGACGGATTTCTCAACAGGGAAGTCACCAAGAGCAAAGATGGTC 142 Query 170 TGGTTAGTTTGCCTCTGGTTTGTTCCTTCTCTCGTATGAGGAACCTCCTTGGCCTCGGTA 229 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 143 TCGTTAGTTTGCCTCTGGTTTGTTCCTTCTCTCGTGTGAGGAACCTCCTTGGCCTCGGTA 202 Query 230 ACATCAATAGAGAAGACATCCCTCCGAGGATTGTGGAGGAAGTTGCTAATCTCTTGCGCA 289 ||||||||||||||||| |||||||||| || ||||| |||| |||||||||||||||| Sbjct 203 ACATCAATAGAGAAGACTTCCCTCCGAGTATCGTGGACCAAGTCGCTAATCTCTTGCGCA 262 Query 290 CCTCTGATTTTCTTAAAGTTTCCAATAATGGACAAAGGATCGGTAGAGGAACTAAACTCT 349 ||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||| Sbjct 263 CCTCTGATTTTCTTAAAGTTTCCAACAATGGACAAAGGATTGGTAGAGGATCAAAACTCT 322 Query 350 CCAAACCGGAAGAGGTGCTTGAACAAGTCCACAGAAGAACCCTTGCGGCTTCACCTTTTG 409 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 CCAAACCGGAAAAGGTGCTTGAACAAGTCCACAGAAGAACCCTTGCGGCTTCACCTTTTG 382 Query 410 AGTACAGCATTAAGATGGAGGATGTCTCATCTTTCTTCTCCCAATATGCCAAGGTGAACA 469 |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 383 AGTACAACACTAAGATGGAGGATGTCGCATCTTTCTTCTCCCAATATGCCAAGGTGAACA 442 Query 470 GTGTGAGACTACCTC-CCAACATCGCTGATAAGCGACGCTTTTGTGGCACTGCGTTGGTT 528 ||||||| ||||||| ||| |||||| |||||||||||||||||||||||||| |||||| Sbjct 443 GTGTGAGGCTACCTCACCA-CATCGCAGATAAGCGACGCTTTTGTGGCACTGCCTTGGTT 501 Query 529 GAATTCTCCTCTGAACAAGACACTCAAGATATTTTGAGGCAGAGCTTGGTCTATGCAGGC 588 || ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| Sbjct 502 GAGTTCTCCTCTGAACAAGACACTGAACATATTTTGAGCCAGAGCTTGGTCTATGCAGGC 561 Query 589 GCTGACTTAGTATTAATACCAAAGAGTGATTTTGACTGTCAAAGAGAGAATATGATCAAG 648 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 562 GCTGACTTACTATTAATACCAAAGAGTGATTTTGACTGTCAAAGAGAGAATATGATTAAG 621 Query 649 CAACTCGGAAAATCAGAGTCC---CA------CAACGAATTCCGCAGAGGACAAATTGTC 699 |||||||||||||||| ||| || ||||||||||||||||||||| ||||| Sbjct 622 CAACTCGGAAAATCAGGGTCAATTCATAGAGACAACGAATTCCGCAGAGGACAGCTTGTC 681 Query 700 AAATTTGCATTGAAATGGATAGCCAGTgaagaaaaagtaacaaacaaagaaaaacccagc 759 |||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| |||| Sbjct 682 AAATTTACATTGAAATGGATTGCCAGTGGGGAAAAGGTAACAAACAAAGAAAAAACCAGG 741 Query 760 gctctgaaaaataaaattaaagagaagga---ag--aTAAG--GAGACA--GGCATTGC- 809 ||||||||||| ||||| ||||| ||||| || || | |||| | || | | Sbjct 742 GCTCTGAAAAAGAAAATCAAAGATAAGGAGGCAGGCATT-GCTGAGAGATTGGAAG-GAA 799 Query 810 -TGATAGAG--A-G-AA-G-G-A-A---A-ATGG-AGATAACTCATGTGCTAGCTTGTGC 855 |||||||| | | || | | | | | | || ||||||||||||||||||||||||| Sbjct 800 ATGATAGAGTCAAGGAAAGTGGAGATTCACA-GGCAGATAACTCATGTGCTAGCTTGTGC 858 Query 856 AAGGACAA---C-AC-----TGATCAACTTGTGGTTCCCCCATGGAACAACAGTAATTCT 906 ||||| || | || ||||||||||||||||||||| |||||||||||| ||||| Sbjct 859 AAGGAGAAAATCGACAACGCTGATCAACTTGTGGTTCCCCCTTGGAACAACAGTGATTCT 918 Query 907 GTCAGCTCTGAGGTTCTCAAGGATCTTTTTCAAAGATTTGGCAGCGTTGAACACATAGAA 966 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 919 GTGGGCTCTGAGGTTCTCAAGGATCTTTTTCAAAGATTTGGCAGCGTTAAACACATAGAA 978 Query 967 TACTCTGGTGGATTGGATTCGGGTTACGTTTGGTTCACAGATTCAGAAACAGCAATGAAA 1026 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 979 TACTCTGGTGGATTGGATTCGGGTTACGTTTGGTTCATAGATTCGGAAACAGCAATGAAA 1038 Query 1027 GCCCGTGCAGCTGTGGAGTTTGTTGGAGGTTTAGTTGTGAAGAATAACTTCTCAGTAGCC 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1039 GCCCGTGCAGCTGTGGAGTTTGTTGGAGGTTTAGTTGTGAAGAATAACTTCTTAGTAGCC 1098 Query 1087 TTAGAAGCAATTAATGGGGAGATGGAGAGAGAGTTGTGGAAAAGACTATCATCAGCTGAG 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 TTAGAAGCAATTAATGGGGAGATGGAGAGAGAGTTGTGGAAAAGACTATCATCAGCTGAG 1158 Query 1147 CTGGAAGGAGG-G--AAAGAAGGTCACAAAAAGGAAAAAGGCAAAGATGAGTGTTTTGAA 1203 || |||||||| | |||| |||||||||||||||||||||| |||||||||||||||| Sbjct 1159 CTAGAAGGAGGAGGGAAAGGTGGTCACAAAAAGGAAAAAGGCACAGATGAGTGTTTTGAA 1218 Query 1204 AACGTGCAACCTACCAAGAAGGCCCGAAAGGAGCCCTAATTAAAGTTTTGGGTTTTGTTT 1263 | | ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 1219 ACCATGCAACCGACCAAGAAGGCTCGAAAGGAGCCCTAATTAAAGCTTTGGGTTTTGTGT 1278 Query 1264 TATGTCATCCTCTTCTCTACGtttttttAGGTTCAGCTGATTCTCAACAAAATAGATATT 1323 |||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| Sbjct 1279 TATGTCATACTCTTCTCTAC-TTTTTAGAGGTTCAGCAGATTCTCAACAAAATAGATATT 1337 Query 1324 GCTTCACTTGACTGACATCTATGAGTAGTTTTGTAAACGTTTTTTGGTCTGGGATGGTTA 1383 ||||||||| |||||||||||| ||| |||| |||||||||| ||||||||||||||||| Sbjct 1338 GCTTCACTTCACTGACATCTATAAGTGGTTTGGTAAACGTTTCTTGGTCTGGGATGGTTA 1397 Query 1384 ATGACTTGAC 1393 |||||||||| Sbjct 1398 ATGACTTGAC 1407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53707245450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5