BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79890.1
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477275 jgi|Araly1|477275|fgenesh2_kg.2__2405__AT1G79890.1 3629 0.0
> Ahg477275 jgi|Araly1|477275|fgenesh2_kg.2__2405__AT1G79890.1
Length=2607
Score = 3629 bits (1965), Expect = 0.0
Identities = 2164/2259 (96%), Gaps = 17/2259 (1%)
Strand=Plus/Plus
Query 392 ACGATCAAGAATTTTTGTTGGATGAATACGAAAGCCAAGATGAATCATCTCCGGGCGGAG 451
||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 365 ACGATCAAGAATTTTTGCTGGAAGAATACCAAAGCCAAGATGAATCATCCCCGGGCGGAG 424
Query 452 GCAACTCTAAAAGAAAACCTGCCCGAGGTTTTGACAGTAGTTCATCAGAGGATGAGGAAG 511
|||||||||| |||||||||||||||| ||||||| | |||||| || | || |
Sbjct 425 GCAACTCTAAGAGAAAACCTGCCCGAGCTTTTGAC---ACTTCATC-----ATCA-GAGG 475
Query 512 ATGAGAATGACTGCTCGGATGACGAACAAGGAGGCTTCAAGGTTTTCTTTTGCAGCCGCA 571
||||| |||||||||| |||||||||| | | |||||||||||||||||||||||||||
Sbjct 476 ATGAGGATGACTGCTCCGATGACGAAC-A--ATGCTTCAAGGTTTTCTTTTGCAGCCGCA 532
Query 572 CACATTCACAGCTTTCCCAGTTTGTCAAGGAGTTGAGAAAGACTGTCTTTGCCAAAAAAC 631
||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||
Sbjct 533 CACATTCACAGCTTTCCCAGTTTGTCAAGGAGTTGAGGAAGACTGTGTTTTCCTCAAAAC 592
Query 632 TCAAAGTTGTGTGTCTCGGCTCCCGAAAGAACTTGTGCATAAACGAAGATGTTCTTAAGC 691
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 593 TCAATGTTGTCTGTCTCGGCTCCCGAAAGAACTTGTGCATTAACGAAGATGTTCTTAAGC 652
Query 692 TTGGGAATGTGACCCGAATCAACGAGAGGTGCTTGGACTTGCAAAAGAAGAAGATATCTC 751
||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 653 TTGCGAATGTGACCCGAATCAACGAGAGCTGCTTGGACTTGCAAAAGAAGAAGAAATCTC 712
Query 752 AAGTCTCTAAAAAGAAGAATTTAGGTGCAAATGTAAGAATAGTACGAACCAAAGCTTCTT 811
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 713 AAGTCTCTAAAAAGAAGAATTTAGGTGCAAATGTAAGAATAGGACGAACCAAAGCTTCTT 772
Query 812 GCAGATGCCCAATGCTTAGAAAACATAAACTACAGAGAGAATTCAAGGCTGAGAGTTTTC 871
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GCGGATGCCCACTGCTTAGAAAACATAAACTACAGAGAGAATTCAAGGCTGAGAGTTTTC 832
Query 872 AACAAGAAGCCATGGACATTGAGGATCTTGTTCAGCTTGGACGAGAGATGAGAACTTGTC 931
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 833 AACAAGAAGCCATGGACATTGAGGATCTTGTTCAGCTTGGACGACAAATGAGAACTTGTC 892
Query 932 CATACTACGGTTCTAGAAGAATGGCCCCGGCAGCTGATCTTGTTATTCTTCCATATCAAT 991
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 893 CATACTACGGTTCTAGAAGAATGGCCCCCGCAGCTGATCTTGTTATTCTTCCATATCAGT 952
Query 992 CTCTTCTATCAAAGTCGTCACGAGAATCTCTTGGCCTAAGCTTGAAAAATAGTGTTGTTA 1051
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 953 CTCTTCTATCAAAGTCCTCACGAGAATCTCTTGGCCTAAGCTTGAAAAACAGTGTTGTTA 1012
Query 1052 TCATAGACGAGGCTCACAATTTGGCTGACACTCTTCTCAGTATGCACGATGCAAAACTAA 1111
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1013 TCATAGACGAGGCTCACAATTTGGCTGACATTCTTCTCAGTATGCACGATGCAAAAATAA 1072
Query 1112 CAGTGTCACAGTTGGAGGATATACATTGCAGCATAGAGAGTTATCTGGGAAGATTCCAGA 1171
|| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1073 CACTGTCACAGTTGGAGGATATACAGTGCAGTATAGAGAGTTATCTGGGAAGATTCCAGA 1132
Query 1172 ATCTCTTGGGAGCTGGAAACAGGAGATATATCCAAATTATGTTGATTCTTACCCGAGCTT 1231
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATCTCTTGGGAGCTGGAAACCGGAGATATATCCAAATTATGTTGATTCTTACCCGAGCTC 1192
Query 1232 TCCTCAAACCTCTTGCTAGTGATAGGAATCTGAGTAGCGTAAATGTTGGTCTTGATACTG 1291
||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1193 TCCTCAAACCTCTTGCTAGTGATTGGAATCTGAACAGCGTAAATGTTGGGCTTGATACTG 1252
Query 1292 AAAACCCCTCTAAAAGCAAGCCTTGTGGTGCTTGTTCAATGGCAATATATGACTTTTTGT 1351
||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1253 GAAACCCCTCGAAAAGCAAACCTTGTGGTGCTTGTTCGATGGCAATAAATGACTTTTTAT 1312
Query 1352 TTTCTCTCAATATAGACAATATAAATTTGGTCAAGTTACTCGCCTATATAAAGGAAAGCA 1411
||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1313 TTTCTCTGAATATAGACAACATCAATTTGGTCAAATTACTCGCCTATATAAAGGAAAGCA 1372
Query 1412 ATATCATTCATAAGGTCAGTGGATATGGAGAGAGAGTCGCTGCTATGTTGCAGAAAGATC 1471
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1373 ATATCATTCATAAGGTCAGTGGATATGGAGAGAGAGT---TGCTATGTTGCAGAAAGATC 1429
Query 1472 CAGTGGCTCATGAAGAAATGAGCAAGTTAACAAGTTTTAGAGCGTTTTCTGATATGTTGG 1531
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CAGTGGCTCATGAGGAAATGAGCAAGTTAACAAGTTTTAGAGCGTTTTCTGATATGTTGG 1489
Query 1532 TGGCGCTCACTAATAACAATGGTGATGGGCGGATAATAATCTCAAGGACGAGTTCGTCTA 1591
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TGGCGCTTACTAATAACAATGGTGATGGGCGGATAATAATCTCAAGGACGAGTTCGTCTG 1549
Query 1592 CCTCTGGCCAACATGGAGGGTACATTAAATATGTCATGCTCACTGGAGCGAAGTTATTTT 1651
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1550 CCTCTGGCCAACAAGGAGGGTACATCAAATATGTCATGCTCACTGGAGCGAAATTATTTT 1609
Query 1652 CAGAGGTGGTGGATGAAGCGCATGCTGTCATATTGGCCGGTGGGACTCTTCAACCTATAG 1711
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CGGAGGTGGTGGATGAAGCGCATGCTGTCATATTGGCCGGTGGGACTCTTCAACCTATAG 1669
Query 1712 AAGAGACAAGGGAACGACTCTTTCCATGGCTACCATCAAATCAGCTGCAGTTCTTCTCAT 1771
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1670 AAGAGACAAGGGAACGACTCTTTCCATGGCTACCATCAGATCAGCTGCAGTTCTTCTCAT 1729
Query 1772 GTAGTCACATTGTTCCTCCTGAGAGCATAATGCCAATTGCAGTTTCACATGGTCCTTCTG 1831
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GTAGTCACATTGTTCCTTCTGAGAGCATAATGCCAATTGCAGTTTCACATGGTCCTTCTG 1789
Query 1832 GTCAGTCTTTTGACTTTAGCCACAGTTCAAGAAGCTCAATAGGAATGATACAGGAGTTAG 1891
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1790 GTCAGTCTTTTGACTTTAGCCACAGTTCAAGAGGCTCAACAGGAATGATACAGGAGTTAG 1849
Query 1892 GACTCTTAATGAGCAACCTTGTGGCAGTGGTTCCTGAAGGAATTATCGTCTTCTTCTCCT 1951
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1850 GACTCTTAATGAGCAACCTGGTGGCAGTGGTTCCTGAAGGAGTTATCGTCTTCTTCTCCT 1909
Query 1952 CCTTTGAGTATGAAACACAGGTGCACACAGCGTGGAGTAACTCAGGGATACTCAGAAGAA 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 CCTTTGAGTATGAAACACAGGTGCACACAGCGTGGAGTAACTCAGGGATACTCAGAAGAA 1969
Query 2012 TAGTGAAGAAGAAGCGTGTGTTCAGAGAACCCAGGAA-AAACACTGAAGTAGAAGCTGTT 2070
|| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1970 TAATGAAGAAGAAGCGTGTGTTCAGAGAACCCA-GAAGAAACACTGAAGTAGAAGCTGTC 2028
Query 2071 CTCAGAGATTACAAGGAAGCGATAGAAAGCGAAAGAGGGGCAATAATGCTAGCTGTGGTT 2130
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2029 CTCAGAGATTACAAGGAAGCAATAGAAAGCGAAAGAGGGGCAATAATGCTAGCTGTGGTT 2088
Query 2131 GGTGGGAAGGTGTCAGAAGGAATCAACTTCAGCGACAGCATGTGTCGGTGTGTTGTGATG 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 GGTGGGAAGGTGTCAGAAGGAATCAACTTCAGCGACAGCATGTGTCGGTGTGTTGTGATG 2148
Query 2191 GTTGGTTTGCCGTATCCCAGCCCGTCTGACATAGAGTTGTTAGAGAGAATAAAGCATATA 2250
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2149 GTTGGTCTGCCGTATCCCAGCCCGTCTGACATTGAGTTGTTAGAGAGAATAAAGCATATA 2208
Query 2251 GAAGGTCGTGCAGATTCAGATTCCATAAAACCTTCTGTGACTTTGGTTGATGATTCTTAC 2310
||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2209 GAAGGTCTTGGAGATTCAGATTCCGTAAAACCTTCTGTGACTTTGGTTGATGATTCTTAC 2268
Query 2311 TACAGTGGAGATGTTCAAGCAGGATTTGGCGTGTTAAAGAGCTGCAAACGGAGAGGGAAA 2370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2269 TACAGTGGAGATGTTCAAGCAGGATTTGGCGTGTTAAAGAGCTGCAAACGGAGAGGAAAA 2328
Query 2371 GAATACTATGAAAATCTGTGTATGAAAGCAGTTAACCAATCAATCGGTAGGGCAATCAGA 2430
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2329 GAATACTATGAAAATCTGTGTATGAAAGCGGTTAACCAATCAATCGGTAGGGCAATCAGA 2388
Query 2431 CACGAAAAGGACTATGCATCCATTTTACTGGTAGATGCTCGATATTCTAATGATCCATCC 2490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 CACGAAAAGGACTATGCATCCATTTTACTGGTAGATGCTCGATATTCTAATGATCCATCC 2448
Query 2491 AAAAGAACATCTCATTCTCATCCATCCAACAAGCTCCCAAAGTGGATCAAAGATCGTCTT 2550
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2449 AAAAGAACATCTCATTCTCATCCATCCAACAAGCTCCCAAAGTGGATCAAAGATTGTCTT 2508
Query 2551 ATTTATTCCACCAAAGGCTATGGAGATGTTCACAGACTGTTGCACCAATTCTTTAAACAT 2610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 ATTTATTCCACCAAAGGCTATGGAGATGTTCACAGACTGTTGCACCAATTCTTTAAACAT 2568
Query 2611 AAAAATGTTGAAAATTCATCCGAAACCAATCAGCATTAG 2649
||||||||||||||||||||||||||||||||||| |||
Sbjct 2569 AAAAATGTTGAAAATTCATCCGAAACCAATCAGCACTAG 2607
Score = 414 bits (224), Expect = 1e-114
Identities = 280/306 (92%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 1 ATGACGGAGATACGAGAGTTCCCGGCGTTTCCATACAAGCCGTACTCGATCCAGATCGAT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACGGAGAAACGAGAGTTCCCGGCGTTTCCATACAAGCCGTACTCGATCCAAATCGAT 60
Query 61 TTCATGAATGCGCTCTATCAATTTCTCGATAAGGGAGGCGTCTCCATGCTCGAAAGCCCC 120
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 61 TTCATGAATGCGCTCTATCAGTTTCTCGACAAAGGAGGCGTCTCCATGCTCGAAAGCCCT 120
Query 121 ACTGGGACTGGAAAATCTCTAAGCATTATCTGCAGTGCTCTCCAGTGGCTTACTGACCGC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 121 ACCGGGACTGGAAAATCTCTAAGCATTATCTGCAGTGCTCTCCAGTGGCTGATTGACCGC 180
Query 181 AAGGAGAAACGAAACTCAGGATTGACCGAAGAATCCCATAAGGTTGATGGAAACGATGAT 240
||||||||||||||||||| || | | |||||||| ||||||||||| |||||||||
Sbjct 181 AAGGAGAAACGAAACTCAGAAT---C--A-GAATCCCACAAGGTTGATGGCAACGATGAT 234
Query 241 GAGGACGAGCCCGATTGGATGAGGAA-TTTTACTCTCAACGAAGCAGATGGAGCCAATGG 299
||||||||||||||||||||| | || |||||||| |||||||| |||| |||||| ||
Sbjct 235 GAGGACGAGCCCGATTGGATGCG-AACTTTTACTCCCAACGAAGAAGATAGAGCCAGTGA 293
Query 300 TGACAA 305
||||||
Sbjct 294 TGACAA 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99910712635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5