BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79900.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927522 jgi|Araly1|927522|scaffold_203083.1 1493 0.0
> Ahg927522 jgi|Araly1|927522|scaffold_203083.1
Length=932
Score = 1493 bits (808), Expect = 0.0
Identities = 892/933 (96%), Gaps = 4/933 (0%)
Strand=Plus/Plus
Query 319 GTACAATCCCATCCTT-GG-TATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGA 376
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTACAATCCCATCCTTGGGATATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGA 60
Query 377 AGAGAGTTCGTCGCCGGTGGTTTCGGTGGCGTCGCCGGCATCATCTCCGGCTACCCCTTG 436
||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 61 CGAGAGTTCGTCGCCGGTGGTTTCGGAGGTGTTGCCGGAATCATCTCCGGCTACCCCTTG 120
Query 437 GACACCCTCAGAATTCGCCAGCAACAGAGCTCGAAATCTGGATCTGCCTTCTCCATTCTC 496
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 GACACCCTCAGAATTCGCCAGCAACAGAGCTCTAAATCGGGATCTGCCTTCTCCATTCTC 180
Query 497 CGGCGGATGCTCGCCATTGAGGGTCCCTCCTCTCTCTACAGAGGCATGGCTGCGCCTTTG 556
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CGGCGGATGCTCGCCGTTGAGGGTCCCACCTCTCTCTACAGAGGCATGGCTGCGCCTTTG 240
Query 557 GCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATATACGCCATATTCTCTCGCTCT 616
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATTTACGCCATATTCTCTCGCTCC 300
Query 617 TTTGATTCCTCTGTTCCTCTGGTAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGTGGT 676
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 301 TTTGATTCCTCTGTTCCTCTGGAAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGAGGT 360
Query 677 GTTGCCACCGGTGCTGTACAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGT 736
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGCCACCGGTGCTGTCCAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGT 420
Query 737 CTCCAGCTTCAGCAGACTAAGTCTGGTCCCATCACCTTGGCCAAGAGCATCCTTAGGAGA 796
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 421 CTCCAGCTTCAGCAGACCAAGTCTGGTCCCCTCACCTTGGCCAAGAGTATCCTTAGGAGT 480
Query 797 CAGGGCCTTC-AGGGGCTTTACAGAGGCCTCACCATCACCGTGCTCCGAGATGCTCCCGC 855
||||||| || |||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 481 CAGGGCC-TCAAGGGGCTTTACAAAGGCCTCACCATCACTGTGCTCCGAGATGCTCCCGC 539
Query 856 TCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCAG 915
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 TCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCCG 599
Query 916 AAAGACCGGACAAGAAAACCTCAGGACCATGCTCGTGGCTGGTGGCCTTGCTGGAGTGGC 975
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 600 AAAGACCGGACAAGAAAACCTCAGGACCATGCTGGTCGCTGGTGGCCTTGCTGGAGTGGC 659
Query 976 CAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTCCAACAAGGTCATGG 1035
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 660 CAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTGCAGCAAGGTCATGG 719
Query 1036 GGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACGGT 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACCGT 779
Query 1096 TCTCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTT 1155
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTCTGGCGTGGCCTTGGCACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTT 839
Query 1156 TGCTGCTTATGAGGTAGCCTTGCGGTGTCTATTCAATCAATCGCCATCCCCAGATATTGT 1215
||||||||||||||| |||||||||||| | |||| ||||| ||||||||| ||| ||||
Sbjct 840 TGCTGCTTATGAGGTCGCCTTGCGGTGTTTTTTCACTCAATTGCCATCCCCTGATGTTGT 899
Query 1216 CACAGGAGATTGAGTGAGTAAAGGGCAAAGAAG 1248
|| |||||| |||||||||||||||||||||||
Sbjct 900 CAAAGGAGAGTGAGTGAGTAAAGGGCAAAGAAG 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5