BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G79910.1 Length=1471 Score E Sequences producing significant alignments: (Bits) Value Ahg477272 jgi|Araly1|477272|fgenesh2_kg.2__2402__AT1G79910.2 1622 0.0 > Ahg477272 jgi|Araly1|477272|fgenesh2_kg.2__2402__AT1G79910.2 Length=1178 Score = 1622 bits (878), Expect = 0.0 Identities = 1088/1181 (92%), Gaps = 48/1181 (4%) Strand=Plus/Plus Query 148 ttttttttCGAAAGGCAAAATGTTTGATGGGCTGTTCAAACCCAAGTTTTATACGAAATG 207 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 TTTTTTTTGGAAAGGCAAAATGTTTGATGGGCTGTTCAAACCCAAGTTCTATACGAAATG 60 Query 208 CAAGTCGTTGGTCAAGATAACGAAGACAAGAGTAGACACGGTGAAGAGGAAGAAAAACTC 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAAGTCGTTGGTCAAGATAACGAAGACAAGAGTAGACACGGTGAAGAGGAAGAAAAACTC 120 Query 268 GGTTTGCAAATATCTCAAGAACGACATTGTCGATCTTCTCAAGAACAGCCTCGATTACAA 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTTTGCAAATATCTCAAGAACGACATTGTCGATCTTCTCAAGAACAGCCTCGATTACAA 180 Query 328 TGCATATGGCAGGGCAGAAGGGCTTATAGAGGAGAAAAGGAGGCTGGCTTGTTATGAGTT 387 ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGCATATGGCAGG--A-A-GGGCTTATAGAGGAGAAAAGGAGGCTGGCTTGTTATGAGTT 236 Query 388 TTTGGAGCAATTCTGCAACTGTGTTGCATCCAATGTCTCTCTATTACAGAAATCCATCCG 447 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | | Sbjct 237 TTTGGAGCAATTCTGCATCTGTGTTGCATCCAATGTCTCTCTCTTACAGAAATCCAGCGG 296 Query 448 GTGCCCTGATGAGTGCCGCGAGGCCATCTCCTCCCTTGTATATGCAGCCGCTAGAGTCTC 507 |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 297 GTGCCCCGATGAGTGTCGCGAGGCCATCTCCTCCCTTGTATATGCAGCGGCTAGAGTCTC 356 Query 508 TGAAGTCCCTGAGCTACGCGACCTCAGATCTTTATTTGCTGAGAGATACGGAAACACACT 567 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 357 TGAAGTGCCTGAGCTACGCGACCTCAGATCTTTATTTGCTGAGAGATACGGGAACAAACT 416 Query 568 TGATCAGTTTGTGAACCCTGAGTTTGTAGAGAGATTCAAAGCAGAGCCGCCGTCAAAGGA 627 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TGAACAGTTTGTGAATCCTGAGTTTGTAGAGAGATTCAAAGCAGAGCCGCCGTCAAAGGA 476 Query 628 AATGAAAGTGGAGCTGCTGCAGGAAATCGCCAGAGAGTACTCCATAAAATGGGATGCCAA 687 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 477 AATGAAGGTGGAGCTGCTGCAGGAAATCGCAAGAGAGTACTCCATAAAATGGGATGCCAA 536 Query 688 GTCTTTAGAGCAGAGATTGTACACACCACCTCATCATCATCATGTCCATACGGAAACTGA 747 |||||||||||||||||||||||||||| ||||||||||| | | ||||||||| Sbjct 537 GTCTTTAGAGCAGAGATTGTACACACCAGCTCATCATCAT-A---C-----GGAAACTGA 587 Query 748 AGAACCAAAAACAGAGAAGACCAACAGCGAACCCGAAAAGACCATGGAAAAGAGAAGCAG 807 ||| ||||||||||||||| |||| | || ||||||| | | | || | |||| Sbjct 588 AGAGCCAAAAACAGAGAAGTCCAA--G-GACCCCGAAA---C---G-A---GA-A-GCAG 632 Query 808 CCTTTCGTTCCATGGCAGAGAAGACTCGATGGATGACAGCAACAAGTCCATAATGAGTAC 867 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 633 CCTTTGGTTCCATGGCAGAGAAGACTCAATGGATGACAGCAACAAGTCCATAATGAGTAC 692 Query 868 AAGCGAAGAAGACTCCATGAGTACAAGCGGGAGTTGTATGACTGGCCCGGAGGATGATCC 927 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 693 AAGCGAAGAAGACTCCATGAGTACAAGCGGGAGTTGTGTGACTGGCCCGGAGGAGGATCC 752 Query 928 TGAAATGAAACCTTTCTACTACAGATTCATGACTCCTGC-GC-CT-TACACCAAACCCAA 984 ||||| |||||| || ||||||||||||||||||||||| || | |||||||||||||| Sbjct 753 TGAAACGAAACCCTTGTACTACAGATTCATGACTCCTGCTGCGCCATACACCAAACCCAA 812 Query 985 GATCGAAAAACAGGAAAGTCTTCCGGAGAAGATGACTACATCTCATCTCATGGACACCGA 1044 ||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||| Sbjct 813 AATCGAAAAACAGGAAAGCCTTCCGGAGAAGATGACCAAATCTGATCTCATGGACACCGA 872 Query 1045 ATCGCCGACGGGC-GGAAAACCAAAGCCGAGATCAGTGAGACGAAGATTCGCAAACCCG- 1102 |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 873 ATCGCCGA-GGGCCGGAAAAGCAAAGCCGAGATCAGTGAGACGAAGATTCGCAAACCCGA 931 Query 1103 CCACCTGAAGCGGAAACGGAAGGGGAAGCATTGAAATTGAA-AGTAGAGA-GTAAGAACA 1160 || |||||||||||| || || ||||||||||| | | |||| ||| | ||||||| Sbjct 932 CC-CCTGAAGCGGAA--GG--GG--AAGCATTGAAACAGGAGAGTA-AGAAG-AAGAACA 982 Query 1161 TGATGAGAGCATCAGAGTCGATGGGGAAAGCAAGCGGAG-AG-GGT-TTTAGGAGAATGA 1217 | |||||| ||||||| |||||||||||||||||||||| || || ||||||||||||| Sbjct 983 TAATGAGAACATCAGATTCGATGGGGAAAGCAAGCGGAGGAGAGGGGTTTAGGAGAATGA 1042 Query 1218 GTCGTCGAACAGCCTCGTGGCAGCATAAGCCCTCCTCCTGCGTCCCCGATTTTGATGAGG 1277 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1043 GTCGTCGAACAGCCTCGTGGCAGCATAAGCCCTCCAGCTGCGTCCCCGATTTTGATGAGG 1102 Query 1278 TCGCCGCTCGCGTCGATGCCCTCTCCCGATATTGATTTTCT 1318 ||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1103 TCGCCGCTCGCGTCGATGCCCTCTCACGAAATTGATTTTCT 1143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55040404025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5