BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79910.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477272 jgi|Araly1|477272|fgenesh2_kg.2__2402__AT1G79910.2 1622 0.0
> Ahg477272 jgi|Araly1|477272|fgenesh2_kg.2__2402__AT1G79910.2
Length=1178
Score = 1622 bits (878), Expect = 0.0
Identities = 1088/1181 (92%), Gaps = 48/1181 (4%)
Strand=Plus/Plus
Query 148 ttttttttCGAAAGGCAAAATGTTTGATGGGCTGTTCAAACCCAAGTTTTATACGAAATG 207
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTTTTTTGGAAAGGCAAAATGTTTGATGGGCTGTTCAAACCCAAGTTCTATACGAAATG 60
Query 208 CAAGTCGTTGGTCAAGATAACGAAGACAAGAGTAGACACGGTGAAGAGGAAGAAAAACTC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGTCGTTGGTCAAGATAACGAAGACAAGAGTAGACACGGTGAAGAGGAAGAAAAACTC 120
Query 268 GGTTTGCAAATATCTCAAGAACGACATTGTCGATCTTCTCAAGAACAGCCTCGATTACAA 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTTTGCAAATATCTCAAGAACGACATTGTCGATCTTCTCAAGAACAGCCTCGATTACAA 180
Query 328 TGCATATGGCAGGGCAGAAGGGCTTATAGAGGAGAAAAGGAGGCTGGCTTGTTATGAGTT 387
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCATATGGCAGG--A-A-GGGCTTATAGAGGAGAAAAGGAGGCTGGCTTGTTATGAGTT 236
Query 388 TTTGGAGCAATTCTGCAACTGTGTTGCATCCAATGTCTCTCTATTACAGAAATCCATCCG 447
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | |
Sbjct 237 TTTGGAGCAATTCTGCATCTGTGTTGCATCCAATGTCTCTCTCTTACAGAAATCCAGCGG 296
Query 448 GTGCCCTGATGAGTGCCGCGAGGCCATCTCCTCCCTTGTATATGCAGCCGCTAGAGTCTC 507
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 GTGCCCCGATGAGTGTCGCGAGGCCATCTCCTCCCTTGTATATGCAGCGGCTAGAGTCTC 356
Query 508 TGAAGTCCCTGAGCTACGCGACCTCAGATCTTTATTTGCTGAGAGATACGGAAACACACT 567
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 357 TGAAGTGCCTGAGCTACGCGACCTCAGATCTTTATTTGCTGAGAGATACGGGAACAAACT 416
Query 568 TGATCAGTTTGTGAACCCTGAGTTTGTAGAGAGATTCAAAGCAGAGCCGCCGTCAAAGGA 627
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGAACAGTTTGTGAATCCTGAGTTTGTAGAGAGATTCAAAGCAGAGCCGCCGTCAAAGGA 476
Query 628 AATGAAAGTGGAGCTGCTGCAGGAAATCGCCAGAGAGTACTCCATAAAATGGGATGCCAA 687
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 AATGAAGGTGGAGCTGCTGCAGGAAATCGCAAGAGAGTACTCCATAAAATGGGATGCCAA 536
Query 688 GTCTTTAGAGCAGAGATTGTACACACCACCTCATCATCATCATGTCCATACGGAAACTGA 747
|||||||||||||||||||||||||||| ||||||||||| | | |||||||||
Sbjct 537 GTCTTTAGAGCAGAGATTGTACACACCAGCTCATCATCAT-A---C-----GGAAACTGA 587
Query 748 AGAACCAAAAACAGAGAAGACCAACAGCGAACCCGAAAAGACCATGGAAAAGAGAAGCAG 807
||| ||||||||||||||| |||| | || ||||||| | | | || | ||||
Sbjct 588 AGAGCCAAAAACAGAGAAGTCCAA--G-GACCCCGAAA---C---G-A---GA-A-GCAG 632
Query 808 CCTTTCGTTCCATGGCAGAGAAGACTCGATGGATGACAGCAACAAGTCCATAATGAGTAC 867
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 633 CCTTTGGTTCCATGGCAGAGAAGACTCAATGGATGACAGCAACAAGTCCATAATGAGTAC 692
Query 868 AAGCGAAGAAGACTCCATGAGTACAAGCGGGAGTTGTATGACTGGCCCGGAGGATGATCC 927
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 693 AAGCGAAGAAGACTCCATGAGTACAAGCGGGAGTTGTGTGACTGGCCCGGAGGAGGATCC 752
Query 928 TGAAATGAAACCTTTCTACTACAGATTCATGACTCCTGC-GC-CT-TACACCAAACCCAA 984
||||| |||||| || ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 753 TGAAACGAAACCCTTGTACTACAGATTCATGACTCCTGCTGCGCCATACACCAAACCCAA 812
Query 985 GATCGAAAAACAGGAAAGTCTTCCGGAGAAGATGACTACATCTCATCTCATGGACACCGA 1044
||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||
Sbjct 813 AATCGAAAAACAGGAAAGCCTTCCGGAGAAGATGACCAAATCTGATCTCATGGACACCGA 872
Query 1045 ATCGCCGACGGGC-GGAAAACCAAAGCCGAGATCAGTGAGACGAAGATTCGCAAACCCG- 1102
|||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 873 ATCGCCGA-GGGCCGGAAAAGCAAAGCCGAGATCAGTGAGACGAAGATTCGCAAACCCGA 931
Query 1103 CCACCTGAAGCGGAAACGGAAGGGGAAGCATTGAAATTGAA-AGTAGAGA-GTAAGAACA 1160
|| |||||||||||| || || ||||||||||| | | |||| ||| | |||||||
Sbjct 932 CC-CCTGAAGCGGAA--GG--GG--AAGCATTGAAACAGGAGAGTA-AGAAG-AAGAACA 982
Query 1161 TGATGAGAGCATCAGAGTCGATGGGGAAAGCAAGCGGAG-AG-GGT-TTTAGGAGAATGA 1217
| |||||| ||||||| |||||||||||||||||||||| || || |||||||||||||
Sbjct 983 TAATGAGAACATCAGATTCGATGGGGAAAGCAAGCGGAGGAGAGGGGTTTAGGAGAATGA 1042
Query 1218 GTCGTCGAACAGCCTCGTGGCAGCATAAGCCCTCCTCCTGCGTCCCCGATTTTGATGAGG 1277
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1043 GTCGTCGAACAGCCTCGTGGCAGCATAAGCCCTCCAGCTGCGTCCCCGATTTTGATGAGG 1102
Query 1278 TCGCCGCTCGCGTCGATGCCCTCTCCCGATATTGATTTTCT 1318
||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1103 TCGCCGCTCGCGTCGATGCCCTCTCACGAAATTGATTTTCT 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5