BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G79915.1

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927520 jgi|Araly1|927520|scaffold_203081.1                        398    5e-110


> Ahg927520 jgi|Araly1|927520|scaffold_203081.1
Length=533

 Score =  398 bits (215),  Expect = 5e-110
 Identities = 372/443 (84%), Gaps = 30/443 (7%)
 Strand=Plus/Plus

Query  480  GCTCAACTGGATGAGCGATTGGCCTATTCAAGACACCCATGCTCTGTCTCCTTTGTTTAT  539
            ||||||||||||||||||||||||||||||||||| || ||   || || |   | |   
Sbjct  96   GCTCAACTGGATGAGCGATTGGCCTATTCAAGACAGCCGTG--GTGACTGCAGAGATCCC  153

Query  540  GTCAAGCTACTGTTGGAACAAGCAGGACTTTGAACTAGTCAAATGTTCAAGCTTCATTTT  599
            |  || || |||||||| ||||||||||||||||| |||||||| | |||||||||| ||
Sbjct  154  G-AAAACTTCTGTTGGAGCAAGCAGGACTTTGAACAAGTCAAATCTGCAAGCTTCATATT  212

Query  600  CGC-G--GCAGATGTGATCTACAGCGATGATCTAACAATTGCGTTATTTAGCATGCTAAG  656
            ||| |  ||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||||
Sbjct  213  CGCAGCAGCACATGTGATCTACAGCGATGATCTAACCATTGCCTTATTTCGCATGTTAAG  272

Query  657  GAGAGTAATGTCATTCGGTTGTGACAAGGTGCTATATTTGGGATTGGAGAAACGATACAA  716
            |||||| ||| ||||||||||||   |    | | |    ||||||||||||||||||||
Sbjct  273  GAGAGTTATGACATTCGGTTGTG---A----C-A-A----GGATTGGAGAAACGATACAA  319

Query  717  CTTCAGCCTTGATGATCTCAACGTTGTTGCCAATGGCTACACCTGCTTTAGAAGCTACGT  776
            ||||||||||||||      |  |||||||||||||||||||||||||||||||||||||
Sbjct  320  CTTCAGCCTTGATG------A--TTGTTGCCAATGGCTACACCTGCTTTAGAAGCTACGT  371

Query  777  CAAAGAAGATGGAATAGGTAAGCAAGA-GA-AG-AGGAGTTTTGTGGGGAAGCGCATCGA  833
            ||||||||||| || |||| ||||||| || |  |||||||||||||| |||||||||||
Sbjct  372  CAAAGAAGATGCAACAGGTGAGCAAGAAGAGAACAGGAGTTTTGTGGGCAAGCGCATCGA  431

Query  834  CGTCACACAAATCCCCCACTACTTGAAGGATTACGACAGAGGAGAAGATGTTGAGCTATG  893
            ||| ||||| |||||||| |||||||||| ||| || |||||||| ||||||||||| ||
Sbjct  432  CGTTACACAGATCCCCCAGTACTTGAAGGGTTATGATAGAGGAGACGATGTTGAGCTTTG  491

Query  894  GGAGATCAAATATGTACTTCGAT  916
            ||||||||||||||||||| |||
Sbjct  492  GGAGATCAAATATGTACTTTGAT  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34844346138


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5