BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79940.1
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477265 jgi|Araly1|477265|fgenesh2_kg.2__2395__AT1G79940.1 3496 0.0
Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1 1399 0.0
> Ahg477265 jgi|Araly1|477265|fgenesh2_kg.2__2395__AT1G79940.1
Length=2209
Score = 3496 bits (1893), Expect = 0.0
Identities = 2118/2222 (95%), Gaps = 33/2222 (1%)
Strand=Plus/Plus
Query 41 AAGaaaaaaaaaCTGCAACGCCGTTTGTTGCCGATCTGCAGCAGCGCGATCTCTCTGATT 100
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAGGAAAAAAAACTGCAACGCCGTTTGTTGCCGATCTGCAGCAGCGCGATCTCTCTGTTT 60
Query 101 ATAGAGAGC-TAT-CATCCTAGCAGAATAGAATCTCTCAGTTTAAAGGCTCCAAAGATGG 158
| | | | | | | || ||||||| |||||||||| | || ||||||||
Sbjct 61 CTCTCCA-CTTTTCCTTTCT-GCAGAATCGAATCTCTCA---T-----CT-AAAAGATGG 109
Query 159 CGGCGTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGATTATGGCAATTC 218
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 CGGCTTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGATTATGGCAATTC 169
Query 219 CTTTGGTGCCTTACACCATGGTCAAGTTAAGCGGTGCTCTCTCCAAGAAACAAAGGACCA 278
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 170 CTTTGGTGCCTTATACCATGGTCAAGTTAACCGGTGCTCTCTCCAAGAAACAAAGGACCA 229
Query 279 TTCATTGTCAGTGTCTCGAGTGTGACCGTTCTGGAAAATATAAGAGATCCTTGTTTAAAA 338
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 230 TTCACTGTCAGTGTCTCGAGTGTGACCGTTCTGGCAAATATAAGAGATCCTTGTTTAAAA 289
Query 339 AGATCTCTAACTTCTCTACGTGGAGCAACTTGACACTTGTGCTACTCTGGGTCGTGATGA 398
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 290 AGATCTCTAACTTCTCTACATGGAGCAACTTGACGCTTGTGCTACTCTGGGTCGTGATGG 349
Query 399 TTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAGGCTCAAGTTTTTGACCCATTCA 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAGGCTCAAGTTTTTGACCCATTCA 409
Query 459 GTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAGCATATAGAAGGC 518
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 410 GTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATTAAGAAAGCATATAGAAGGC 469
Query 519 TGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGAAGCCAATAAATATTTTGTGG 578
|||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 470 TGTCCATTCAATACCATCCTGATAAAAATCCAGATCCAGAGGCCAATCAATATTTCGTGG 529
Query 579 AGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGA 638
||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 530 AGTTCATTTCTAAAGCCTACCAGGCTTTGACTGATCCTGTATCCCGTGAAAACTTTGAGA 589
Query 639 AGTATGGTCATCCAGATGGCAGACAGGGATTTCAAATGGGCATTGCTCTTCCTCAATTTC 698
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 590 AGTATGGTCATCCAGATGGCAGACAGGGATTCCAAATGGGCATTGCTCTTCCTCAATTTC 649
Query 699 TTCTAGACATTGATGGAGCATCTGGTGGCATATTATTGCTTTGGATAGTTGGTGTCTGTA 758
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TTTTAGACATTGATGGAGCATCTGGTGGCATATTATTGCTTTGGATAGTTGGTGTCTGTA 709
Query 759 TTCTCTTGCCCCTTGTGATTGCTGTTATATATCTCTCGAGGTCATCAAAGTATACTGGGA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 710 TTCTCTTGCCCCTTGTGATTGCTGTTATATATCTCTCGAGGTCATCAAAGTATACCGGCA 769
Query 819 ACTACGTTATGCATCAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 770 ACTACGTTATGCATCAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTTTGGCCC 829
Query 879 CAAGCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGTTCGTA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CAAGCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGTTCGTA 889
Query 939 GAACTGATGATGAACCTCTGCAGAAGCTCTTTATGTCTGTTAGGAGTGAACTAAATTTGG 998
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 890 GAACTGATGATGAACCTCTGCAGAAGCTCTTTATGTCTGTTAGGAGTGAGCTAAACTTGG 949
Query 999 ACCTGAAGAACATGAAGCAAGAGCAAGCTAAGTTTTGGAAACAGCATCCTGCCATAGTGA 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACCTGAAGAACATGAAGCAAGAGCAAGCTAAGTTTTGGAAACAGCATCCTGCCATAGTGA 1009
Query 1059 AGACCGAGCTGTTGATACAAGCCCAGTTAACTCGTGAATCAGGAGTCCTGTCTCCAGCCC 1118
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1010 AGACGGAGCTGTTGATACAGGCCCAGTTAACTCGTGAATCAGGAGTCCTGTCTCCCGCCC 1069
Query 1119 TTCAGGGTGATTTCAGGCGTGTGCTAGAGCTTGCACCTCGCCTCCTTGAGGAGTTATTGA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TTCAGGGTGATTTCAGGCGTGTGCTAGAGCTTGCACCTCGCCTCCTTGAGGAGTTATTGA 1129
Query 1179 AGATGGCGGTTATACCACGCACTGCCCAAGGGCATGGATGGCTGAGGCCTGCAGTTGGAG 1238
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1130 AGATGGCGGTTATACCGCGCACTGCCCAAGGGCATGGATGGCTGAGACCTGCAGTTGGAG 1189
Query 1239 TAGTTGAGCTATCTCAGTGCATTGTTCAGGCTGTTCCTCTTAGTGCAAGGAAGTCTTCTG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TAGTTGAGCTATCTCAGTGCATTGTTCAGGCTGTTCCTCTTAGTGCAAGGAAGTCTTCTG 1249
Query 1299 GAGTATCATCAGAAGGCATTTCCCCTTTCTTACAGCTCCCTCATTTCAGTGATGCCGTTG 1358
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GAGTATCTTCAGAAGGCATTTCCCCTTTCTTACAGCTCCCTCATTTCAGTGATGCCGTTG 1309
Query 1359 TCAAAAAGATAGCACGGAAGAAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGG 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCAAAAAGATAGCACGGAAGAAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGG 1369
Query 1419 AAGACCGTTCTGAACTACTTACTCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACA 1478
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAGACCGTTCTGAACTGCTCACCCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACA 1429
Query 1479 TTGAGAAGGTGCTAGAAATGATGCCGTCTATTACAGTCGACATCACATGTGAAACAGAAG 1538
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1430 TTGAGAAGGTGCTAGAAATGATGCCGTCTCTTACAGTCGACATCACATGTGAAACAGAAG 1489
Query 1539 GGGAAGAGGGGATCCAAGAGGGAGACATTGTGACCCTTCAAGCTTGGGTCACCCTGAAAC 1598
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1490 GGGAAGAGGGGATCCAAGAGGGTGACATCGTGACCCTTCAAGCTTGGGTCACTCTGAAAC 1549
Query 1599 GACCCAATGGGCTTGTAGGCGCTCTTCCTCATGCACCCTACTTCCCCTTCCACAAGGAGG 1658
||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1550 GACCCAATGGGCTCATAGGCGCCCTTCCTCATGCACCCTACTTCCCTTTCCACAAGGAGG 1609
Query 1659 AAAACTATTGGGTTCTTCTGGCTGATTCAGTGTCGAACAACGTTTGGTTCTCTCAGAAGG 1718
||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1610 AAAACTACTGGGTTCTTCTTGCTGATTCGGTGTCGAACAACGTGTGGTTCTCTCAGAAGG 1669
Query 1719 TTAGCTTCCTGGATGAAGGTGGAGCGATAACGGCTGCATCAAAAGCCATCAGTGAGTCAA 1778
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1670 TAAGCTTCATGGATGAAGGTGGAGCGATAACGGCTGCATCGAAAGCCATCAGTGAGTCAA 1729
Query 1779 TGGAAGGTTCGGGTGCAGGGGTGAAGGAAACAAACGATGCAGTGAGAGAAGCGATTGAGA 1838
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TGGAAGGTTCAGGAGCAGGGGTGAAGGAAACAAACGATGCAGTGAGAGAAGCGATTGAGA 1789
Query 1839 AGGTTAAAGGAGGGTCAAGGCTGGTCATGGGTAAACTCCAAGCACCGGCAGAGGGAACAT 1898
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1790 AGGTTAAAGGCGGGTCAAGGCTGGTAATGGGTAAACTCCAAGCACCGGCAGAGGGAACAT 1849
Query 1899 ACAACTTGACTTGCTTCTGCCTGTGTGACACATGGATCGGGTGTGACAAAAAGCAAGCAC 1958
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1850 ACAACTTGACTTGCTTGTGCCTGTGCGACACATGGATCGGGTGTGATAAAAAGCAAGCAC 1909
Query 1959 TGAAAGTGAAAGTCCTGAAAAGAACCAGGGCAGGGACACGTGGGT-TGGTTTCAGATGAG 2017
|||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 1910 TGAAAGTGAAAGTCCTGAAAAGAACCCGGGCAGGGACACGTGG-TATGGTTTCAGATGAG 1968
Query 2018 GGTGCGATTGCAGAAGAAGGTATGGAGGAGGAAGATGAGATTGAGGAGGAGGATTACGAT 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GGTGCGATTGCAGAAGAAGGTATGGAGGAGGAAGATGAGATTGAGGAGGAGGATTACGAT 2028
Query 2078 GATGATTACGAAAGTGAGTACAGTGAAGATGAGGATGAGAAGAAAGATATGGATGAGAAG 2137
||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 2029 GATGATTACGAAAGTGAGTACAGTGAAGATGAGGATGAGAAGA--GA---GG--G----- 2076
Query 2138 AGAGGGTCGAAGAAGGCCAATGGGAGTGTGAAACAGAAGAAAGAGTCGAGTTCTGAAGAG 2197
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 ------TCGAAGAAGGCCAATGGGAGTGTGAAACAGAAGAAAGAGTCGAGTTCTGAAGAG 2130
Query 2198 TCGGGATCGGAGGAAGAGTGAAACAGAAATGAGATTTTACATTGATAAACAAAACAAAAA 2257
||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 2131 TCGGGATCGGAGGAAGAGTGAAACAGAAAGGAGATTTTACACTGATAAACAAAAAAAAAA 2190
Query 2258 AT 2259
||
Sbjct 2191 AT 2192
> Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1
Length=2322
Score = 1399 bits (757), Expect = 0.0
Identities = 1512/1868 (81%), Gaps = 86/1868 (5%)
Strand=Plus/Plus
Query 151 AAAGATGGCGGCGTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGATTAT 210
||||||||| | |||||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 134 AAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCATTTTTATTTTGACAATGAT 193
Query 211 GGCAATTCCTTTGGTGCCTTACACCA-TGGTCAAGTTAAGCGGTGCTCTCTCCAAGAAAC 269
||||||||| ||||||||||| | || | || ||| ||||| | ||| | || |||||||
Sbjct 194 GGCAATTCCATTGGTGCCTTATA-CATTTGTGAAGCTAAGCCGCGCTTTTTCGAAGAAAC 252
Query 270 AAAGGACCATTCATTGTCAGTGTCTCGAGTGTGACCGTTCTGGAAAATATAAGAGATCC- 328
|| ||| ||| |||||||| ||||| || ||||| ||||| || || || |||||||||
Sbjct 253 AACGGAGCATACATTGTCAATGTCTTGAATGTGATCGTTCAGGGAAGTACAAGAGATCCA 312
Query 329 TTGT-TTAAAAAGATCTCTAACTTCTCTACGTGGAGCAACTTGACACTTGTGCTACTCTG 387
|| | | ||| | ||||||| |||| || | || |||||||||||| |||||||||| ||
Sbjct 313 TT-TCTCAAAGA-ATCTCTAGCTTCACTTCATGTAGCAACTTGACAGTTGTGCTACTTTG 370
Query 388 GGTCGTGATGATTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAG-GCTCAAGTTT 446
| | || ||||| |||||||| ||||||||||||||||| ||||||||| | |||| | |
Sbjct 371 GATTGTAATGATCTTCTTGATCTATTACACTAAGAACATTAGCCGTGAGAG-TCAACTCT 429
Query 447 TTGACCCATTCAGTATACTTGGACTGGAACCTGGAGTTACAGATTCAGAAATAAAGAAAG 506
|||| |||||| ||||||| || ||||||| || | ||||||||||||||| |||||||
Sbjct 430 TTGAGCCATTCGGTATACTCGGGTTGGAACCGGGTGCTACAGATTCAGAAATCAAGAAAG 489
Query 507 CATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGAAGCCAATA 566
|||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 490 CATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCGGATCCAGAAGCCAATA 549
Query 567 AATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAG-TATCCCGT 625
||||||||||||||| |||| ||||||| ||||| ||||||||||| || | ||||||||
Sbjct 550 AATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGA-TCCGTTATCCCGT 608
Query 626 GAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGGGATT-TCA-AATGGGCATTG 683
||||||||||||||||| |||||||| ||||| || ||||| || | | |||||| ||||
Sbjct 609 GAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGGCAGGG-TTAT-ACAATGGGAATTG 666
Query 684 CTCTTCCTCAATTTCTTC-TAGACATTG-ATGGAGCA-TCTGGTGGCATATTATTGCTT- 739
|||||||||||||| || || ||| || |||||| | |||||||| | || ||| ||
Sbjct 667 CTCTTCCTCAATTT-ATCTTAAACA-TGAATGGAG-ACTCTGGTGGGGTGTTGTTG-TTG 722
Query 740 TGGATAGTTGGTGTCTGTATTCTCTTGCCCCTTGTGATTGCTGT-TATATATCTCTCGAG 798
|| | ||||||| | |||||||||||||| || ||||| ||| | || ||||||| |||
Sbjct 723 TGTACAGTTGGTTTATGTATTCTCTTGCCACTCGTGATCGCT-TCGATCTATCTCTGGAG 781
Query 799 GTCATCAAAGTATACTGGGAACT-ACGTTATGCATCAAACACTC-TC-CGCATATTAT-T 854
|||||||||||||||||||| | |||||| || || || |||| || ||||||| |
Sbjct 782 ATCATCAAAGTATACTGGGAA-TCACGTTAAGCTTC-AA-ACTCGTCAAGCATATT-TCG 837
Query 855 A-TCTAATGAAACCCTCTCTGGCCCCAAGCAAAGTTATGGAAGTTTTCACCAAGGCAGCT 913
| | || || ||||| || | | |||||||||||||||||| |||||| ||| ||||||
Sbjct 838 AGT-TATTGCAACCCACTTTAACTCCAAGCAAAGTTATGGAAATTTTCATCAAAGCAGCT 896
Query 914 GAGTACATG--GAGATTCCAGTTCGTAGAACTGATGATGAACCTCTGCAGAAGCTCTTTA 971
|| | ||| |||||||||||||||| ||| ||||||||| |||||||||| |||| ||
Sbjct 897 GA--ATATGCAGAGATTCCAGTTCGTAAAACCGATGATGAATCTCTGCAGAAACTCTATA 954
Query 972 -TGTCTGTTAGGAGTGAACTAAATTTGGA-CCTGAAGAACATGAAGCAAGAGCAAGCTAA 1029
| ||||| | || || |||||| |||| ||| ||||| ||||||||||| |||||||
Sbjct 955 CT-TCTGTCAAGAACGAGCTAAATCTGGACCCT-AAGAAGTTGAAGCAAGAGGAAGCTAA 1012
Query 1030 GTTTTGGAAACAGCATCCTGCCA-TAGTGAAGACCGAGCTGTTGATACAAG-CCCAGTTA 1087
|||||||||| || ||||||| | || | ||||| ||||| ||||||| || ||||||
Sbjct 1013 GTTTTGGAAAAAGAATCCTGCAATTA-TCAAGACTGAGCTTTTGATAC-AGAAACAGTTA 1070
Query 1088 ACTCGTGAATCAGGAGTCCTGTCTCCAG-CCCTTCAGGGTGATTTCAGGCGTGTGCTAGA 1146
|||||||||||| ||| | |||| | | | || || ||||| ||||||||||||||||
Sbjct 1071 ACTCGTGAATCATCAGTTCAGTCT-CTGACTCTGCAACGTGATCTCAGGCGTGTGCTAGA 1129
Query 1147 GCTTGCACCTCGCCTCCTTGAGGAGTT-ATTGAAGATGGCGGTTATACCACGCACTGCCC 1205
| |||| |||||||||||||| || || | ||||||||||||||||||| || | || |
Sbjct 1130 GTTTGCGCCTCGCCTCCTTGAAGATTTGA-TGAAGATGGCGGTTATACCCCGAAATGAAC 1188
Query 1206 AAGGGCATGGATGGCTGA-GGCCTGCAGTTGGAGTAGTTGAGCTATCTCAGTGCATTGTT 1264
|||||| ||||||| | | | |||||| |||||||| | |||||||||||||||||||||
Sbjct 1189 AAGGGCGTGGATGG-TTACGTCCTGCACTTGGAGTAATAGAGCTATCTCAGTGCATTGTT 1247
Query 1265 CAGGCTGTTCCTCTTAGTGCAAGGAAGTCTTCTGGAGTATCATCAGAAGGCATTTCCCCT 1324
|||||||||||||||||||| |||||||| ||| | || |||| |||| | |||
Sbjct 1248 CAGGCTGTTCCTCTTAGTGCGAGGAAGTCATCT----T--CA---GAAGACATTGCTCCT 1298
Query 1325 TTCTTACAGCTCCCTCATTTCAGTGATGCCGT-T-GTCAAAAA-GATAGCACGGAAGAAG 1381
||||| || ||||||||||||| ||| | | | | | | ||| |||||| | | ||
Sbjct 1299 TTCTTGCAACTCCCTCATTTCAATGA-GTC-TATCG-CTAAATCGATAGC--GTT-GCAG 1352
Query 1382 GTTAAATCATTCCAAGA-TCTTCAAGAAATGAGGTTGGAAGACCGTTCTGAACTACTTAC 1440
||||||||||||||| | | |||||||| |||| |||||||| |||||| |||| || |
Sbjct 1353 GTTAAATCATTCCAAAAGT-TTCAAGAACTGAGCTTGGAAGAACGTTCTAAACTGCTCAG 1411
Query 1441 TCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACATTGAGAAGGTGCTAGAAATGAT 1500
|||| ||| || |||||| ||| |||||| | ||||| ||||| ||| ||||||||||
Sbjct 1412 AGAGGTTGCGAGTCTATCAGAAACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATGAT 1471
Query 1501 GCCGTCTATTACAGTCGACATCACATGTGAAACAGAAGGGGAAGAGGGGATCCAAGAGGG 1560
|| ||| ||| | ||||| |||| || |||||||||| ||||| || || ||||| ||
Sbjct 1472 ACCTTCTCTTAAAATCGACGTCACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAAGG 1531
Query 1561 AGACATTGTGACCCTTCAAGCTTGGGTCACCCTGAAACGACCCAATGGGCTTGTAGGCGC 1620
|| ||| |||| ||||| ||||| |||| || ||||| |||||||| || |||||||
Sbjct 1532 CGATATTATGACAGTTCAATCTTGGATCACTCTAAAACGTCCCAATGGACTCATAGGCGC 1591
Query 1621 TCTTCCTCA-TGCACCCTACTTCCCCTTCCACAAGGAGGAAAACTATTGGGTTCTTCTGG 1679
| ||||||| | |||| ||||| || |||||||| |||||||||| |||||||||||| |
Sbjct 1592 TATTCCTCACT-CACCATACTTTCCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCTTG 1650
Query 1680 CTGATTCAGTGTCGAACAACGTTTGGTTCTCTCAGAAGGTTAGCTTCCTGGATGAAGGTG 1739
| |||||| ||||| || ||||||| |||||||||||| ||| ||||||||| |
Sbjct 1651 CGGATTCA------AACAATGTCTGGTTCTTTCAGAAGGTTAGTTTCATGGATGAAGCAG 1704
Query 1740 GAGCGATAACGGCTGCATCAAAAGCCATCAGTGAGTCAATGGAAGGTTCGGGTGCAGGGG 1799
|||| ||| | |||||||| || || || | |||| |||||||| || || ||| | |
Sbjct 1705 GAGCTATAGCCGCTGCATCGAATGCTATTACTGAGACAATGGAACCTTTAGGAGCAAGCG 1764
Query 1800 TGAAGGAAACAAACGATGCAGTGAGAGAAGC-GATTGAGAAGGTTAAAGGAGGGTCAAGG 1858
| ||||||||||| |||||||| | ||| || | |||||||||||||| | ||||| ||
Sbjct 1765 TCAAGGAAACAAATGATGCAGTTAAAGAGGCTG-TTGAGAAGGTTAAAAGTGGGTCGAGA 1823
Query 1859 CTGGTCATGGGTAAACTCCAAGCACC-GGCAGAGGGAACATACAACTTGACTTGCTTCTG 1917
|||| ||||| | |||| |||||| || ||| || ||||| |||||||||||||||||
Sbjct 1824 TTGGTAATGGGGAGACTCTTAGCACCTGG-AGAAGGTACATATAACTTGACTTGCTTCTG 1882
Query 1918 CCTGTGTGACACATGGATCGGGTGTGACAAAAAG-CAAGCACTGAAAGTGAAAGTCCTGA 1976
||| | || || |||||||| |||||| ||||| || |||||||||| || || |||
Sbjct 1883 CCTCAGCGATACTTGGATCGGTTGTGACCAAAAGACAT-CACTGAAAGTTAAGGTTTTGA 1941
Query 1977 AAAGAACC 1984
||||||||
Sbjct 1942 AAAGAACC 1949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87112390315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5