BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79960.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927514 jgi|Araly1|927514|scaffold_203075.1 1299 0.0
> Ahg927514 jgi|Araly1|927514|scaffold_203075.1
Length=916
Score = 1299 bits (703), Expect = 0.0
Identities = 827/886 (93%), Gaps = 11/886 (1%)
Strand=Plus/Plus
Query 1 ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAAAAAGAGACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAACGAGAGACA 80
Query 61 GGGAAGCTGCAACTGTCTTCCTC-ACATTCATTCTCATCCTCAAAGAATTGGGTGCTTGG 119
|||||||||||||||||||| || | |||||||||||||||||||||||||||| |||||
Sbjct 81 GGGAAGCTGCAACTGTCTTCGTCGA-ATTCATTCTCATCCTCAAAGAATTGGGTCCTTGG 139
Query 120 TAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAG 199
Query 180 ATTCAGCAAAGAAGAACCCGTTTACCACCAGGACTCTGCTCACGCCGCCACCTTGTCCGA 239
|||||||||||| || |||||| |||| |||||||| |||||||||||||||||||| ||
Sbjct 200 ATTCAGCAAAGACGACCCCGTTCACCAGCAGGACTCCGCTCACGCCGCCACCTTGTCTGA 259
Query 240 CATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGA 319
Query 300 TGATCAGCATCAAGCCCGGGTGACCAAAAACAAGGAGAAAAGGGAGTCATCATCAGACGA 359
||| |||||||| |||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 320 TGA---GCATCAAGTCCGGCTGACCAAAAACAAGGAGAAAAGGGAATCTTCATCAGACGA 376
Query 360 CAGtgatgatgatgatgatgaCGACGACTATCGTCACAGATTCGAGAGGACATGGGGACA 419
|||||||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 377 CAGTGATGATGACGA------CGACGACTATCGTCACCGATTCGAGAGGACATGGGGACA 430
Query 420 TGCCGTCTACGACTCCCCGAAACAGCCCCCGGATTTGCTGAGAACAGAGAGGCTATCTCC 479
||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||
Sbjct 431 GGCCGTCTACGACTCCCCAAAACAGCCGCCGGATTTGCTGAGGACGGAGAGACTATCTCC 490
Query 480 TCCGCCTGGATCTTCGGAGGGCAGGCCTAGCATGGAAACAACGTCAACATCGTCGGAGAG 539
||| |||||||| |||||||| ||||||||||||||||| ||||| |||||| ||| ||
Sbjct 491 TCCTCCTGGATCATCGGAGGGGAGGCCTAGCATGGAAACGACGTCTACATCGGAGGATAG 550
Query 540 GCAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCGGTGTTAAGATACACGGA 599
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 551 ACAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCAGTGTTAAGATACACGGA 610
Query 600 TGAGCCGCAAGAGGATTTCAGGCAGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGAT 659
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 611 TGAGCCGCAAGAGGACTTCAGGCTGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGAT 670
Query 660 GCGGGAAAGCGAAGTGGATTGGGACTTGATGGAAGAGCTACTCTTCTGCTATCTGGATCT 719
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 671 GCCAGACAGCGAAGTGGATTGGGACTTGATGGAGGAGCTACTCTTCTGCTATCTGGATCT 730
Query 720 CAACGACAAGAAGTCACACAAGTTCATACTAAGCGCTTTCGTCGATCTCATCATTGCTCT 779
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 731 CAACGACAAGAAGTCACACAAGTTCATATTAAGCGCTTTCGTTGATCTCATCATCGCTCT 790
Query 780 TCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGTCATGTGAGGTCGCTCAGTACTCGTGC 839
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 791 TCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGCCTTGTGAGGTCGCTCAGTACTCGCGC 850
Query 840 CGCCAGGGACAGGCTTAGGAAGAGGATGATCATGAGTGACAACTAA 885
|||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 851 AGCCAGGGAGAGGCTGAGAAAGAGGATGATCATGAGTGACAACTAA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5