BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79990.1
Length=3934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927512 jgi|Araly1|927512|scaffold_203073.1 4525 0.0
Ahg474357 jgi|Araly1|474357|fgenesh2_kg.1__4311__AT1G52360.1 1923 0.0
Ahg909718 jgi|Araly1|909718|Al_scaffold_0002_2799 728 0.0
> Ahg927512 jgi|Araly1|927512|scaffold_203073.1
Length=2774
Score = 4525 bits (2450), Expect = 0.0
Identities = 2652/2750 (96%), Gaps = 11/2750 (0%)
Strand=Plus/Plus
Query 906 GCGTAAGTTTGCTCAAAGATCAGAAAGAGTCAAATCTGTAGATCTCCATCCAACAGAGCC 965
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 23 GCGTAAGTTTGCTCAAAGATCCGAAAGAGTCAAATCTGTAGATCTCCATCCCACAGAGCC 82
Query 966 ATGGATCCTGGCAAGTTTGTATTCCGGAACTCTGTGCATCTGGAATTACCAGACCCAGAC 1025
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 83 ATGGATCCTGGCAAGTTTGTATTCCGGAACTGTGTGCATCTGGAATTACCAGACACAGAC 142
Query 1026 AATGGTAAAATCTTTCGACGTGACTGAATTGCCTGTTCGGTCAGCAAAGTTCATTGCACG 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AATGGTAAAATCTTTCGACGTGACTGAATTGCCTGTTCGGTCAGCAAAGTTCATTGCACG 202
Query 1086 GAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACAC 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACAC 262
Query 1146 TATGGATAAGATCAAAGTATTTGAGGCTCATGCTGATTACATTCGCTGTGTTGCTGTTCA 1205
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 263 AATGGATAAGATCAAAGTATTTGAGGCTCATGCTGATTACATTCGTTGTGTTGCTGTTCA 322
Query 1206 TCCCACGCTTCCCTATGTCTTATCATCATCTGATGATATGCTCATCAAGCTCTGGGACTG 1265
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TCCCTCCCTTCCCTATGTGTTATCATCATCTGATGATATGCTCATCAAGCTCTGGGACTG 382
Query 1266 GGAAAAGGGTTGGCTTTGCACTCAAATTTTCGAAGGCCATTCCCATTATGTTATGCAAGT 1325
||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 383 GGATAAGGGTTGGCTCTGCACTCAGATTTTCGAAGGGCATTCCCATTATGTTATGCAAGT 442
Query 1326 CACTTTCAACCCCAAAGACACCAATACTTTTGCTAGTGCATCCCTTGACCGTACCATAAA 1385
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 443 GACTTTCAACCCAAAAGACTCCAATACTTTTGCTAGTGCATCCCTTGACCGTACCATCAA 502
Query 1386 AATATGGAATCTTGGCTCTCCGGATCCAAATTTTACTTTGGATGCACATCTCAAAGGGGT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 503 AATATGGAATCTTGGCTCTCCGGATCCAAATTTTACTTTGGATGCACATCTGAAAGGGGT 562
Query 1446 AAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGA 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGA 622
Query 1506 TCATACTGCTAAGGTGTGGGATTACCAAACAAAGAGTTGCGTTCAGACTCTCGAAGGTCA 1565
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 623 TCATACTGCTAAGGTGTGGGATTACCAAACGAAGAGTTGCGTTCAGACACTTGAAGGTCA 682
Query 1566 TACACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTACCTATAATTATTACAGGATC 1625
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 683 TACACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTCCCAATAATTATTACAGGATC 742
Query 1626 CGAGGATGGAACTGTTCGCATATGGCACGCCACCACTTACAGGCTTGAGAATACATTGAA 1685
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 743 CGAGGATGGAACTGTTCGTATATGGCATGCCACCACTTACAGGCTTGAGAATACATTGAA 802
Query 1686 CTATGGCCTTGAGAGGGTTTGGGCTATTGGACACATTAAAGGTTCACGCCGGGTTGTAAT 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CTATGGCCTTGAGAGGGTTTGGGCTATTGGACACATTAAAGGTTCACGCCGGGTTGTAAT 862
Query 1746 TGGTTATGACGAAGGATCCATAATGGTGAAACTTGGCCGTGAAATACCAGTGGCTAGTAT 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TGGTTATGACGAAGGATCCATAATGGTGAAACTTGGCCGTGAAATACCAGTGGCTAGTAT 922
Query 1806 GGATAACAGCGGAAAAATTATTTGGGCTAAACACAATGAGATACATACTGTAAACATCAA 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GGATAACAGCGGAAAAATTATTTGGGCTAAACACAATGAGATACATACTGTAAACATCAA 982
Query 1866 GAGTGTGGGCGCAGATGAGGTCACTGATGGTGAGAGACTTCCTTTGGCCGTTAAAGAGCT 1925
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 983 GAGTGTGGGCGCAGATGAGGTCACTGATGGTGAGAGACTGCCTTTGGCTGTTAAAGAGCT 1042
Query 1926 AGGGACCTGCGATCTTTATCCTCAAAGCTTGAAGCACAACCCTAATGGTAGGTTTGTGGT 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1043 AGGGACCTGCGATCTTTATCCTCAAAGCTTGAAGCACAACCCTAATGGTAGGTTTGTAGT 1102
Query 1986 AGTTTGTGGAGATGGTGAGTATATTATCTACACTGCCTTGGCGTGGCGAAATAGGTCATT 2045
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1103 TGTTTGTGGAGATGGTGAGTACATCATCTACACTGCCTTGGCGTGGCGAAATAGGTCATT 1162
Query 2046 TGGCTCTGCGCTAGAATTTGTTTGGTCATCTGATGGGGAGCATGCTGTCAGGGAAAGCTC 2105
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TGGCTCTGGGCTGGAATTTGTTTGGTCATCTGATGGGGAGCATGCTGTCAGGGAAAGCTC 1222
Query 2106 GACAAAGATCAAGATCTTCAGCAAGAATTTCCAGGAAAAGAAGACTGTGAGACCCACCTT 2165
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1223 GACAAAGATCAAGATTTTCAGCAAGAATTTCCAGGAAAAGAAGACTGTGAGACCCACTTT 1282
Query 2166 CTCAGCAGAGCACATTTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATG 2225
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1283 CTCAGCAGAGCACATTTTTGGTGGGACGTTATTGGCAATGTGCTCAAGTGATTTTATCTG 1342
Query 2226 CTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAAATCT 2285
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1343 CTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTTAAAAATCT 1402
Query 2286 TTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATACATCATTCTACATCCT 2345
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1403 TTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATTCATCATTCTACATCCT 1462
Query 2346 TAAGTTCAATCGTGACATTGTTTCCTCTTATTTTGATGGCGGTAAACAAATTGATGAGGA 2405
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 TAAGTTTAATCGCGAGATTGTTTCCTCTTATTTTGATGGCGGTAAACAAATTGATGAGGA 1522
Query 2406 AGGCATTGAGGACGCATTTGAGCTTCTCAATGAAACCAATGAACGTGTTCGGACTGGCTT 2465
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1523 AGGCATTGAAGACGCATTTGAGCTTCTCAATGAAACCAATGAACGTGTTCGGACAGGCTT 1582
Query 2466 ATGGGTTGGGGATTGTTTTATCTATACCAACTCTTCTTGGAGGCTTAATTACTGTGTTGG 2525
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1583 ATGGGTTGGGGATTGTTTTATCTATACCAACTCTTCTTGGAGGCTTAACTACTGTGTTGG 1642
Query 2526 TGGTGAGGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGC 2585
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1643 TGGTGAGGTAACGACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTTGC 1702
Query 2586 TAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAATGTTATTGGATACACTTTACT 2645
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TAATCAAAGCCGGGTTTATTTGATTGACAAAGAGTTCAATGTTATTGGATACACTTTACT 1762
Query 2646 TTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGA 2705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 TTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGA 1822
Query 2706 AGTCTTACCTTCAATTCCTAAGGAGCACCATAATAGCGTGGCACACTTTTTGGAGTCACG 2765
| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1823 AATCTTACCTTCAATTCCTAAGGAGCATCATAATAGCGTGGCACACTTTTTGGAATCACG 1882
Query 2766 TGGCATGACAGAAGATGCTCTAGAAGTAGCAACTGATCCTGACTACAGATTTGAGTTGGC 2825
||| |||||||||||||||||| | ||||| ||||| ||||| |||||||||||||||||
Sbjct 1883 TGGTATGACAGAAGATGCTCTACAGGTAGCTACTGACCCTGATTACAGATTTGAGTTGGC 1942
Query 2826 CATACAGCTCGGTAGATTGGCTGTCGCAAAGGACATTGCTGTAGAGGCACAAAATGAATC 2885
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1943 CGTACAGCTCGGTAGATTGGCGGTCGCAAAGGACATTGCTGTAGAGGCACAAAATGAGTC 2002
Query 2886 TAAATGGAAGCAACTTGGAGAATTAGCTATGTCAAGTGGGAAGCTGGATATGGCTGAGGA 2945
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2003 TAAATGGAAGCAACTTGGAGAATTAGCTATGTCCACTGGGAAGCTGGATATGGCTGAGGA 2062
Query 2946 ATGCATGAGGCATGCTATGGATTTGAGTGGTCTGCTGCTGCTTTATTCTTCATTGGGAGA 3005
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2063 ATGCATGAGGCATGCTATGGATTTGAGTGGACTGTTGCTGCTTTATTCTTCATTGGGAGA 2122
Query 3006 TGCAGATGGAATGATGAAGCTGGCAGCACTTGCAAAAGAGCAAGGAAAGAACAATGTCGC 3065
|||||| ||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct 2123 TGCAGAGGGATTGATGAAGCTGTCAGCACTTGCCAAAGAGCAAGGAAAGAATAATGTCGC 2182
Query 3066 TTTTCTTTGCTTGTTCATGTTGGGTCAAGTAGAAGACTGCCTGCATCTGTTGGTGGAAAG 3125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2183 TTTTCTTTGCTTGTTCATGTTGGGTCAAGTAGAAGACTGCCTGCATCTGTTGGTGGAAAG 2242
Query 3126 TAATCGAATACCTGAAGCCGCTCTGATGGCGA-GATCGTACCTTCCAAGCAAGGTCTCCG 3184
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2243 TAATCGAATACCTGAAGCCGCTCTGATGGC-ACGATCGTACCTTCCAAGCAAGGTCTCCG 2301
Query 3185 AAATAGTGGCATTGTGGAGAAACGATTTGACCAAGATAAGTCCAAAGGCTGCTGAATCTC 3244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2302 AAATAGTGGCATTGTGGAGAAATGATTTGACCAAGATAAGTCCAAAGGCTGCTGAATCTC 2361
Query 3245 TGGCTGATCCCGAAGAGTATCCCAATCTCTTTGAGGAGTGGCAAGTCGCCCTGTCCCTTG 3304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2362 TGGCTGATCCCGAAGAGTATCCCAATCTCTTTGAGGAGTGGCAAGTCACCCTGTCCCTTG 2421
Query 3305 AAAATAGAGCTGCAGAGACGAGGGGCGTCCATCCTCCTGCTGGGGATTATTGTAGTCATG 3364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2422 AAAATAGAGCTGCAGAGACAAGGGGCGTCCATCCTCCTGCTGGGGATTATTGTAGTCATG 2481
Query 3365 CAGACAGAGATCATACAACTTTAGTGGATGCTTTTAGAATTATGCAAATAGAGGAAGAGG 3424
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2482 CAGACAGAGATCATACAACTTTGGTGGAAGCTTTTAGAATTATGCAAATAGAGGAAGAGG 2541
Query 3425 GTCGACTTGAGCAAGGGGATGTTCTCGACgaggttggggaagagggggaagatggagagg 3484
| |||||||||||||||||||| |||||||| ||||||||||||| | || ||| ||
Sbjct 2542 GGGGACTTGAGCAAGGGGATGTTGTCGACGAGTTTGGGGAAGAGGG--A-GA-GGA-AG- 2595
Query 3485 aagaggaggaggaggatcgtcaggaagagagtagtgatgggagaCAGCAGAATGTGGAAG 3544
| ||||| | || | ||| |||||||||||||||||||||||| || |||||||||||||
Sbjct 2596 AGGAGGATG-GG-G-ATCATCAGGAAGAGAGTAGTGATGGGAGGCAACAGAATGTGGAAG 2652
Query 3545 AAGAGGCTGTTGTGGTGGACGCTGACTCTACGGATGGTGCTGTGCTAGTTAATGGTAACG 3604
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2653 AAGAGGCCGTAGTGGTGGACGCTGACTCTACGGATGGTGCTGTGCTAGTTAATGGGAACG 2712
Query 3605 AGTCTGAAGAACAGTGGGTTCTAACACCGCCACAAGAGTAGGGTTGGTGA 3654
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2713 AGTCTGAAGAACAGTGGGTTCTAACACCGCCACAGGAGTAGGGTTGGTGA 2762
> Ahg474357 jgi|Araly1|474357|fgenesh2_kg.1__4311__AT1G52360.1
Length=3337
Score = 1923 bits (1041), Expect = 0.0
Identities = 2009/2475 (81%), Gaps = 71/2475 (3%)
Strand=Plus/Plus
Query 892 AGACTCGAAATCAAGCGTAAGTTTGCTCAAAGATCAGAAAGAGTCAAATCTGTAGATCTC 951
|||||||| |||||| | || || |||||||| || || ||||| |||||||| |||||
Sbjct 129 AGACTCGAGATCAAGAGAAAATTAGCTCAAAGGTCCGAGAGAGTTAAATCTGTGGATCTG 188
Query 952 CATCCAACAGAGCCATGGATCCTGGCAAGTTTGTATTCCGGAA-CTCTGTGCATCTGGAA 1010
||||| || || |||||||| || |||||||||||||| |||| || |||| || |||||
Sbjct 189 CATCCTACTGAACCATGGATTCTTGCAAGTTTGTATTCTGGAACCT-TGTGTATTTGGAA 247
Query 1011 TTACCAGACCCAGACAATGGTAAAAT-CTTTCGACGTGACTGAATTGCCTGTTCGGTCAG 1069
|||||||| ||| |||| ||||| |||| || ||||| ||||| || |||||||| |
Sbjct 248 CTACCAGACACAGGTGATGGCAAAATCCTTT-GAGGTGACCGAATTACCAGTTCGGTCGG 306
Query 1070 CAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTG 1129
| ||||| || ||||| |||||||||||||| || ||||||||||| |||| ||| ||||
Sbjct 307 CCAAGTTTATAGCACGAAAGCAGTGGGTTGTGGCAGGAGCTGATGATATGTATATCCGTG 366
Query 1130 TCTACAACTACAACACTATGGATAAGATCAAAGTATTTGAGGCTCATGCTGATTACATTC 1189
| ||||| ||||| || ||||| ||| | ||||| |||||||||||| |||| ||||||
Sbjct 367 TATACAATTACAATACCATGGACAAGGTTAAAGTCTTTGAGGCTCATTCTGACTACATTA 426
Query 1190 GCTGTGTTGCTGTTCATCCCACGCTTCCCTATGT-CTTATCATCATCTGATGATATGCTC 1248
| ||||| ||||||||||| || ||||| ||||| | | ||||| |||||||||||||||
Sbjct 427 GGTGTGTGGCTGTTCATCCAACCCTTCCATATGTGC-TGTCATCTTCTGATGATATGCTC 485
Query 1249 ATCAAGCTCTGGGACTGGGAAAAGGGTT-GGCTTTGCACTCAAATTTTCGAAGGCCATTC 1307
|| ||||| ||||||||||||||||||| ||| ||||||||| || ||||| || || ||
Sbjct 486 ATAAAGCTTTGGGACTGGGAAAAGGGTTGGGC-TTGCACTCAGATATTCGAGGGACACTC 544
Query 1308 CCATTATGTTATGCAAGTCAC-TTTCAACCCCAAAGACACCAATACTTTTGCTAGTGCAT 1366
|| ||||| |||||||| || ||| || || ||||||||||| |||||||| |||||||
Sbjct 545 GCACTATGTGATGCAAGTTACATTT-AATCCAAAAGACACCAACACTTTTGCCAGTGCAT 603
Query 1367 CCCTTGACCGTACCATAAAAATATGGAATCTTGGCTCTCCGGATCCAAATTTTACTTTGG 1426
| ||||| ||||||||||| || ||||||||||| || || || ||||||||||| ||||
Sbjct 604 CACTTGATCGTACCATAAAGATTTGGAATCTTGGTTCCCCAGACCCAAATTTTACATTGG 663
Query 1427 ATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTT-ACTGGTGGGGATAAACCATAC 1485
|||| |||| |||||||| || |||||||| || ||| |||||||| ||||| || ||
Sbjct 664 ATGCCCATCAGAAAGGGGTTAATTGTGTAGATTA-TTTCACTGGTGGTGATAAGCCCTAT 722
Query 1486 CTAATCACTGGTTCTGATGATCATACTGCTAAGGTGTGGGATTACCAAACAAAGAGTTGC 1545
|||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 723 TTAATTACTGGCTCTGATGATCACACTGCTAAGGTCTGGGACTACCAAACAAAAAGTTGT 782
Query 1546 GTTCAGACTCTCGAAGGTCATACACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTA 1605
|| ||||| || ||||| || ||||||||||| |||||||||| ||| |||||||||||
Sbjct 783 GTCCAGACCCTGGAAGGGCACACACACAATGTATCTGCAGTATGTTTCCATCCAGAGCTT 842
Query 1606 CCTATAATTATTACAGGATCCGAGGATGGAACTGTTCGCATATGGCACGCCACCACTTAC 1665
|| || || || ||||| || || ||||| || |||||||| ||||| || || || |||
Sbjct 843 CCGATTATAATCACAGGTTCTGAAGATGGCACCGTTCGCATTTGGCATGCAACTACATAC 902
Query 1666 AGGCTTGAGAATACATTGAACTATGGCCTTGAGAGGGTTTGGGCTATTGGACACATTAAA 1725
||||| ||||| |||||||| |||||||| ||||| || ||||| ||||| ||||||||
Sbjct 903 AGGCTAGAGAACACATTGAATTATGGCCTCGAGAGAGTCTGGGCAATTGGTTACATTAAA 962
Query 1726 GGTTCACGCCGGGTTGTAATTGGTTATGACGAAGGATCCATAATGGTGAAACTTGGCCGT 1785
|||||||||||||||| || || ||||| |||||| |||| ||||| |||||||| ||
Sbjct 963 AGTTCACGCCGGGTTGTGATCGGATATGATGAAGGAACCATCATGGTTAAACTTGGACGA 1022
Query 1786 GAAATACCAGTGGCTAGTATGGATAACAGCGGAAAAATTATTTGGGCTAAACACAATGAG 1845
||||| || || ||||| ||||| || | ||| ||||| || |||||||| || |||||
Sbjct 1023 GAAATTCCTGTCGCTAGCATGGACAATACCGGGAAAATCATCTGGGCTAAGCATAATGAA 1082
Query 1846 ATACATACTGTAAACATCAAGAGTGTGGGCGCAGA-T--GAGGTCACTGATGGTGAGAGA 1902
|| || |||| ||||||||| ||| | || ||||| | ||||| |||||||| |||||
Sbjct 1083 ATTCAAACTGCAAACATCAAAAGTATTGGTGCAGATTACGAGGTTACTGATGGAGAGAG- 1141
Query 1903 CTT-CCTTTG-GCCGTTAAAGAGCTAGGGACCTGCGATCTTTATCCTCAAAGCTTGAAGC 1960
|| || ||| | ||||||||| | |||||||| ||||||||||| |||||||||||||
Sbjct 1142 GTTGCCCTTGAG-TGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAAGCTTGAAGC 1200
Query 1961 ACAACCCTAATGGTAGGTTTGTGGTAGTTTGTGGAGATGGTGAGTATATTATCTACACTG 2020
||||||||||||| |||||||| ||||| ||||| || || || ||||| |||||||| |
Sbjct 1201 ACAACCCTAATGGGAGGTTTGTCGTAGTCTGTGGTGACGGGGAATATATAATCTACACGG 1260
Query 2021 CCTTGGCGTGGCGAAATAGGTCATTTGGCTCTGCG-CTAGAATTTGTTTGGTCATCTGAT 2079
| ||||| ||| |||||||||||||||| |||| | || |||||||||||||| || ||
Sbjct 1261 CTTTGGCTTGGAGAAATAGGTCATTTGGTTCTG-GACTGGAATTTGTTTGGTCGTCCGA- 1318
Query 2080 GGG-GAGCATGCTGTCAGGGAAAGCTCGA-CAAAGATCAAGATCTTCAGCAAGAATTTCC 2137
||| ||| ||| || || |||||||| | ||||||| || || || ||||| |||||||
Sbjct 1319 GGGAGAGTGTGCGGTTAGAGAAAGCTC-ATCAAAGATTAAAATATTTAGCAAAAATTTCC 1377
Query 2138 AGGAAAAGAAGACTGTGAGACCC-ACCTTCTCAGCAGAGCACATTTTTGGTGGGACGTTA 2196
||||||||| || | | | ||| || || ||||| ||| | || ||||| || || ||
Sbjct 1378 AGGAAAAGAGGAGTATCCG-CCCTACGTTTTCAGCTGAGAAGATCTTTGGAGGAACCTTG 1436
Query 2197 TTGA-CAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGAT 2255
|| | | ||||| ||||||||||| || ||||| ||||||||||| ||||||||| ||||
Sbjct 1437 TT-AGCTATGTGTTCAAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGAT 1495
Query 2256 T-AGGCGAATAGATGTTACTGTCAAA-AATCTTTATTGGGCGGACAGTGGTGATCTAGTT 2313
| | || || || || ||||| ||| ||||| |||||||| |||||||||||| ||||
Sbjct 1496 TCA-ACGTATTGACGTCACTGT-AAAGAATCTATATTGGGCTGACAGTGGTGATTTAGTA 1553
Query 2314 GCAATTGCCAGTGATACATCATTCTACATCCTT-AAGTTCAATCGTGACATT-GTTTCCT 2371
|| ||||| ||||| |||||||||||||| ||| || | ||| || ||| || |||||||
Sbjct 1554 GCCATTGCTAGTGACACATCATTCTACAT-CTTGAAATACAACCGCGAC-TTAGTTTCCT 1611
Query 2372 CTTATTTTGATGGCGGTAA-ACAAATTGATGAGGAAGGCATTGAGGACGCATTTGAGCTT 2430
| |||||||| |||| || || | ||| || ||||| ||||||| || |||||| ||
Sbjct 1612 CACATTTTGATAGCGG-AAGACCTACTGAGGAAGAAGGTGTTGAGGATGCTTTTGAGGTT 1670
Query 2431 CTCAATGAAACCAATGAACGTGTTCGGACTGGCT-TATGGGTTGGGGATTGTTTTATCTA 2489
||| |||||| ||||||||||| |||| || | |||||||||| || ||||| || ||
Sbjct 1671 CTCCATGAAAATGATGAACGTGTTAGGACAGG-TATATGGGTTGGTGACTGTTTCATTTA 1729
Query 2490 TACCAACTCTTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTATCA 2549
| ||||||||| |||| |||||| ||||||||||| || |||||||| |||||||||||
Sbjct 1730 CAACAACTCTTCCTGGAAGCTTAACTACTGTGTTGGAGGCGAGGTAACCACAATGTATCA 1789
Query 2550 TCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAA-TCAAAG-CAGGGT-TTATTT 2606
| ||||||| || ||||| |||||||| ||||| || || |||||| | |||| || ||
Sbjct 1790 TTTGGACCGCCCAATGTATTTGTTGGGCTATCTTGC-AAGTCAAAGTC-GGGTGTT-CTT 1846
Query 2607 GATTGACAAAGAGTTCAATGTTATTGGATACACTTTACTTTTAAGTTTGATTGAGTACAA 2666
| | |||||||| ||||||||||| |||||||| || || |||| |||||||||||||
Sbjct 1847 GGTAGACAAAGAATTCAATGTTATAGGATACACCTTGCTGCTAAGCCTGATTGAGTACAA 1906
Query 2667 GACTCTTGTGATGCGTGGAGATTTGGAAC-AGGCTAATGAAGTCTTACCTTCAATTCCTA 2725
||||||||||||||| || ||||| | || | || | |||| |||||||| |||||||||
Sbjct 1907 GACTCTTGTGATGCGGGGTGATTTAG-ACAAAGCCAGTGAAATCTTACCTACAATTCCTA 1965
Query 2726 AGGAGCACCATAATAGCGTGGCACACTTT-TTGGAGTCACGTGGCATGACAGAAGATGCT 2784
| || || ||||| || || || || ||| ||||||||||| || |||| |||||||||
Sbjct 1966 AAGATCAGCATAACAGTGTTGCTCA-TTTCTTGGAGTCACGGGGAATGATTGAAGATGCT 2024
Query 2785 CTAGAAGTAGCAACTGATCCTGACTACAGATTTGAGTTGGCCATACAGCTCGGTAGA-TT 2843
|| ||| | ||||| |||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 2025 CTGGAAATTGCAACAGATCCTGACTACAGATTTGAGTTGGCCATACAACTGGGTAGACTT 2084
Query 2844 GGC-TGTCGCAAAGGACATTGCTGTAGAGGCACAAAATGAATCTAAATGGAAGCAACTT- 2901
| | | ||| |||| || || || || | ||| | ||||||||| ||||||||| ||
Sbjct 2085 GAAAT-T-GCACAGGAAATCGCCGTGGAAGTACAGAGTGAATCTAAGTGGAAGCAA-TTA 2141
Query 2902 GGAGAATTAGCTATGTCAAGTGGGAAGCTGGATATGGCTGAGGAATGCATGAGGCATGCT 2961
||||| ||||| ||||| ||| |||||| | ||||||||||||||||||| | |||||
Sbjct 2142 GGAGAGTTAGCCATGTCTTCTGGAAAGCTGCAAATGGCTGAGGAATGCATGAAGTATGCT 2201
Query 2962 ATGGATTTGAGTGGTCTGCTGCTGCTTTATTCTTCAT-TGGGAGATGCAGATGGAATGAT 3020
||||||||||||||| || | |||||||||||||| | |||||||||| || || ||
Sbjct 2202 ATGGATTTGAGTGGTTTGTTACTGCTTTATTCTTC-TCTGGGAGATGCTGAAGGTGTGGC 2260
Query 3021 GAAGCTGGCAGCACTTGCAAAAGAGCAAGGAAAGAACAATGTCGCTTTTCTTTGCTTGTT 3080
|| || ||| ||||||| ||||| ||||| |||||||||||||| ||||||||| | ||
Sbjct 2261 AAAACTTGCAACACTTGCTAAAGAACAAGGGAAGAACAATGTCGCCTTTCTTTGCCTATT 2320
Query 3081 CATGTTGGGTCAAGTAGAAGACTGCCTGCA-TCTGTTGGTGGAAAGTAATCGAATACCTG 3139
|||| ||||| || | ||||| || |||| | | |||||||| || || || ||||| |
Sbjct 2321 CATGCTGGGTAAACTGGAAGATTGTTTGCAGT-TATTGGTGGAGAGCAACCGGATACCAG 2379
Query 3140 AAGCCGCTCTGATGGCGA-GATCGTACCTTCCAAGCAAGGTCTCCGAAATAGTGGCA-TT 3197
|||| ||||||||||| | |||| || ||||| ||||| || || || ||||| || ||
Sbjct 2380 AAGCTGCTCTGATGGC-ACGATCATATCTTCCGAGCAAAGTTTCTGAGATAGTAGCTCTT 2438
Query 3198 GTGGAG-AAACGATTTGACCAAGAT-AAGTCCAAAGGCTGCTGAATCTCTGGCTGATCCC 3255
||||| ||| ||| | | |||| | || || |||| | || |||||| ||||||||||
Sbjct 2439 -TGGAGGAAA-GATCTCAGCAAGGTTAATTCAAAAG-CAGCAGAATCTTTGGCTGATCCT 2495
Query 3256 GAAGAGTATCCCAA-TCTCTTTGAGGAGTGGCAAGTCGCCCTGTCCCTTGAAAATAGAGC 3314
|| ||||| ||||| ||| ||||| || |||||||| || || || | ||| ||||||
Sbjct 2496 GAGGAGTA-CCCAAATCTTTTTGAAGATTGGCAAGTAGCTCTTTCTGTCGAAGCTAGAGC 2554
Query 3315 TGCAGAGACGAGGGG 3329
|| |||||| |||||
Sbjct 2555 TGTAGAGACAAGGGG 2569
> Ahg909718 jgi|Araly1|909718|Al_scaffold_0002_2799
Length=459
Score = 728 bits (394), Expect = 0.0
Identities = 432/451 (96%), Gaps = 0/451 (0%)
Strand=Plus/Plus
Query 238 ATGTTCTATGGCACAGCTGTATGGGACCCTTGGCTTATCGTTGGCCAGATTATTTGCCTC 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTCTATGGCACAGCTGTCTGGGACCCTTGGCTTATCGTTGGCCAGATTATTTGCCTC 60
Query 298 CAATGCTCTTACTATCTCACTCTTGGACTCTTCACCATGGTCTTTCTTGGCCTTCGTGTT 357
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CAGTGCTCCTACTATCTCACTCTTGGTCTCTTCACCATGGTCTTTCTTGGCCTTCGTGTT 120
Query 358 CCTCGCCTTAGTCTTGTCTACTTCTTCGATTACGCTACTCTCACTACTTCCACCTTCACC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCGCCTTAGTCTTGTCTACTTCTTCGATTACGCTACTCTCACTACTTCCACCTTCACC 180
Query 418 GGTTGGTCTGTTATTGCCTCATTCCTCTTCTCTTCACTCGCTGGGGCTGTGTACATGATA 477
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 181 GGTTGGTCTGTTATTGCCTCTTTCCTCTTCTCTTCACTCGCAGGGGCTGTCTACATGATA 240
Query 478 TTTTTGGTGGAGCGAGCACGGAAATGCTTAGATTTCTCTGCAACTCTCTACATCATACAT 537
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TTTTTGGTGGAACGAGCTCGGAAATGCTTAGATTTCTCTGCAACTCTCTACATCATTCAT 300
Query 538 CTCTTCTTTTGCATCATGTATGGAGGATGGCCTTCCTCTATGGCGTGGTGGGTTGTTAAT 597
|||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTCTTCTTCTGCATCTTGTATGGAGGATGGCCTTCCTCTATGGCTTGGTGGGTTGTTAAT 360
Query 598 GGAACCGGACTCGCTGTTATGGCTTTGCTAGCTGAGTACTTGTGCATTAAACGCGAACAG 657
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAACTGGTCTCGCTGTTATGGCTTTGCTAGCTGAGTACTTGTGCATTAAACGCGAACAG 420
Query 658 CGAGAGATCCCTATGGATCGCTTCCACTCAA 688
| |||||| ||||||||||| ||||| ||||
Sbjct 421 CAAGAGATTCCTATGGATCGGTTCCATTCAA 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148690937711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5