BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80000.1
Length=2345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477260 jgi|Araly1|477260|fgenesh2_kg.2__2390__AT1G80000.2 2361 0.0
> Ahg477260 jgi|Araly1|477260|fgenesh2_kg.2__2390__AT1G80000.2
Length=1933
Score = 2361 bits (1278), Expect = 0.0
Identities = 1553/1681 (92%), Gaps = 37/1681 (2%)
Strand=Plus/Plus
Query 529 GACTCTGCCGCCACTGATCTTGTGGATGGAGAGGAACAAAAGAAGAAGGAACCTTTTGCA 588
||||||| | || |||||||||| ||||||||| | || ||||||||||||||||| |||
Sbjct 231 GACTCTG-C-CC-CTGATCTTGTTGATGGAGAGCACCATAAGAAGAAGGAACCTTTCGCA 287
Query 589 GTGCCTACTGCTGGAGCTTTCTATATGCATGATGACAGATTTCAGG-AATTGGATGCCGC 647
||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 288 GTGCCAACTGCTGGAGCTTTCTATATGCATGATAACAGATTTCAGGAAATT-GATGCCGC 346
Query 648 CTCTAATAGGCGAATGCGTGGTGGTAGGAGGCTCTGGCAATCCAGAGATGAAAGAAAGTG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CTCTAATAGGCGAATGCGTGGTGGTAGGAGGCTCTGGCAATCCAGAGATGAAAGAAAGTG 406
Query 708 GGGACATGACAAATTCGAGGAAATGAATACA-CAGAAACAGCAATATGATAGGAGGACTT 766
|||||||||||||| |||||||||||||||| | |||| |||||||||||||| ||||||
Sbjct 407 GGGACATGACAAATACGAGGAAATGAATACACCGGAAA-AGCAATATGATAGGCGGACTT 465
Query 767 CGAGAGGCCGAGGCAGAGGTCGTGGTCAGGGTAGGGGTCAGGACCGTGGACAGTCTCGGG 826
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 466 CGAGAGGCCGAGGCAGAGGTCGTGGTCAGGGTAGGGGTCAGGATCGTGGACATTCTCGAG 525
Query 827 GGAACAATTCTAAAGAATTTACTGGCAATGGACACCAAAATCAGTTTCCGAAGGCTGTCA 886
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 526 GGAACAATTCTAAAGAATTTACTGGCAATGGACACCAAAATCAGCTTCCTAAGGCTGTCA 585
Query 887 CGAGAGGGAGGGGGGCCAGAAGATATGAGGTTGCATTGAGAAATGGGAATCAAGCACCTT 946
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CGAGAGGGAGGGGCCCCAGAAGATATGAGGTTGCATTGAGAAATGGGAATCAAGCACCTT 645
Query 947 CTGTGCAAACCAAACAGTCCCAAAATTCGTCTGTGGAAGTGTCACACGTTGATTTAGGGC 1006
||||||||||||||| |||||||||||||| |||| |||||||||||||| ||| |||||
Sbjct 646 CTGTGCAAACCAAACGGTCCCAAAATTCGTTTGTGAAAGTGTCACACGTTAATTCAGGGC 705
Query 1007 GTCCACCAACAGAAACAGCTACCTTAGAGACTGAAGCCATCCAAGCCAAAAAGAATGTAT 1066
|||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 706 TTCCACCAACAGAAACAGCTAGCATAGAGACCGAAGCCATCCAAGCCAAAAAGAATGTAT 765
Query 1067 TTGCTTCAAGTTTAAATTCAGCTTCTCCTCCATTTTATCCTTCAAGATCCAACAATAACT 1126
| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 766 TAGCTTCAAGTTTAAATTCAGCTTCTCCTCCATTTTATCCTTCAGGATCCTCCAATAACT 825
Query 1127 TGGCACAAAAGGATGTACAAGCTGGCATGGGTAGGCTGCACATTAATGAAAACCCTAATC 1186
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 826 TGGCACAAAAGGATGTACAAGCTGGCATGGGTAGACTGCACATTAGTGAAAACCCTACTC 885
Query 1187 CGACTGGAAAGAAGTTTGGGAATACAAAATCCAGCTCCTTGTGGG----GAC-G--C-A- 1237
||||||||||||||||||||||||||||||||||||| ||||||| || | | |
Sbjct 886 CGACTGGAAAGAAGTTTGGGAATACAAAATCCAGCTCTTTGTGGGTACCCACTGCTCAAC 945
Query 1238 CTGCTCAGACTACAAGTCATGGTAGAGGTGTACCTCCTCATGGGCAAGTGCTTTACCAGC 1297
|| ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 946 CTTCTCAGACTACAAGTCATGGTAGAGGTGCACCTCCTCGTGAGCAAGTGCTTTACCAGC 1005
Query 1298 AATCTCCTAATCAAGGTGACAAAGTTTCTTCGCCGATGCAAATCCGTGGAATGCCTAAAG 1357
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||
Sbjct 1006 AATCTCCTAATCAAGGTGACAAAGTTTCTCCGCCAATGCAAATCCGGGGAATGCCAAAAG 1065
Query 1358 GCACTGACCAGAGCTGTACTCAACTTCCTGGTCAGGTTTTTAATCAACATTCGGCTGTTA 1417
|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1066 GCACTGACCAAAGCTGTACTCAACTTCCTGGTCAGGCTTTTGATCAACATTCGGCTGTTT 1125
Query 1418 TCAGTTTGCTGCCTTCTTCTCCTCCAAAAACCGGATCATCAGAAAATCC-GTATCTTTCT 1476
|||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||
Sbjct 1126 TCAGTTTGCTGCCTTCTTCTCCACCAAAAACCGGATCATCA-AAAAACCAGTATCTTTCT 1184
Query 1477 GGTGAAATAGAGTCAGCCGTAGAAACAGGTGCTTTGGTTGCCAAGGGAAAAGGGTCTCTC 1536
||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||
Sbjct 1185 GGTGAAATAGAGTCAGCCGCAGAAACCGGTGCTCTGGTTGCCAAGGGAAAAGGGTCACTC 1244
Query 1537 CAACCTAGTGGAAGGGGATCTTTTATGTATGGAGGGACACAGTTTATGGGCCCTGCCGGG 1596
|| |||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 1245 CAGCCTACTGGAAGGGGACCTTTGATGTATGGAGGGACACAGTTTATGGGGCCTGCCGGG 1304
Query 1597 ATGGCAGCTGGTCACGGCAATCCAAATTTCCCTGCTTTTCTACCTGTTATGCAATTCGGT 1656
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1305 ATGGCAGCTGGTCATGGCAATCCAAATTTCCCTGCTTTTCTGCCTGTTATGCAATTCAGT 1364
Query 1657 GGTCAGCATGGTGGGGTTCCAACTTTTGGAATGGCTCTTCCAGGTTATTTCCAACCAGAA 1716
||||||||||| |||||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 1365 GGTCAGCATGGCGGGGTTCCCACCTTTGGAATGGCTCTTCCAGGATATGTCCAACCAGAA 1424
Query 1717 CATGGTACCGGAAATCCTGAGATGACATGGCTGCCAATTTTGGCTGGCCCTGGAGCATTA 1776
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1425 CACGGTACCGGAAATCCTGAGATGACATGGCTGCCAATTTTGGCTGGCCCCGGAGCATTA 1484
Query 1777 GGGGGTTCATATTGTCCACCTTATACTGTCCTTGATGGTTCTTACCAAGCAGACAAACCA 1836
|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 1485 GGGGGTTCATATTGTCCACCTTATGCTGCCCTTGATGGTTCTTACCAAGCACACAAACCA 1544
Query 1837 GGGTTACCTTCCTCTGCCGGATCGTCCAGCCAAGAGAACAGTTCCAATAATCCTAATGAT 1896
||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||
Sbjct 1545 GGGTTACCTTCCTCTGCGGGATCCTCCAGCTATGAGAACAGTTCCAATAATCCTAATGAT 1604
Query 1897 GAAGAGCCCATGGAGAGACCTGAGGTTACGAACAATGGGAATTCTCAACGGTCAAATAGC 1956
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1605 GAAGAGCCCATGGATAGACCTGAGGTTACAAACAATGGGAATTCCCAACGGTCAAATAGC 1664
Query 1957 AACCCAAACAAGCAGCCTCGTAGATACTCGGAGATGAGCTTTAGCAAGTGAGTAAAGAAG 2016
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1665 AACCAAAACAAGCAGCCTCGTAGATACTCGGAGATGAGCTTTAGCAAGTGAGTGAAGAAG 1724
Query 2017 AGTGGAAAGGAAGAAGGTCATCTAATTTGACTAAGTGGAGTGAAAGGAGGAGGGTGAGAG 2076
|||| |||||||| | || |||| ||||| ||||||||||||||||||| | ||||||
Sbjct 1725 AGTGCAAAGGAAG--G-TCGTCTAGTTTGAATAAGTGGAGTGAAAGGAGG-G--TGAGAG 1778
Query 2077 AGAAGAGCTCCTTAGGAGCAGCAGGCCCTTGGTGCTTCTCCAA-CTGC-T--TT-ATGAA 2131
||||| |||||||| |||||||||| |||||||||||||| |||| | || | | |
Sbjct 1779 AGAAG--CTCCTTAG---CAGCAGGCCCCTGGTGCTTCTCCAAGCTGCCTGATTTAAGGA 1833
Query 2132 GCCGTTTGGGCTGCTATTATTGTTACCTATTTTTATTAGGAGGTTGTTGTGCAATTGAAA 2191
|| ||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||
Sbjct 1834 GCAGTTTGGGCTGCTATTGTTG---CCTATTTTGATTAGGAGGTTGTTGTGCAATTAAAA 1890
Query 2192 A 2192
|
Sbjct 1891 A 1891
Score = 154 bits (83), Expect = 3e-36
Identities = 126/145 (87%), Gaps = 9/145 (6%)
Strand=Plus/Plus
Query 188 TGATGGCCCCTGATGGCGTTGAAGA---CTCCGACTATGAGAGTGATCCCGACGAGTTGA 244
|||||||||||| |||||||||||| | ||||||| ||||||||||||||||| ||||
Sbjct 1 TGATGGCCCCTGTTGGCGTTGAAGACCCCCCCGACTACGAGAGTGATCCCGACGAATTGA 60
Query 245 ACCGCTCCTTGGCTACACGGAGGAGAGAAGCCAGCGATGATGATGAGGATGATGAAGAAG 304
| ||||||||||||||||||||||||||||||||||||||||| || || |||| | |
Sbjct 61 ATCGCTCCTTGGCTACACGGAGGAGAGAAGCCAGCGATGATGAGGACGACCATGAT-A-G 118
Query 305 CGGACGACCATGATAAGCTGCGAGC 329
|||| | ||||||||||||||||
Sbjct 119 -GGAC--C-ATGATAAGCTGCGAGC 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88331278155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5