BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80030.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927508 jgi|Araly1|927508|scaffold_203069.1 2248 0.0
> Ahg927508 jgi|Araly1|927508|scaffold_203069.1
Length=1520
Score = 2248 bits (1217), Expect = 0.0
Identities = 1420/1515 (94%), Gaps = 25/1515 (2%)
Strand=Plus/Plus
Query 106 GCTTCTCCCTCCCTCATCCCCTCTTCTCTCTGCTTCGCTGCCGCCGCCGATGGTCC-CCG 164
|||||||||||||||||||||||||||||||||||| ||||||| |||| | | || |||
Sbjct 24 GCTTCTCCCTCCCTCATCCCCTCTTCTCTCTGCTTCCCTGCCGCTGCCGCT-G-CCGCCG 81
Query 165 TTCC-CT-CTCTTC-TAATTTCTCTGCCT-TTTCCGACGGCGGTTCCAATTTCAGGTATC 220
|| | || | | ||||| || ||||||||||||| ||||| |||||||||
Sbjct 82 --CCGATGGTCCGCGTTCCCTCTCT-TCTAATTCCGACGGCGGTACCAATCTCAGGTATC 138
Query 221 ACAAGAGCTTCTTGTCGCTTTCATCTTCGTCTTCTTCGTCTACGCCTTATCGAAATCGAC 280
||||||||||||| | | | ||| || ||||| | | ||||||||||||||||||
Sbjct 139 ACAAGAGCTTCTTAT--C---C--CTT--TCATCTTC-T-T-CGCCTTATCGAAATCGAC 186
Query 281 GGGGCCGTTCCCTCGTCGTATTTGCTACTTCCGGAGACTACTACGCCACTCTCGGTGTCT 340
||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||
Sbjct 187 GGGGCCGTTCCCTCGTCGTGTTTGCTGCTTCCGGAGACTACTATGCTACTCTCGGTGTCC 246
Query 341 CTAAATCTGCCAATAACAAGGAGATTAAAGCTGCTTATCGACGGCTCGCTCGTCAGTATC 400
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 247 CTAAATCTGCCAATAACAAGGAGATTAAAGCCGCGTATCGACGCCTCGCTCGTCAGTATC 306
Query 401 ATCCCGATGTGAACAAGGAACCCGGAGCAACTGAAAAATTCAAGGAAATCAGTGCTGCCT 460
|||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||||
Sbjct 307 ATCCCGATGTGAACAAAGAACCTGGCGCAACTGACAAGTTCAAGGAAATCAGTGCTGCCT 366
Query 461 ATGAGGTGCTATCAGACGAGCAAAAGAGAGCATTATATGATCAATATGGTGAAGCCGGTG 520
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 ATGAGGTGCTATCAGATGAGCAAAAGAGAGCATTATATGATCAATATGGTGAAGCCGGAG 426
Query 521 TCAAGAGTACAGTAGGAGGAGCTTCTGGTCCTTACACGTCAAATCCCTTTGACCTTTTCG 580
|||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 427 TCAAGAGTACTGTAGGAGGAGCTTCTGGTACTTACACGACAAATCCCTTTGACCTTTTCG 486
Query 581 AGACATTCTTTGGTGCAAGTATGGGTGGATTTCCCGGGATGGACCAAGCTGATTTTGGGA 640
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 487 AGACATTCTTTGGTGCGAGTATGGGTGGATTTCCCGGGGTGGACCAAGCTGATTTTGGGA 546
Query 641 GAACCCGCCGCAGTAGGGTTACCAAAGGTGAAGATTTACGGTATGACATCACCTTAGAAC 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GAACCCGCCGCAGTAGGGTTACCAAAGGTGAAGATTTACGGTATGACATCACCTTAGAAC 606
Query 701 TTTCGGAGGCTATTTTTGGATCTGAGAAAGAATTTGATCTTACGCATCTGGAGACATGTG 760
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 TGTCAGAGGCTATTTTTGGATCTGAGAAAGAATTTGATCTTACGCATCTGGAGACATGCG 666
Query 761 AAGCTTGTGCTGGCACCGGGGCAAAAGCAGGATCCAAGATGAGAATATGCTCCACTTGTG 820
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 667 AAGCTTGTGCTGGCACTGGGGCAAAAGCAGGATCCAAGATGCGAATATGCTCCACTTGTG 726
Query 821 GTGGGCGGGGTCAAGTTATGAGAACTGAGCAAACACCATTTGGCATGTTTTCACAGGTTT 880
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 727 GTGGGCGGGGTCAAGTTATGAGAACTGAGCAAACACCATTTGGGATGTTTTCACAGGTTT 786
Query 881 CTATATGTCCAAACTGTGGTGGAGATGGTGAGGTGATTTCTGAAAATTGCCGGAAATGTT 940
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 787 CTATATGTCCCAACTGTGGTGGAGATGGTGAGGTAATTTCTGAAAATTGCCGGAAATGCT 846
Query 941 CTGGAGAAGGGCGTGTGCGTATaaaaaaaaGCATCAAAGTCAAAATTCCCCCGGGAGTTA 1000
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CTGGAGAAGGACGTGTGCGTATAAAAAAAAGCATCAAAGTCAAAATTCCCCCGGGAGTTA 906
Query 1001 GTGCAGGTAGCATCCTTAGAGTCGCCGGAGAAGGTGATTCTGGTCCCAGAGGTGGCCCTC 1060
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 907 GTGCAGGTAGCATCCTAAGAGTTGCCGGAGAAGGTGATTCTGGTCCCAGAGGTGGCCCTC 966
Query 1061 CAGGAGATTTGTATGTATATCTTGATGTTGAAGATGTCCGGGGAATTGAAAGAGATGGCA 1120
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 967 CAGGAGATTTGTACGTATATCTTGATGTTGAAGATGTCCGGGGAATTCAAAGAGATGGCA 1026
Query 1121 TAAACCTATTATCTACCCTTTCGATCAGTTACCTTGATGCTATACTGGGTGCTGTTGTTA 1180
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1027 TAAACCTTTTATCTACCCTTTCGATCAGTTACCTTGATGCTATACTGGGTGCGGTTGTTA 1086
Query 1181 AGGTGAAAACAGTTGAAGGAGACACTGAACTGCAGATACCTCCAGGTACACAACCTGGTG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 AGGTGAAAACAGTTGAAGGAGACACTGAACTGCAGATACCTCCAGGTACACAACCTGGTG 1146
Query 1241 ATGTGCTAGTCCTGGCAAAGAAAGGAGTACCGAAACTGAATAGACCGTCTATCCGCGGTG 1300
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1147 ATGTGCTGGTCCTGGCAAAGAAAGGAGTACCAAAACTGAATAGACCATCTATCCGCGGTG 1206
Query 1301 ACCACTTGTTTACAGTCAAAGTTTCTGTACCAAATCAAATAAGTGCTGGAGAACGGGAGT 1360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1207 ACCACTTGTTTACAGTCAAAGTTTCTATACCAAATCAAATAAGTGCTGGAGAACGGGAGT 1266
Query 1361 TGCTGGAGGAACTTGCATCTCTGAAGGACACGTCCAGCAACCGCTCACGAACTCGTGCTA 1420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1267 TGCTGGAGGAACTTGCATCTCTGAAGGACACGTCCAGCAACCGGTCACGAACTCGTGCTA 1326
Query 1421 AGCCTCAGCAACCCAGTACTCTGAGCACTGCACCCAGTGGCTCAGAAAACAAGAAAGATG 1480
||||||||||| ||||| ||||||||| |||||||||| ||| |||||||| || |||||
Sbjct 1327 AGCCTCAGCAAACCAGTTCTCTGAGCAGTGCACCCAGTAGCTTAGAAAACAGGACAGATG 1386
Query 1481 AAGTTAAGGAGGAAAATGAAGAACCGGAGCAAGAAAACTACTTGTGGAATAACATCAAAG 1540
||||| | |||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 1387 AAGTT--G-AGGAAAATGAAGAAGCGGAGCAAGAAAACGACTTGTGGAAAAACATCAAAG 1443
Query 1541 AATTTGCAGGGTCTGTCGCAAATGGAGCTCTAAAATGGCTGAGAGATAACCTCTAGAGAT 1600
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1444 ATTTTGCAGGGTCTGTCGCAAATGGAGCTCTGAAATGGCTGAGAGATAACCTCTAGAGAT 1503
Query 1601 CCATCTTCAACTAAC 1615
|||||||||||||||
Sbjct 1504 CCATCTTCAACTAAC 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5