BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80040.3
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477252 jgi|Araly1|477252|fgenesh2_kg.2__2382__AT1G80040.1 1075 0.0
> Ahg477252 jgi|Araly1|477252|fgenesh2_kg.2__2382__AT1G80040.1
Length=1148
Score = 1075 bits (582), Expect = 0.0
Identities = 766/850 (90%), Gaps = 32/850 (4%)
Strand=Plus/Plus
Query 429 CACAGGTTCTCGTCAAGGCACTAGAAGATAATGGAAGTGATTTTAATGCTGCTATGAAGA 488
||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 292 CAC-GGTTCTTGTCAAGGCACTAGAAGAAAATGGAAGTGATTTGAATGCTGCTATGAAGA 350
Query 489 GCTTATACTCTTTCGCATCTTCTGAGGAG-AAGAAAGCTGAAGAATTGGCCGCAGGAGGT 547
|||||||||| | ||| | |||||||| ||| |||||||||||| |||||||| |
Sbjct 351 GCTTATACTCCATGGCAGCCGCTGAGGAGAAAG-AAGCTGAAGAATCCTCCGCAGGA-G- 407
Query 548 GCTGCTACTCAGGAAACTGATGCCGTTTGTGGTGGAAACCCCCCGACCAGTGGTGATGAC 607
| ||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 408 G-TGCTAATCAGGAAACTGATGCCGTTTCTGGAGGAAATCCCCCGACCAGTGGTGATGAC 466
Query 608 TGGGTTGAATTGTTAGTCAGGGAAGTGTTACAATCGTCTGGTACAGATGATGCAAAAGTA 667
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 467 TGGGTTGAATTGTTAGTTAGGGAAGTGTTACAATCTTCTGGTACAGATGATGCAAAAGTA 526
Query 668 CGTGCAGCAAGAGTCCTTGAGGCCTTAGAGAAGATGTTAAGTGCACGTGCTCGTGAAGAA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CGTGCAGCAAGAGTCCTTGAGGCCTTAGAGAAGATGTTAAGTGCACGTGCTCGTGAAGAA 586
Query 728 GCTGGAAACAAATTCCAAGAGGAGAAAGTGGCAGTGCAGCAACAGGTGGAGACCTTGGTG 787
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 587 GCTGCAAAAAAATTCCAAGAGGAGAAAGTGGCAGTGCAGCAACAGGTGGAGGCCTTGGTC 646
Query 788 AAGGACAACACAGTCCTCAAACGTGCTGTTGCTATCCAGCATGAGCGGCAGAAGGCATTG 847
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AAGGACAACACAGTCCTAAAACGTGCTGTTGCTATCCAGCATGAGCGGCAGAAGGCATTC 706
Query 848 GAGGATGCGAACCATCAGCTAGGACTTTTGAAGCAACTGGTTCCTCAGTATCAGGAAAAG 907
|| ||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||
Sbjct 707 GAAGATGCGAACCAGCAGCTAGAACTTTTGAAGCAACTGATTCCTCAGTACCAGGAAAAG 766
Query 908 CTTAGAAATCTGGAGGTGAACAATTACGCGTTGAGAATGCAGCTGCAGCAAGTGGAACAT 967
|| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 767 CTAAGAACTCTGGAGGTGAACAACTACGCGTTGAGAATGCAGCTGCAGCAAGTGGAACAT 826
Query 968 GGCAACTCAATGCCAGCAAGATTCAATCCGGACGTCTTCTAAAGCTCTCCAAGAAGACAA 1027
|||||||| ||||||| ||||||||| || |||||||||||| |||||||||||| ||||
Sbjct 827 GGCAACTCCATGCCAGGAAGATTCAACCCAGACGTCTTCTAAGGCTCTCCAAGAA-ACAA 885
Query 1028 GGACACTTGCAGAGGAGGAGAAGGCAATAAACGAAAGTAGAGGgagaga--gagagagag 1085
|||||||||||| | || | | ||||||||||||||||||||||||||| |||||||||
Sbjct 886 GGACACTTGCAG-G-AG-A-A-GGCAATAAACGAAAGTAGAGGGAGAGAAAGAGAGAGAG 940
Query 1086 agCGA-T-ATCAAACTACAAAACAAAAGTGCTTTTGCATTGTA--A-TACTGTGTAGTCA 1140
|| || | |||||||||||||||||||| ||||| || ||||| | |||||||||||||
Sbjct 941 AGAGAGTGATCAAACTACAAAACAAAAGCGCTTT-GCGTTGTATTACTACTGTGTAGTCA 999
Query 1141 GGACAAACAAACATTCTGTTTCCTTTCCttttttttttATATATTTC-TTTGGTTTGCTG 1199
||||||||||||||| | ||| ||| |||||||||| | | ||| ||||||||||||
Sbjct 1000 GGACAAACAAACATTTTTTTTTTTTTTTTTTTTTTTTTCT-TCTTTTATTTGGTTTGCTG 1058
Query 1200 CTGTTTGTCT--------CAGGCGCATTTATTTTGGAAATCAAGGATGTGT-TTTGGTAC 1250
|||||||||| |||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 1059 CTGTTTGTCTGTGGTGATCAGGCGCATTAATTG-GGAAATCAAGGATGTGTGTTTGGTAC 1117
Query 1251 ATAGGGCTGT 1260
||||| ||||
Sbjct 1118 ATAGGACTGT 1127
Score = 279 bits (151), Expect = 3e-74
Identities = 172/181 (95%), Gaps = 5/181 (3%)
Strand=Plus/Plus
Query 226 GGCCATGTCTGCCGTATATTGCGGAACCAAGAGATCTTACTTCGACGATAATT-CTTCTC 284
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 118 GGCCATGTCTGCCGTATATTGCGGAACCAAGAGATCTTACTTCGACGAT-ATTCCTTCTC 176
Query 285 CGCCCTCTTCTAAGAGGTTCCGATGTTTTTCGCCTTCCAATTCTCCAATCTGGTCCTCTC 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CGCCCTCTTCTAAGAGGTTCCGATGTTTTTCGCCTTCCAATTCTCCAATCTGGTCCTCTC 236
Query 345 C-TC-C-TTCCTCATCGCTCGATCAGCTTCACTCTGCGTTTCCTCATATTGAACTCACGG 401
| || | ||||||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct 237 CCTCTCCTTCCTCATCGCTCGATCAGCTTCGCACTTCGTTTCCTCATCTTGAACTCACGG 296
Query 402 T 402
|
Sbjct 297 T 297
Score = 119 bits (64), Expect = 6e-26
Identities = 99/113 (88%), Gaps = 14/113 (12%)
Strand=Plus/Plus
Query 17 AAAAGG-AAACCCAATCGAAAACCTAAAACCCGATTAGATTTTCTTAGATACGAAACCTC 75
|||||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 AAAAGGAAAACCC-ATCGAAAACCTAAAACCCGATTAGATTTT-T-AGATACGAAACCTC 57
Query 76 TCTTACGACGCTCCTTCCTCAATCTCTCTCGATCGTCGGAGAtt-ctttcttc 127
| | | ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 58 T-T--C-----TCCTTCCTCAATCTCTCTCGATCGTCGGAGATTTCTT-CTTC 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5