BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80050.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927506 jgi|Araly1|927506|scaffold_203067.1 933 0.0
> Ahg927506 jgi|Araly1|927506|scaffold_203067.1
Length=625
Score = 933 bits (505), Expect = 0.0
Identities = 578/613 (94%), Gaps = 6/613 (1%)
Strand=Plus/Plus
Query 51 GAGTGAGTGAGAGATGTTTGCCGTGGAGAATGGGTTGCAGGGAGACCCGAGATTAAAGGC 110
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 9 GAGTGAGTGCGAGATGTTTGCCGTGGAGAATGGGTTGCAGGGAGACCCAAGATTAAAGGC 68
Query 111 CATCTCCGACGCCATTCGTGTCATTCCTCACTTCCCCAAGACTGGGATCATGTTTCAGGA 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CATCTCCGACGCCATTCGTGTCATTCCTCACTTCCCCAAGACTGGGATCATGTTTCAGGA 128
Query 171 CATAACAACGTTGTTGCTGGATCCAGTTGCCTTTAAACATGTCGTCGACATCTTCGTTGA 230
||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 129 CATAACAACTTTGTTGCTGGATCCAGTTGCCTTCAAACATGTCGTTGATATCTTCGTTGA 188
Query 231 TCGTTACAAGCACATGAACATCTCTCTCGTCGCCGGAGTAGAGGCGAGAGGATTCATATT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCGTTACAAGCACATGAACATCTCTCTCGTCGCCGGAGTAGAGGCGAGAGGATTCATATT 248
Query 291 TGGACCTCCCATCGCGTTAGCCATAGGTGCCAAGTTCGTTCCACTACGCAAACCGGGAAA 350
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 249 TGGACCGCCCATCGCGTTAGCCATAGGTGCCAAGTTCATTCCACTGCGCAAACCGGGAAA 308
Query 351 ACTACCCGGGAGAGTGATAAGCGAAGAGTACGAACTTGAGTATGGAAGAGATTGTCTAGA 410
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 309 ACTACCCGGGAAAGTGATAAGCGAAGAGTACGAGCTTGAGTATGGAAGAGATCGTCTAGA 368
Query 411 GATGAGTGTAGAAGCCGTCAAATCGGAGGAACGAGCTCTCATCATCGACGATTTAGTTGC 470
||||||||| || || || ||||| || ||| |||||||| |||||||||||||||||||
Sbjct 369 GATGAGTGTGGAGGCTGTGAAATCCGACGAAAGAGCTCTCGTCATCGACGATTTAGTTGC 428
Query 471 CACTGGTGGGACACTCTCTGCTTCCATTAACCTCTTGGAGCGTGCCGGGGCCGAAGTTGT 530
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 429 CACTGGTGGGACACTCTCTGCTTCCATTAGCCTCTTGGAGCGCGCCGGGGCCGAAGTTGT 488
Query 531 AGAGTGTGCATGCGTTGTTGGTTTGCCTAAGTTTAAGGGGCAGTGTAAGCTGAAGGGAAA 590
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 489 AGAGTGTGCATGCGTTGTTGGTTTGCCTAAGTTTAAGGGGCAATGTAAGCTGAAGGGAAA 548
Query 591 GCCTTTGTACGTTCTGGTGGAACCAAACCAGTTTGATGAATTAAC--C-TTATAA--AAG 645
||| |||||||| |||||||| |||| |||||||||||| ||||| | |||||| |||
Sbjct 549 GCCGTTGTACGTGCTGGTGGAGCCAAGCCAGTTTGATGATTTAACAACCTTATAAGCAAG 608
Query 646 CCTTTT-CTATTC 657
| |||| ||||||
Sbjct 609 CGTTTTTCTATTC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5