BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80060.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927505 jgi|Araly1|927505|scaffold_203066.1 1240 0.0
> Ahg927505 jgi|Araly1|927505|scaffold_203066.1
Length=773
Score = 1240 bits (671), Expect = 0.0
Identities = 741/775 (96%), Gaps = 4/775 (1%)
Strand=Plus/Plus
Query 45 AAAATCCGGGAGAATCGGCAATGCGAGAAGAGCATAGTCCGGTTAGGGACGGTCGTCGAA 104
|||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 1 AAAATCTGGGAGAATCGGCAATGCGAGAGGAGCATAGTCCGGGTAGGGGCGGTCGTCGAA 60
Query 105 GTGGAGGACTGAGGTCGTTGATAGATCCACGCTTCTTGTCATCGTTTGCTTTAAACGACG 164
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 61 GTGGAGGACTGAGGTCGTTGATAGAGCCACGCTTTTTGTCATCGTTTGCTTTAAACGACG 120
Query 165 GTGGTTCGATTTCTGGACGGAGATCTTCCTACCTGAAACTTCCTCCTCAGGGTCGTATCA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGGTTCGATTTCTGGACGGAGATCTTCCTACCTGAAACTTCCTCCTCAGGGTCGTATCA 180
Query 225 AGCTTTCCGTCGTTAAGCTCAACGGCTCCCTTTTCGATGTGGAAGTTGCAAAGGATTGCT 284
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 181 AGCTTTCCGTCGTTAAGCTCAACGGTTCCCTTTTCGATGTCGAAGTCGCAAAGGATTGCT 240
Query 285 CAGTGGCAGAGCTCAAAAGAGCTGTGGAACAAGTATTCACCATTTCTCCTCTGGAAGGTC 344
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGTGGCAGAGCTCAAAAGAGCTGTGGAACAAGTATTCACCATTTCTCCTCTGGAAGGTC 300
Query 345 ACGGCATGATTTCATGGTCTCACGTCTGGGGTCATTTTTGCTTGTGTTATCGAGACCAGA 404
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGGCATGATTTCATGGTCCCACGTCTGGGGTCATTTTTGCTTGTGTTATCGAGACCAGA 360
Query 405 GATTAGTCAATGACAAGACTAGCATCCGTTATCTCGGTCTCAATGATGGAGACCAATTAC 464
||||||||||||||||||| |||||||||||||||| ||||| ||| || ||||||||||
Sbjct 361 GATTAGTCAATGACAAGACGAGCATCCGTTATCTCGCTCTCAGTGACGGGGACCAATTAC 420
Query 465 ATTTCGTAAGGCATTTGTCGATAGACCACTCTCCTATGAACAAAAGATCCAAGAGCCCGA 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTTCGTAAGGCATTTGTCGATAGACCACTCTCCTATGAACAAAAGATCCAAGAGCCCGA 480
Query 525 GTTGCAAGCGGTACCTCGAGTTGGATGTGTCATCCATTGTCAACGAAATCCAAATACAAA 584
|||||||||| || ||||||||||| ||| ||||| ||||||||||||||| ||||||
Sbjct 481 GTTGCAAGCGCTATCTCGAGTTGGAAGTGGAATCCAACGTCAACGAAATCCAACTACAAA 540
Query 585 ACCAAAACCAGAACGGTGTGGATGATGTAGCTGAGAAGTGTTATCCAGGAGCACAAGACG 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 ACCAAAACCAGAACGGTGTGGATGATGTAGCTGACAAGTGTTATCCAGGAGCACAAGACG 600
Query 645 AGTTACCGGCAGCAGAATCCAGACTAGTTAACTTAATTAAAGGATGGTTGCCATATGCTG 704
||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 AGTTACCAGCAGCAGAATTCAGACTAGTTAACTTAATTAAAGGATGGTTGCCGTATGCTG 660
Query 705 GACGTTGGGGAGTTTCCAGAAAAGGACCCGAGT-GTCGCAGTGGTCCCT-CCAGATTTTC 762
||||||||||||| ||||||||||||||||| | |||||||||| |||| ||||||||||
Sbjct 661 GACGTTGGGGAGTGTCCAGAAAAGGACCCGA-TAGTCGCAGTGG-CCCTACCAGATTTTC 718
Query 763 TTTGAAGCATTTCGGTGGCAGACCCAAGATGTAAATCCGTAAGTCACAACCTCTT 817
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGAAGCATTTCGGTGGCAGACCCAAGATGTAAATCCGTAAGTCACAACCTCTT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5