BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80080.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927503 jgi|Araly1|927503|scaffold_203064.1 2211 0.0
> Ahg927503 jgi|Araly1|927503|scaffold_203064.1
Length=1498
Score = 2211 bits (1197), Expect = 0.0
Identities = 1385/1475 (94%), Gaps = 16/1475 (1%)
Strand=Plus/Plus
Query 11 AACAACAACAACT--AAGAAATGGCACGATATGAATTCTTCCGCCAAATATTCATTGTCT 68
||||||||| ||| || ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 AACAACAACTACTAAAAAAAATGGCACAATATGAACTCTTCCGCCAAATATTCATTGTCT 60
Query 69 TGTCTATAGTTTCTCCGTTGGTCAGATCTTTCACTGTGATCACCTCCGACTCGACGGCCC 128
|||| ||| |||||||||| ||||||| |||||| ||||||||||||||||||||||| |
Sbjct 61 TGTCGATAATTTCTCCGTTAGTCAGATGTTTCACCGTGATCACCTCCGACTCGACGGCGC 120
Query 129 CATCTGCTCTGATCGACGGCCCACAAACTGGATTCACGATGACCAATGACGGCGCTCGCA 188
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 121 CATCTGCTCTGATCGACGGCCCCCAAACTGGATTCACGATGACCAACGACGGCGCTCGCA 180
Query 189 CGGAGCCTGACGAGCAAGACGCCGTCTACGACATTATGCGTGCGACCGGCAACGACTGGG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGAGCCTGACGAGCAAGACGCCGTCTACGACATTATGCGTGCGACCGGCAACGACTGGG 240
Query 249 CTGCCGCGATTCCAGACGTTTGCCGAGGGAGATGGCACGGGATCGAGTGTATGCCGGACC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCCGCGATTCCAGACGTTTGCCGAGGGAGATGGCACGGGATCGAGTGTATGCCGGACC 300
Query 309 AGGATAACGTCTACCACGTGGTCTCTCTGTCGTTCGGAGCGCTCTCAGACGACACGGCGT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGATAACGTCTACCACGTGGTCTCTCTGTCGTTCGGAGCGCTCTCAGACGACACGGCGT 360
Query 369 TTCCGACTTGTGATCCACAACGCTCTTACGTCTCTGAGTCCCTCACGAGGCTCAAACACC 428
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TCCCCACTTGTGATCCACAACGCTCTTACGTCTCCGAGTCCCTCACGAGGCTCAAACACC 420
Query 429 TCAAAGCCTTGTTCTTCTACCGATGTTTAGGCCGCGCCCCACAGCGCATACCGGCGTTTC 488
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 TCAAAGCCCTGTTCTTCTACCGCTGTTTAGGCCGCGCCCCACAGCGCATACCGGCGTTTC 480
Query 489 TGGGACGCCTCGGCTCGAGTCTGCAAACGCTGGTTCTGAGGGAGAATGGTTTTTTGGGAC 548
|||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 481 TGGGCCGTCTCGGTTCGAGTCTGCAAACGCTGGTTCTGAGGGAGAATGGCTTTTTCGGTC 540
Query 549 CTATCCCTGACGAATTGGGCAATCTCACCAATTTGAAAGTTCTTGATTTGCATAAAAATC 608
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CTATCCCTGACGAATTGGGCAATCTTACCAATTTGAAAGTTCTTGATTTGCATAAAAATT 600
Query 609 ACCTCAACGGCTCCATTCCCTTGTCGTTCAACCGGTTCTCCGGTTTAAGATCGCTTGATT 668
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 ATCTCAACGGCTCCATTCCCTTGTCGTTTAACCGGTTCTCCGGTTTAAGATCGCTTGATT 660
Query 669 TGAGTGGTAACCGGTTGACTGGTTCCATTCCCGGTTTTGTTCTTCCGGCGCTGAGCGTTC 728
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 661 TGAGTGGGAACCGGTTGACTGGTTCCATTCCCGGTTTTCTTCTTCCGGAGCTGAACGTTC 720
Query 729 TGGATTTGAACCAGAATCTTTTAACCGGACCGGTTCCACCCACACTCACAAGCTGTGGAT 788
|||||||||||||||||||||| ||||||||||||||| |||||||| | | ||||||||
Sbjct 721 TGGATTTGAACCAGAATCTTTTGACCGGACCGGTTCCATCCACACTCTCGACCTGTGGAT 780
Query 789 CGTTGATCAAAATCGATCTTAGCCGAAACAGAGTCACTGGTCCTATCCCAGAATCGATTA 848
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 CGTTGATCAAAATCGATCTTAGCCGAAACAGAGTCACTGGTCCTATCCCAGACTCGATTA 840
Query 849 ACCGGCTCAACCAATTAGTGCTTTTGGATTTGAGCTATAACCGGTTATCAGGTCCATTCC 908
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCGGCTCAACCAATTAGTGCTTCTGGATTTGAGCTATAACCGGTTATCAGGTCCATTCC 900
Query 909 CGTCTTCTCTCCAAGGCCTAAACTCTCTTCAAGCTTTAATGCTCAAAGGCAACACAAAAT 968
|| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 901 CGCCTTCTCTCCAAGGTCTAAACTCTCTTCAAGCTTTGATGCTCAAAGGCAATACAAAAT 960
Query 969 TCTCAACAACGATTCCTGAAAACGCGTTCAAAGGGCTCAAGAACTTGATGATTCTTGTTC 1028
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 TCTCAACAACGATTCCTGAAAACGCGTTCAAAGGGCTCAAGAACTTGATGGTTCTTGTTC 1020
Query 1029 TCTCGAATACGAA-CATCCAGGGCTCGATACCGAAATCATTGACTCGGTTAAACAGTCTT 1087
|||| |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTCAAATATGAATC-TCCAGGGTTCGATACCGAAATCATTGACTCGGTTAAACAGTCTT 1079
Query 1088 CGGGTCCTTCACCTAGAGGGCAATAATCTGACCGGAGAGATTCCTTTGGAGTTCCGGGAC 1147
||||| |||||| | |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1080 CGGGTACTTCACATGGAGGGCAACAATCTGACCGGGGAGATTCCTTTGGAGTTTAGGGAC 1139
Query 1148 GTGAAGCATCTAAGCGAGCTGAGGCTCAACGATAACAGTCTGACAGGACCAGTACCGTTC 1207
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 GTGAAGCATCTAAGCGAGCTGAGGCTCAACGATAACAGTCTGACAGGTCCAGTACCGTTC 1199
Query 1208 GAGAGAGACACAGTGTGGAGGATGAGGAGAAAGCTGAGGCTGTATAACAATGCTGGTTTG 1267
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 GAGAGAGATACAGTGTGGAGGATGAGGAGAAAGCTGAGGCTGTATAACAATGCCGGTTTG 1259
Query 1268 TGTGTTAACCGGGACAGTGACTTGGATGATGCATTCGGTTCAAAATCTGGTTCAACTGTA 1327
||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1260 TGTCTGAACCGGGACAGTGACTTGGATGATGCATTCGGTTCAACATCTGGTTCAAGTGTC 1319
Query 1328 AGATTGTGTGATGCAGAAACGTCGAGACCAGCTCCTTCCGGTACGGTCCAGCACCTATCT 1387
|| ||||||| || ||||||| | ||||||| ||||||||||||||| || || ||||||
Sbjct 1320 AGGTTGTGTGTTGGAGAAACGCCTAGACCAGGTCCTTCCGGTACGGTACAACATCTATCT 1379
Query 1388 AGAGAAGAAGACGGTGCTTTGCCGGACGGAGCTACGGACGTGTCAAGCACTTCCAAGTCT 1447
|||||||||||||||| | |||||| | || ||||||||| ||||||||||
Sbjct 1380 AGAGAAGAAGACGGTGGTATGCCGG--G---CT-------TGTCAAGCAGTTCCAAGTCT 1427
Query 1448 TTGGGGTTCTCCTATCTTTCTGCATTCTTTCTTGT 1482
||||||||||||||||||||||||||| |||||||
Sbjct 1428 TTGGGGTTCTCCTATCTTTCTGCATTCGTTCTTGT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5