BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80090.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477249 jgi|Araly1|477249|fgenesh2_kg.2__2379__AT1G80090.1 839 0.0
> Ahg477249 jgi|Araly1|477249|fgenesh2_kg.2__2379__AT1G80090.1
Length=1070
Score = 839 bits (454), Expect = 0.0
Identities = 565/618 (91%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 8 ATATGAATAATGAAGT-AACTACGAAAGCATCAAAACAAAGATTAGAAGTTCATAAGCCT 66
|||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||
Sbjct 6 ATATGAATAATGAAGTAAACTATGAAAGCATCAAAACAAAGATTAGAAGTTAATCAGCCT 65
Query 67 CGTCCCATTTT-CTT-TGAGACTTTGACTATCACCCAAATAC-AAATCTTCATGCAGTCG 123
||||||||||| ||| || ||| || || | || ||| || ||| || |||||| |||
Sbjct 66 CGTCCCATTTTCCTTCTG-GAC--TGGCTCTGTCCAAAACACAAAACCTCCATGCATTCG 122
Query 124 TACAGCCGTCTGATGCAGTTCAAGGTCAAAGATCTGATGATCGACAAGCGGCGGCTGGTC 183
|||||||| |||||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 123 CACAGCCGTTTGATGCAGCTCAAGGTCAAACATCTGATGGTCCACAAGCGGCGGCTGGTC 182
Query 184 GAAGTTCCTGATAATGCCACTCTAGGGGACGCCTTGAACACTATGACTATTCTTGGTATC 243
|||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 183 GAAGTTCCTGATAACGCCACTCTAGCAGACGCCTTGAACACCATGACTATTCTTGGTATC 242
Query 244 AAACCGGTGGCAAACCGAGTTAGAGCTGTACCGGTGGCTGCCAAACCAGGCCAATGGCTG 303
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 243 AAACCGGTGGCAACCCGAGTTAGAGCTGTGCCGGTGGCTGCCAAACCAGACCAATGGCTG 302
Query 304 GGAGCCGG-GGGATCAATGATAGTAGAGTTGGACAAACAGAGCGGAAGTGCAAGAAAACA 362
|| ||||| ||| |||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 303 GGTGCCGGCGGG-TCAATGATAGTAGAGTCGGACAAACAGAGCGGGAGTGCAAGGAAACA 361
Query 363 GTACATAGGAATGGTGACCATGCTCGACGTTGTGGCTCACATCGCCGGCGATGACGGCGA 422
|||||||||| ||||||| ||||| |||||||||||||||||| |||| || ||||||||
Sbjct 362 GTACATAGGAGTGGTGACGATGCTGGACGTTGTGGCTCACATCACCGGAGACGACGGCGA 421
Query 423 GAGTGGGCTTGATAAGAAAATGGCTGCCCCTGTCTCTTCTATCATTGGTCATTGCCCTGA 482
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 422 GAGTGGGCTCGATAAGAAAATGGCTGCTCCTGTCTCTTCTATCATTGGTCATTGTCCTGA 481
Query 483 GGGTCTTAGCCTCTGGTCTCTCAATCCTAATACCAGCATCATGGATTGTATGGAGATGTT 542
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 482 GGGTCTCAGCCTCTGGTCTCTCAATCCTAATACCAGCATAATGGATTGTATGGAGATGTT 541
Query 543 GAGTAAAGGAATCCACAGGGTATTGGTTCCATTGGACAGTAATACAGAAAATATAACAGG 602
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 542 GAGTAAAGGAATCCACAGGGTATTGGTTCCATTGGACAGTAACATAGAAAATATAACAGG 601
Query 603 ACCTGAGTTGGTA-GAGT 619
||||||||||| | ||||
Sbjct 602 ACCTGAGTTGGCAAGAGT 619
Score = 553 bits (299), Expect = 1e-156
Identities = 386/427 (90%), Gaps = 9/427 (2%)
Strand=Plus/Plus
Query 839 AGGGAGAGGATCATAAACAGCTCGTCGACGGGAAAAATCGGAGAGTGGTGGGGACATTCT 898
||| ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 652 AGGAAGAGGATCATAAACAGCTCGTCGACGGGAAAAACCGGAGAGTGTTGTGGACATTCT 711
Query 899 CGGCTAGTGATCTGAAGGGATGTCATTTAGCCACATTGCGTTCGTGGTTGCCGCTAAATG 958
|||||||| ||||||||||||||||||||||||| ||| |||| |||||||| |||||||
Sbjct 712 CGGCTAGTAATCTGAAGGGATGTCATTTAGCCACGTTGTGTTCTTGGTTGCCACTAAATG 771
Query 959 CACTAGAGTTCGTCGAGAAAATCCCAAGAACTCTCTTGTTCACCGCTGCTACCTCAACAC 1018
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 772 CACTAGATTTCGTCGAGAAAATCCCAAGAACTCCCTTGTTCACCGCTGCCACCTCAACAC 831
Query 1019 CAGGGAGGGAGCTCGTGACGTGTCACGTGACATCAACCTTGGCCCAGGTGATCCATATGG 1078
|| |||||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||
Sbjct 832 CAAGGAGGGAGCTTGTGACGTGTCACGTGACAT-A-CCTTG-CCCAAGTGATCCATATGG 888
Query 1079 TCACCACGAAACGTGTACACAGAGTTTGGGTCGTGGACCAGAACGGTGGGCTACAAGGCC 1138
|||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 889 TCACCACGAAACGTATTCACAGAGTTTGGGTCGTGGACCAGAACGATAGGCTACAAGGCC 948
Query 1139 TTGTTTCTCTTACTGACATCATCGCTGTGGTCCGATCCGCTTTGCTTTCCGGAGCTCCGG 1198
| ||||||||||||||| ||||||||| ||||||||| ||||| ||| || |||||| ||
Sbjct 949 TAGTTTCTCTTACTGACGTCATCGCTGCGGTCCGATCAGCTTTACTTGCCAGAGCTCAGG 1008
Query 1199 ATCTGTTTTAACTCGCAACTTTCAGTCTTCTCTCCAATTACTCAAATTTTCTTT-TATTT 1257
|||||| | ||| | |||||||||||||||| ||||| ||||||||||||| | |||
Sbjct 1009 ATCTGT---ACCTCT-AGCTTTCAGTCTTCTCTCGAATTAATCAAATTTTCTTTGT-TTT 1063
Query 1258 GTTTCTT 1264
|||||||
Sbjct 1064 GTTTCTT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5