BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80100.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477247 jgi|Araly1|477247|fgenesh2_kg.2__2377__AT1G80100.1 950 0.0
> Ahg477247 jgi|Araly1|477247|fgenesh2_kg.2__2377__AT1G80100.1
Length=613
Score = 950 bits (514), Expect = 0.0
Identities = 588/621 (95%), Gaps = 15/621 (2%)
Strand=Plus/Plus
Query 25 AAAAACAAATATATAGAAAGAGGAAAGATTGAAGCGGAAAACGGGACAAGACGGGTGTGC 84
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AAAAA-AAA-ATATAGAAAGAGGAAAGATCGAAGCGGAAAACGGGACAAGACGGGTGTGC 58
Query 85 CGTTGTGGATGTTGGGGTTGGGTGTGGACCGGCTTCAAGCCGACATCAACCGGCTCCTAG 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CGTTGTGGATGTTGGGGTTGGGTGTGGACCGGCTTCAAGCCGACATCAACCGGCTCCTAG 118
Query 145 CCTCTCTTTTCCACCAGGGAGTGCTGGACGAGCAGTTCTTGCAGCTTCAGCAGCTTCAAG 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCTCTCTTTTCCACCAGGGAGTGCTGGACGAGCAGTTCTTGCAGCTTCAGCAGCTTCAAG 178
Query 205 ATGAGACTTCACCAAACTTTGTGTATGATGTCATTAATATCTACTTTGATGAATCCGAGA 264
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 179 ATGAGACTTCACCAAACTTTGTGTATGATGTCATTAATATCTACTTTGACGAATCCGAGA 238
Query 265 AGTTACTCCGCAACCTTAGATTATTGTTGATGGATAGAGAATTCTCGGACTATAAGAAAA 324
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 239 AGTTACTCCGGAACCTTAGATTATTGCTGATGGATAGAGAATTCTCGGACTACAAGAAAA 298
Query 325 TAGGATTACACCTGAATCAGCTGGTGGGAAGCAGTTCAAGCATTGGTGCTCGTAGGGTTC 384
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TAGGATTACACCTGAATCAGTTGGTGGGAAGCAGTTCCAGCATTGGTGCTCGTAGGGTTC 358
Query 385 GTAACGTCTGCGTTGCCTTT-CGTTCTGCTTCCGAGCTTAGCAACCGCCCAGGGTGCTTG 443
||||||| |||||||| ||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 359 GTAACGTATGCGTTGC-TTTGCGTTCTGCTTCTGAACTTAGCAACCGCCCAGGGTGCTTG 417
Query 444 AGAGGACTGGAGGTAGTAGAGCATGAGTATCATTACCTCAAGAACATGATGCATGAACTC 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGAGGACTGGAGGTAGTAGAGCATGAGTATCATTACCTCAAGAACATGATGCATGAACTC 477
Query 504 TTCCAGCTGGAGCAGCAGAGAATATTAGCTGCAGGAGTCAGATATCCAATGTAAAATTAG 563
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 478 TTCCAGCTGGAGCAGCAGAGGCTATTAGCTGCAGGAGTCAGATATCCAATGTAGAATAAT 537
Query 564 AATTTT-----GTCATAAAAATCAGAGAAAACCTAATTAGTGTGTGAT-GATAGTGTGTT 617
|||||| ||||||||||| |||||| | ||||||||||||||| | | |||||||
Sbjct 538 AATTTTAATTTGTCATAAAAAT--GAGAAAGC-TAATTAGTGTGTGATAG-T-GTGTGTT 592
Query 618 ATAAGCTACCGAAGCGAAACC 638
|||| |||||||||||||||
Sbjct 593 GTAAGGTACCGAAGCGAAACC 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5