BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80110.1 Length=1048 Score E Sequences producing significant alignments: (Bits) Value Ahg927499 jgi|Araly1|927499|scaffold_203060.1 1136 0.0 > Ahg927499 jgi|Araly1|927499|scaffold_203060.1 Length=817 Score = 1136 bits (615), Expect = 0.0 Identities = 748/811 (92%), Gaps = 14/811 (2%) Strand=Plus/Plus Query 67 CAATCAATCGGAGGAAGCAATGAATAATCTCCCAGAAGATTGCATCGCCAAGATCCTTTC 126 ||| ||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 3 CAA-CAATCGGAGCACGCAATGAATAATCTCCCAGAAGACTGCATCGCCATGATCCTTTC 61 Query 127 CTTGACAACTCCTCTCGACGTTTGCCGTTTATCGGCGGTCTCCAGTATCTTCAGATCCGC 186 |||||| || ||||||||||||||||| | ||||||||||||||| |||||||||||||| Sbjct 62 CTTGACTACGCCTCTCGACGTTTGCCGATCATCGGCGGTCTCCAGGATCTTCAGATCCGC 121 Query 187 CGCCGGCTCCGACGATGTCTGGAATCATTTCTTACCG--G-CTGATTTCCCCGCCGGCTT 243 ||||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||| Sbjct 122 CGCCGACTCCGACGATGTCTGGAACCATTTCTTACCGACGACTGATTTCCCCGCCGGCTT 181 Query 244 TGCGGCACCTGCTGGTCTTCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCC 303 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TGCGGCACCTGCTGGTCTCCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCC 241 Query 304 TCTTCTTATCAACGGCACTCTTTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTG 363 ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 242 TCTTCTTCTCAACGACACTGATTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTG 301 Query 364 CTACATGATGGCAGCGAGGGCCTTGAATATTGTTTGGGGACATGAGCAAAGATACTGGCA 423 |||||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||| Sbjct 302 CTACATGATGGCTGCGAGGGCCTTGAGTATTGTTTGGGGACATGATCCAAGATACTGGCA 361 Query 424 CTGGATCTCTCTCCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTG 483 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 CTGGATCTCTCTTCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTG 421 Query 484 GCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGC 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 GCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGC 481 Query 544 TTACTTCGTCTTTAAGTGGAACCATAGTCCTTACGGTTTTCGCCAGCCTGTAGAAACCTC 603 |||| ||||||| || ||||||| ||||| ||||||||||||||||||||||| |||| Sbjct 482 TTACCTCGTCTTCAAATGGAACCCCAGTCCATACGGTTTTCGCCAGCCTGTAGAGGCCTC 541 Query 604 CCTTGTCTT---GGCTGACACCGAGAGCACTGACAATGTTGTTCAGCCTTCCATGATTAG 660 |||||||| ||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 542 TCTTGTCTTCTTGGCTGACACCGAGAGTACTGA---TGATGTTCAGCCTTCCATGATTAG 598 Query 661 TCTCATGCAAGATTCAGGCGGCGAAGAAGGTCAGTCCCCTGTGCTGAGAAGAGACGGTTG 720 ||||||||||||| || |||| || |||| ||||||| ||| |||||||||||||||||| Sbjct 599 TCTCATGCAAGATCCAAGCGGTGATGAAGCTCAGTCCGCTGAGCTGAGAAGAGACGGTTG 658 Query 721 GTACGAGGTTGAATTGGGACAGTTCTTTAAAAGGAGAGGAGATTTGGGTGAAATAGAGAT 780 ||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||| Sbjct 659 GTACGAGGTGGAATTGGGGCAATTCTTTAAAAGGAGAGGAGATATGGGTGAAATAGAGAT 718 Query 781 GAGCCTCAAGGAGACAAAG-GGTCCTTATGAGAAGAAGGGCCTTATTGTTTATGGCATCG 839 ||||||||||||||||||| || |||| ||||||||| ||||||||| |||||||||||| Sbjct 719 GAGCCTCAAGGAGACAAAGAGG-CCTTTTGAGAAGAAAGGCCTTATTCTTTATGGCATCG 777 Query 840 AGATTAGACC-AGTGCCCTAATTGTATCCTA 869 ||||||| || | ||||| ||||||||||| Sbjct 778 AGATTAGGCCGAA-GCCCTGATTGTATCCTA 807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38999744091 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5