BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80110.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927499 jgi|Araly1|927499|scaffold_203060.1 1136 0.0
> Ahg927499 jgi|Araly1|927499|scaffold_203060.1
Length=817
Score = 1136 bits (615), Expect = 0.0
Identities = 748/811 (92%), Gaps = 14/811 (2%)
Strand=Plus/Plus
Query 67 CAATCAATCGGAGGAAGCAATGAATAATCTCCCAGAAGATTGCATCGCCAAGATCCTTTC 126
||| ||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 3 CAA-CAATCGGAGCACGCAATGAATAATCTCCCAGAAGACTGCATCGCCATGATCCTTTC 61
Query 127 CTTGACAACTCCTCTCGACGTTTGCCGTTTATCGGCGGTCTCCAGTATCTTCAGATCCGC 186
|||||| || ||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 62 CTTGACTACGCCTCTCGACGTTTGCCGATCATCGGCGGTCTCCAGGATCTTCAGATCCGC 121
Query 187 CGCCGGCTCCGACGATGTCTGGAATCATTTCTTACCG--G-CTGATTTCCCCGCCGGCTT 243
||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 122 CGCCGACTCCGACGATGTCTGGAACCATTTCTTACCGACGACTGATTTCCCCGCCGGCTT 181
Query 244 TGCGGCACCTGCTGGTCTTCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCC 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TGCGGCACCTGCTGGTCTCCCCACCAGGAAGCAACTCTTCTTCTCCCTCGTCGATAACCC 241
Query 304 TCTTCTTATCAACGGCACTCTTTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTG 363
||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 TCTTCTTCTCAACGACACTGATTTGAGCTTTTCGCTGGAGAGAAAGAGTGGCAACAAGTG 301
Query 364 CTACATGATGGCAGCGAGGGCCTTGAATATTGTTTGGGGACATGAGCAAAGATACTGGCA 423
|||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 302 CTACATGATGGCTGCGAGGGCCTTGAGTATTGTTTGGGGACATGATCCAAGATACTGGCA 361
Query 424 CTGGATCTCTCTCCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTG 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTGGATCTCTCTTCCTAACACCAGGTTCGGAGAAGTGGCTGAGCTCATCATGGTCTGGTG 421
Query 484 GCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GCTTGAGATCACTGGCAAGATCAACATTACCCTTCTCTCTGATGACACCCTCTACGCCGC 481
Query 544 TTACTTCGTCTTTAAGTGGAACCATAGTCCTTACGGTTTTCGCCAGCCTGTAGAAACCTC 603
|||| ||||||| || ||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 482 TTACCTCGTCTTCAAATGGAACCCCAGTCCATACGGTTTTCGCCAGCCTGTAGAGGCCTC 541
Query 604 CCTTGTCTT---GGCTGACACCGAGAGCACTGACAATGTTGTTCAGCCTTCCATGATTAG 660
|||||||| ||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 542 TCTTGTCTTCTTGGCTGACACCGAGAGTACTGA---TGATGTTCAGCCTTCCATGATTAG 598
Query 661 TCTCATGCAAGATTCAGGCGGCGAAGAAGGTCAGTCCCCTGTGCTGAGAAGAGACGGTTG 720
||||||||||||| || |||| || |||| ||||||| ||| ||||||||||||||||||
Sbjct 599 TCTCATGCAAGATCCAAGCGGTGATGAAGCTCAGTCCGCTGAGCTGAGAAGAGACGGTTG 658
Query 721 GTACGAGGTTGAATTGGGACAGTTCTTTAAAAGGAGAGGAGATTTGGGTGAAATAGAGAT 780
||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 659 GTACGAGGTGGAATTGGGGCAATTCTTTAAAAGGAGAGGAGATATGGGTGAAATAGAGAT 718
Query 781 GAGCCTCAAGGAGACAAAG-GGTCCTTATGAGAAGAAGGGCCTTATTGTTTATGGCATCG 839
||||||||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||
Sbjct 719 GAGCCTCAAGGAGACAAAGAGG-CCTTTTGAGAAGAAAGGCCTTATTCTTTATGGCATCG 777
Query 840 AGATTAGACC-AGTGCCCTAATTGTATCCTA 869
||||||| || | ||||| |||||||||||
Sbjct 778 AGATTAGGCCGAA-GCCCTGATTGTATCCTA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5