BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80120.1

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927497 jgi|Araly1|927497|scaffold_203058.1                       1118    0.0  


> Ahg927497 jgi|Araly1|927497|scaffold_203058.1
Length=674

 Score = 1118 bits (605),  Expect = 0.0
 Identities = 640/657 (97%), Gaps = 1/657 (0%)
 Strand=Plus/Plus

Query  92   TCGAACATGAAGGGGGGTTTGCTTGTGGACGATGAATTTATACACGGAGAAGAAAGGAGC  151
            |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct  15   TCGATCATGAAGGGGGGTTTGCTTGTGGACGATGAATTTATTCACGAAGAAGAAAGGAGC  74

Query  152  CTGACTGTTCGGAAAACATCTCTGTTTTTCGCCGGCGATGGTTTCACAGTTTACGACTGC  211
            ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  75   CTGACTGTTCGGAAAACTTCTCTGTTTTTCGCCGGCGATGGTTTCACGGTTTACGACTGC  134

Query  212  AAGGGAAGTTTGGTGTTTCGGGTTGACTCTTACGGTGGTCCCAACACCCGCGACACCGAC  271
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  135  AAGGGAAGTTTGGTCTTTCGGGTGGACTCTTACGGTGGTCCCAACACCCGCGACACCGAC  194

Query  272  GAGGTTGTCCTCATGGACGCTCACGGCCGTTGTCTCCTCACCCTCCGACGAAAGAGGCCG  331
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  195  GAGGTTGTCCTCATGGACGCTAACGGCCGTTGTCTCCTCACCCTCCGACGAAAGAGGCCG  254

Query  332  AGTTTGCGACGGAGATGGGAGGGGTATCTCGGGGAGAGATCGGACGGCCAGAAACCGATC  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  255  AGTTTGCGACGGAGATGGGAGGGGTATCTCGGGGAGAGATCGGACGGCCAGAAACCGATA  314

Query  392  TTCGGGGTAAGGAGATCTTCGATAATCGGGAGGAACAGTGTGACGGTGGAGGTGTACGGG  451
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  315  TTCGGGGTCAGGAGATCGTCGATAATCGGGAGGAACAGTGTGACGGTGGAGGTGTACGGG  374

Query  452  GACTACCAGTGCAGCGAGTACCTGATAGAAGGTAGTTTCGGGGCAAGGAACTGCACGGTG  511
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  375  GACTACCAGTGCAGCGAGTACCTGATAGAAGGTAGTTTCGGGGCAAGGAGCTGCACGGTG  434

Query  512  GTGGAGGCGGAGACGAGGCGGAAGGTGGCGGAGATAAGGCGCAAAGTGGATGCGTCAACG  571
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  435  GTGGAGGCGGAGACGAGGCGGAAAGTGGCGGAGATAAGGCGCAAAGTGGATGCGTCAACG  494

Query  572  AACGTGATGCTTGGGAAAGACGTTTTCTCGTTGAACGTGAAGCCCGGTTTTGATGGAGCC  631
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  495  AACGTGATGCTTGGGAAAGACGTTTTCTCGTTGAACGTGAAGCCCGGTTTCGATGGAGCC  554

Query  632  TTTGCAATGGGATTGGTTCTTGTGCTTGATCAAATCTACGGCGACGATCTCCTTGAGGTT  691
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555  TTTGCCATGGGATTGGTTCTTGTGCTTGATCAAATCTACGGCGACGATCTCCTTGAGGTT  614

Query  692  GGTGAGGAACAGGTGCACCCTTCCGCAGAAGATCTCTGATTTGAtttttcacccttt  748
            |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  615  GGTGAGGAACAGGTGCACCCTTCCGCAGAAGATCTCTGATTTGATTTTTCTCC-TTT  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35187452391


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5