BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80133.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477243 jgi|Araly1|477243|fgenesh2_kg.2__2373__AT1G80133.1         658    0.0  


> Ahg477243 jgi|Araly1|477243|fgenesh2_kg.2__2373__AT1G80133.1
Length=549

 Score =  658 bits (356),  Expect = 0.0
 Identities = 497/559 (89%), Gaps = 34/559 (6%)
 Strand=Plus/Plus

Query  1    ATGGATTCGTCAAGAAAATATAAACGATGTGGTTTTGGAGCTGCACTGTTCGTTGCT-AA  59
            |||||||| |||||||| |||||||||||| |||||||||||||||||||||||| | ||
Sbjct  1    ATGGATTCATCAAGAAATTATAAACGATGTAGTTTTGGAGCTGCACTGTTCGTTG-TCAA  59

Query  60   CAtcttcttctctctgc-tctctctACACTGC---ATATCTGGGGCACATGGTCATCAAC  115
            ||||||||||||||| | | |||||||||| |   |||||||||||||||||||||||||
Sbjct  60   CATCTTCTTCTCTCT-CATATCTCTACACTACAATATATCTGGGGCACATGGTCATCAAC  118

Query  116  AAAGAATGAAAGAATCGGTTATGGGTTCAGAGCCTCCCGTGTGTGCGACAAAATGCCGGA  175
            ||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||| ||
Sbjct  119  AAAGAATGAAACAATCGGTTTTTGGTTCAGAGCCTCCCGTGTGTGCGACAAAGTGCCTGA  178

Query  176  ACTGCAAGCCTTGCCTTCCTTATCTATTTGACATTCGTGGTGCTCatgatgatgatgatg  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  ACTGCAAGCCTTGCCTTCCTTATCTATTTGACATTCGTGGTGCTCATGATGATGATGATG  238

Query  236  atAGTGAACCATACTATCCGGTAAAGTGGATATGTAGATGTAGAGATAGAGTATTTGAAC  295
            |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct  239  ATAGTGAACCATACTATCCGGTTAAGTGGATTTGTAGATGTAGAGACAGAGTATTTGAAC  298

Query  296  CTTAAGAATAGTATCTATATATACATTATTTATCTAGTGTCTTGCT--T----CTCATGG  349
            |||||||| |||||  |||||  |||||||||| |||||| |||||  |    |||||||
Sbjct  299  CTTAAGAACAGTAT--ATATA--CATTATTTATATAGTGTTTTGCTAATGATTCTCATGG  354

Query  350  ATGTTCATGATCTGACCCATGAATGATGGCATCATGATGGTGGTTCATTGGATATTGTCG  409
            | |||||||||  | |||||||||||||| ||||||||| |||||||||| | |||||||
Sbjct  355  ACGTTCATGAT--G-CCCATGAATGATGGTATCATGATGATGGTTCATTGAAAATTGTCG  411

Query  410  GGAATTATACAATCTTTCGATATGTAATCAGGTAAACATTTACTCGTGGCTTGGCATGTG  469
            ||| ||||||||||||| ||||| ||||||||||||||| ||||||| |||| |||||||
Sbjct  412  GGA-TTATACAATCTTTTGATATATAATCAGGTAAACATCTACTCGTTGCTTCGCATGTG  470

Query  470  TTCAT--T-GATAGTCATGGTGTATTGGT--GT----GTATTAAGAAAGGaaaaaaa---  517
            |||||  | |||||| |||||||||||||  ||    ||||||||||| ||||||||   
Sbjct  471  TTCATAATTGATAGTGATGGTGTATTGGTTTGTAATTGTATTAAGAAAAGAAAAAAAAAA  530

Query  518  -GTTGATGATGTGTTTGTC  535
             ||||||||||||||||||
Sbjct  531  AGTTGATGATGTGTTTGTC  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5