BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80140.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316947 jgi|Araly1|316947|fgenesh1_pm.C_scaffold_2001980 1541 0.0
> Ahg316947 jgi|Araly1|316947|fgenesh1_pm.C_scaffold_2001980
Length=1125
Score = 1541 bits (834), Expect = 0.0
Identities = 973/1036 (94%), Gaps = 26/1036 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGTAAACGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 ATGGGAAGTGTAAATGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACG 150
Query 61 GGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 GGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGT 210
Query 121 GATCCACAGAAGTGGGGAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAA 180
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GATCCAAAGAAGTGGGAAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAA 270
Query 181 GTAGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGCAAATCATGGTGG 240
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 271 GTGGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGAAAATCATGGTGG 330
Query 241 GATATTCATTGTAGAGACCAT-----------C--C--C--G---G-ACC--C-ATGATG 276
||||||||||||||||||||| | | | | | ||| | ||||||
Sbjct 331 GATATTCATTGTAGAGACCATGCCGGACCCAACTGCATCTGGCTTGCACCAACGATGATG 390
Query 277 ACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTTAGAAATAGTGCACAA 336
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 391 ACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTCAGAAATAGTGCACAA 450
Query 337 ACACATGTTCTTGTGATGGGAAGCCAAAATGTGTATATCGATGATATCAAAATAACATCA 396
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 451 ACACATGTTCTTGTGATGGGAAGCCATAATGTGTATATAAATGATATCAAAATAACCTCA 510
Query 397 CCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGCCGTTTCTATC 456
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 511 CCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGTCGTTTCTATC 570
Query 457 AATCATTCTGACATCGCCACTGGTGATGATTGTGTGTCGATCGGAGATCAAGTGAATAAT 516
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 571 AATCACTCTGACATCGCCACTGGTGATGATTGTGTGTCTATCGGAGATCAAGTGAATAAT 630
Query 517 TTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGTGAGCATTGGGAGTTTAGGT 576
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 631 TTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGACAGCATTGGGAGTTTAGGC 690
Query 577 AGAGGAGGAACAGAGGTAACAGTGGAAAACATACGTGTGTCGCACGTTAACTTCACTGGA 636
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 691 AGAGGAGGAACAGAGGTAGCAGTGGAAAACATACGTGTGTAGCACGTTAACTTCACGGGA 750
Query 637 ACAACAAACGGAGCTCGAATCAAGACTTGGCCTGGAGGAACTGGTTACGTCCGAGGAATC 696
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 751 ACAACAAACGGAGCTCGAATCAAGACGTGGCCTGGAGGAACTGGTTATGTCCGAGGAATC 810
Query 697 GAGTTCTTCGATATCCGTTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTAC 756
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GAGTTCTTCGACATCCATTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTAC 870
Query 757 GGTTGTGCCCCTACATGCGTTGAGACTATG-AAGGGAGTTCACATAGAGAAAGTGAGATA 815
||||||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 871 GGTTGTGCCCCTAAATGCGTTGAGACTA-GAAAGGGAGTCCACATAGAGAAAGTGAGATA 929
Query 816 CATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAACTCGAGTGTTCAGGGGA 875
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 930 CATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAGCTCGAGTGTTCAGGGGA 989
Query 876 GAGTGTTCCATGTTCCAACCTTTTCATGAGAGACATTGACTTATCTCCGGCCGATGGTAT 935
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 990 GAGTGTCCCATGTTCCAACCTTTTGATGAGAGACATTGACTTATCTCCAGCCGATGGCAT 1049
Query 936 TGATTCTGTCTCCTCTCTCTGCTCTTTTGCTCACGGCTCCGCACAAGGCATCATTCGACC 995
|| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct 1050 TGGTTCTGTCTCCTCTCTCTGCTCTTTTGTTCACGGCTCCGCACAAGGCCTCATCCGACC 1109
Query 996 TTTATCCTGTTTCTAA 1011
|| |||||| |||||
Sbjct 1110 TTCCTCCTGTCTCTAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5