BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80150.1
Length=2035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927493 jgi|Araly1|927493|scaffold_203054.1 1999 0.0
> Ahg927493 jgi|Araly1|927493|scaffold_203054.1
Length=1234
Score = 1999 bits (1082), Expect = 0.0
Identities = 1183/1232 (96%), Gaps = 5/1232 (0%)
Strand=Plus/Plus
Query 331 CTCGAGGGAGGCCCTGGATCATGCTATCTCTGCGACACATTCGCAGATTCTGCCATTTTC 390
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCGAGGGAGGCCCTGGATCATGCTATCTCTGCGACACATTCGCAGATTCTGCCATTTTT 60
Query 391 CTTCCTCTGCAGCCACTGGTATTGCATATGTTTCAACAGAGTCCAATCAGATCCAGGGTT 450
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 61 CTTCCTCTGCAGCCACTGGTATTGCATATGTTTCAACTGACTCCAATCAGATCCAGGCTT 120
Query 451 TGAAACCGCTCGAGGAACCTGCCCTTGTGAAGCTTAAATCTGAGCGAGA-CCCTGAGAAG 509
|||||||||| ||||| ||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 121 TGAAACCGCTTGAGGAGCCTGCCCTTGTCAAGCTTAAATCTGAGCGAGATCCC-GAGAAG 179
Query 510 CTATACAATCTCTTTAAAGCTAATGCCACTAACCGTTTGGTGATTGAAAATCGATTTGCT 569
|||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CTATTCAAGCTCTTTAAAGCTAATGCCACTAACCGTTTGGTGATTGAGAATCGATTTGCT 239
Query 570 TTTGAAGATACGGTCTCTAGATTAGCTGGGGCAGGTCGGCTTGATTTCATTGAGGATCTG 629
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TTTGAAGACACGGTTTCTAGATTAGCTGGGGCAGGTCGGCTTGATTTCATTCAGGATCTG 299
Query 630 CTTGAGCATCAGAAGACACTTCCACAAGGTAGGCGTGAGGGTTTCATTGTTAGGATTATA 689
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 300 CTTGAGCATCAGAAGACACTTCCACAAGGTAGGCGCGAAGGTTTCATTGTTAGGATCATA 359
Query 690 ATGTTGTATGGCAAGGCTGGAATGACGAAGCAAGCACTTGATACTTTCTTCAATATGGAT 749
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 360 ATGTTGTATGGCAAGGCTGGGATGACGAAGCAAGCACTTGATACTTTCTACAATATGGAT 419
Query 750 TTATACGGTTGCAAAAGATCTGTTAAGTCCTTCAATGCCGCTCTTCAAGTCTTATCTTTC 809
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTATACGGTTGCAAAAGAACTGTTAAGTCCTTCAATGCCGCTCTTCAAGTCTTATCTTTC 479
Query 810 AATCCTGATCTCCACACCATCTGGGAGTTCCTTCACGACGCCCCATCGAAGTATGGCATT 869
|| |||||||||||||||||| ||||||||||||| ||||| ||| | || ||| |||||
Sbjct 480 AAACCTGATCTCCACACCATCCGGGAGTTCCTTCATGACGCTCCAGCAAACTATCGCATT 539
Query 870 GATATTGATGCGGTTTCTTTTAACATTGCCATTAAATCTTTCTGTGAGCTGGGTATTCTT 929
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATATTGATGCAGTTTCTTTTAACATTGCCATTAAATCTTTCTGTGAGCTGGGTATTCTT 599
Query 930 GACGGGGCCTATATGGCAATGAGGGAGATGGAGAAATCAGGGTTAACACCAGATGTAGTT 989
|||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 600 GACGGGGCGTATATGGCAATGAGGGAGATGGAGAAATCTGGGTTAAAACCAGATGTAGTT 659
Query 990 ACATATACTACACTTATATCGGCGTTATACAAGCACGAGAGGTGTGTGATTGGAAATGGA 1049
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 ACATATACTACGCTTATATCGGCGTTTTACAAGCACGAGAGGTGTGTGATTGGAAATGGA 719
Query 1050 TTGTGGAACCTTATGGTCCTCAAGGGCTGTAAGCCGAACCTCACCACTTTTAATGTTAGG 1109
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 720 TTGTGGAACCTTATGGTCCTCAAGGGCTGTAGGCCTAATCTCACCACTTTTAATGTTAGG 779
Query 1110 ATTCAGTTTTTAGTGAATAGGAGACGAGCTTGGGATGCAAATGATCTGTTGCTGTTGATG 1169
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTCAGTTTTTAGTCAATAGGAGACGAGCTTGGGATGCAAATGATCTGTTGCTGTTGATG 839
Query 1170 CCTAAACTCCAGGTGGAACCGGACAGCATAACATATAACATGGTTATCAAAGGGTTTTTC 1229
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCAAAACTCCAGGTGGAACCGGACAGCATAACATATAACATGGTTATCAAAGGGTTTTTC 899
Query 1230 CTTGCGAGGTTCCCTGACATGGCGGAAAGAGTTTATACAGCGATGCATGGTAAGGGGTAC 1289
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 CTTGCGAGGTTCCCTCACATGGCGGAAAGGGTTTATACAGCGATGCATGGTAAGGGGTAC 959
Query 1290 AAACCCAATTTGAAGATATACCAGACGATGATTCACTATTTGTGCAAGGCAGGAAATTTT 1349
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAACCCAATGTGAAGATATACCAGACGATGATTCACTATTTGTGCAAGGCAGGAAATTTT 1019
Query 1350 GATTTGGCTTATACAATGTGCAAGGATTGTATGAGAAAGAAGTGGTACCCAAACTTGGAC 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GATTTGGCTTATACAATGTGCAAGGATTGTATGAGAAAGAAGTGGTACCCAAACTTGGAC 1079
Query 1410 ACAGTTGAGATGTTGCTCAAAGGGCTTGTGAAAAAGGGGCAGCTTGATCAGGCTAAGTCG 1469
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1080 ACAGTTGAGATGTTGCTCAAAGGGCTTGTGAAAAAGGGCCAGCTTGATCAGGCTAAGTCG 1139
Query 1470 ATCATGGAGTTAGTTCACAGAA-GAGTACCTCCTTTCAGGTCAAAACAGTTGCTCTCCCT 1528
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATCATGGGGTTAGTTCACA-AACGAGTACCTCCTTTCAGGTCAAAACAGTTGCTCTCCCT 1198
Query 1529 TAAGTCCATTTTGTAATGTTTACATGA-AATG 1559
|||||||||||||||||||||||| || ||||
Sbjct 1199 TAAGTCCATTTTGTAATGTTTACACGACAATG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76523302205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5