BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80160.1

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316945 jgi|Araly1|316945|fgenesh1_pm.C_scaffold_2001978           760    0.0  


> Ahg316945 jgi|Araly1|316945|fgenesh1_pm.C_scaffold_2001978
Length=492

 Score =  760 bits (411),  Expect = 0.0
 Identities = 459/482 (95%), Gaps = 3/482 (1%)
 Strand=Plus/Plus

Query  99   ATGAAGGACGA-A--ACGGGAAACCCTCTGCATATCAAGTCTTTGAATCACATCTCTCTT  155
            |||||||| || |  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGGAAGATACTACCGGAAACCCTCTGCATATCAAGTCTTTGAATCACATCTCTCTT  60

Query  156  CTCTGTCGATCCGTCGAGGAATCCATTAGCTTTTACCAAAACGTTTTAGGGTTCCTCCCT  215
            ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  61   CTCTGCCGATCCGTTGAGGAATCCATTAGCTTTTACCACAACGTTTTAGGGTTCCTCCCT  120

Query  216  ATTCGCAGACCTGACTCTTTTGATTTCGATGGCGCGTGGTTGTTTGGACATGGAATTGGG  275
            ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  ATTCGCAGACCTGGCTCTTTTGATTTCGATGGCGCTTGGTTGTTTGGACATGGAATTGGG  180

Query  276  ATTCATCTTCTTCAATCTCCTGAACCTGAGAAATTACTCAAGAAAACAGAGATTAATCCC  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTCATCTTCTTCAATCTCCTGAACCTGAGAAATTACTCAAGAAAACAGAGATTAATCCC  240

Query  336  AAGGATAATCACATTTCTTTCCAGTGCGAAAGCATGGAAGCAGTGGAGAAGAAGCTCAAG  395
            ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  241  AAGGACAATCACATTTCTTTCCAGTGCGAAAGCATGGAAGCGGTGGAGAAGAAGCTCAAG  300

Query  396  GAGATGGAGATAGAGTATGTGAGAGCAGTGGTTGAAGAAGGTGGCATCCAAGTGGACCAA  455
            ||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  301  GAGTTGGAGATAAAGTATGTGAGAGCAGTGGTGGAAGAAGGAGGCATCCAAGTGGACCAA  360

Query  456  CTCTTCTTCCACGACCCTGATGCCTTCATGATCGAGATATGCAACTGCGATAGCCTCCCC  515
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  361  CTCTTCTTCCACGACCCTGATGCCTTCATGATTGAGATCTGCAACTGCGATAGCCTCCCC  420

Query  516  GTTATCCCTCTCGCTGGAGAAATGGCTCGTTCATGCTCTCGACTTAATATCCGCCAGCTC  575
            ||| ||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||
Sbjct  421  GTTGTCCCTCTCGCTGGCGAGATGGCTCGTTCCTGCTCTCGACTCAATATCCGCCAGCTC  480

Query  576  GT  577
            ||
Sbjct  481  GT  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31908881529


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5