BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80170.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477239 jgi|Araly1|477239|fgenesh2_kg.2__2369__AT1G80170.1 2266 0.0
> Ahg477239 jgi|Araly1|477239|fgenesh2_kg.2__2369__AT1G80170.1
Length=1479
Score = 2266 bits (1227), Expect = 0.0
Identities = 1402/1486 (94%), Gaps = 14/1486 (1%)
Strand=Plus/Plus
Query 23 TCTAAATTATGAGTTATTCACGCGGCGGTAC---TCTTGTCACTCTTTTGTTACTACTAG 79
|||||||||||||||||||| |||| ||| | ||||||| |||||| | ||||||
Sbjct 1 TCTAAATTATGAGTTATTCATGCGGTACTACTGTTGTTGTCACCCTTTTG-T--TACTAG 57
Query 80 TCGTAGCCTCCTCACTCGCTTTGACCGCAAACGCGAATTCGTTCGAATCGCTCCTCCAGC 139
| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 58 TGGTGGCCTCCTCACTCGCTCTGACCGCAAACGCGGATTCGTTCGAATCGCTCCTCCAGC 117
Query 140 TCCCGCGGAGACAGTCGCGCTCGACCCGACCCAGATCCGAACGGCTCCTCCACGTTGGCA 199
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 118 TCCCGCGAAGACAGTCGCGCTCGACCCGACCCAGATCCGAAAGGCTCCTCCACGTCGGCA 177
Query 200 ATTTTGGTGCCAAAGGCAATGGCGTCACCGACGACACTAAAGCGTTTGCAGATGCTTGGA 259
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 AATTTGGTGCCAAAGGCAATGGCTTCACCGACGACACTAAAGCGTTTGCAGATGCTTGGA 237
Query 260 AGACAGCTTGTTCTTCCAAAGTCAAAACCAGAATCTTGGTGCCTGAAAATTACACTTGTC 319
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 238 AGACAGCTTGTTCTTCCAAAGTCAAAACCAGAATCTTGGTGCCTGAAAACTACACCTGTC 297
Query 320 TCCTTCGGCCTATTGATCTTTCTGGACCTTGTAAAGCAAGACTCACACTCCAGATCTCTG 379
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCCTCCGGCCCATTGATCTTTCTGGACCTTGTAAAGCAAGACTCACACTCCAGATCTCTG 357
Query 380 GTACAATCATTGCTCCCAATGATCCAGATGTTTGGGAAGGTCTTAACCGCCGAAAATGGC 439
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 358 GTACAATCATTGCTCCCAATGATCCAGATGCTTGGGAAGGTCTAAACCGCCGCAAATGGC 417
Query 440 TATATTTCCATGGTTTGAGCCGCTTAACTGTTGAAGGAGGCGGCACTGTTAACGGGATGG 499
| ||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct 418 TGTATTTCCATGGTTTGAGCCGCTTGACGGTTGAAGGAGGTGGCACTGTTAATGGAATGG 477
Query 500 GGCAAGAATGGTGGGA-AAGATCTTGCAAACACAATCATTCCAACCCTTGTCGAGGTGCT 558
| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GCCAAGAATGGT-GGACAAGATCTTGCAAACACAATCATTCCAACCCTTGTCGAGGCGCT 536
Query 559 CCAACGGCCTTAACATTCCACAAGTGCAAGAATATGAGAGTTGAGAACCTCAATGTGATT 618
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 537 CCAACGGCCATAACATTCCACAAGTGCAAGAATATGAGAGTTGAAAACCTCAATGTGATT 596
Query 619 GATAGTCAACAAATGCACATTGCCTTAACCAGCTGTCGCCGTGTGACCATCTCTGGTTTA 678
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 597 GATAGCCAACAAATGCACATTGCCTTCACCAGCTGTCGCCGTGTGGCCATCTCTGGTTTA 656
Query 679 AAGGTCATAGCTCCTGCTACTAGTCCCAATACTGATGGAATTCACATAAGCGTCTCTCGT 738
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 AAGGTCATTGCTCCTGCTACTAGTCCCAATACTGATGGAATTCACATAAGCGTCTCCCGT 716
Query 739 GGTATCGTTATAGACAACACTACTGTCAGCACAGGAGATGACTGCATTTCGATAGTTAAA 798
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 717 GGTATCGTGATAGACAACACTACTGTCAGCACAGGAGATGACTGTGTTTCGATAGTTAAA 776
Query 799 AACTCTACACAGATCTCCATCAGCAACATTATATGTGGTCCTGGCCATGGCATAAGCATT 858
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AACTCTTCACAGATCTCCATCAGCAACATTATATGTGGTCCTGGCCATGGCATAAGCATT 836
Query 859 GGAAGCCTAGGAAAATCAAAATCTTGGGAAGAAGTTAGAGACATAACAGTTGATACGGCC 918
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 837 GGAAGCCTAGGAAAATCAGAATCTTGGGAAGAAGTTAGAGACATAACGGTTGATACAGCC 896
Query 919 ATCATCTCTGACACTGCGAATGGTGTTCGGATCAAAACATGGCAGGGAGGGAGTGGTTTG 978
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTCATCTCTGACACTGCGAATGGTGTTCGGATCAAAACATGGCAGGGAGGGAGTGGTTTG 956
Query 979 GTCTCAAAAATTATCTTTAGGAACATCAAGATGAACAATGTGTCAAACCCCATCATCATC 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GTCTCAAAAATTATCTTTAGGAACATCAAGATGAACAATGTGTCAAACCCCATCATCATC 1016
Query 1039 GATCAGTATTACTGCGATTCTAGGAAGCCGTGTGCGAATCAGACATCAGCTATTAGCATT 1098
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 GATCAGTATTACTGCGATTCTCGGAAGCCGTGTGCGAATCAGACATCAGCTCTTAGCATT 1076
Query 1099 GAGAACATCTCATTTGTTCACGTGAGGGGCACCTCAGCATCAAAGGAAGCAATCAAGATC 1158
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 1077 GAGAACATCTCATTTGTTCACGTGAGGGGCACTTCAGCAACAAAACAAGCAATCAAGATC 1136
Query 1159 TCTTGCAGCGATAGTTCACCATGTCGCAACATACTTCTACAAGACATTGATCTTGAACCA 1218
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 TCTTGCAGCGATAGTTCACCATGTCGCAACATACTTCTACAAGACGTTGATCTTGAACCA 1196
Query 1219 TCAAACGGTGATGGTTTCACAGAGTCTTTCTGTTGGGAAGCTTATGGTTCTAGTTCGGGT 1278
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCAAGCGGCGATGGTTTCACAGAATCTTTCTGTTGGGAAGCTTATGGTTCTAGTTCGGGT 1256
Query 1279 CAAGTGTACCCTCCTCCTTGTCTTTCAGATGACACAAGCTTCTTAGAACAGTCGGTTCAG 1338
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1257 CAAGTGTACCCTCCTCCTTGCCTTTCAGATGACACAAGCTTCTTGGAACAGTCGGTTCAG 1316
Query 1339 TCCGGGATCACATCTGCATACCTTTGAATTCATGTTTTCAGATTGAAAATCTTGCCACGT 1398
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 1317 TCCGGGATCACATCTGCATACCTTTGAATTCATGGTTTCAGATTGCAAATCT-GCCACGT 1375
Query 1399 TTTT-GTGCACACGCCAAATGCTTTTATGATATA-G-TCATGTTTTGGCAAATTCAGTTC 1455
|||| ||||||| |||||||| ||||| ||||| | ||| ||||||||||||||| ||
Sbjct 1376 TTTTAGTGCACAAGCCAAATG-TTTTAA-ATATATGGTCACATTTTGGCAAATTCAGCTC 1433
Query 1456 ACCAGTCCATCCCTTATCATTGAGTTTCTCTCTTATTGCACTCAAT 1501
|| | || ||||||||||| |||||| ||||||||||||||||||
Sbjct 1434 ACTAATCTTTCCCTTATCATCGAGTTTATCTCTTATTGCACTCAAT 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5