BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80190.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316941 jgi|Araly1|316941|fgenesh1_pm.C_scaffold_2001974 961 0.0
> Ahg316941 jgi|Araly1|316941|fgenesh1_pm.C_scaffold_2001974
Length=609
Score = 961 bits (520), Expect = 0.0
Identities = 580/609 (95%), Gaps = 3/609 (0%)
Strand=Plus/Plus
Query 293 ATGTACGGGAGAAAAGGGTATCAGCTTATCAAAGATTTTGCCACCGGAGAGAAGGGTCAG 352
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTACGGGAGAAAAGGTTATCAGCTTGTCAAAGATTTTGCCACCGGAGAGAAGGGTCAG 60
Query 353 CTCAAACCTTTCAACAGCAAACTCTTTGATGAAACAATCGAAGAGTGTGACCAGAATCAC 412
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 61 CTCAAACCTTTTAACAGAAAACTCTTTGACGAGACAATCGAAGAGTGTGACCAGAATCAC 120
Query 413 CATCTTATCCAGTCCTTGATAA---GGAAAATGCAACAAGAAGGTTTGGATGTTCAGAAC 469
|||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||
Sbjct 121 CATCTTATCCAGTCCTTGATAAGGTGGAAGATGCAGCAACAAGGTTTGGATGTTCAGAAC 180
Query 470 AACAGAAACGCTGACCACTATGGAGCACTAATTCACCACCTTGCTTTGATCCGGAACAAG 529
||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 181 AACAGAAACGCAGACCACTATGGAGCACTAATCCACCACCTTTCTTTGATCCGGAACAAG 240
Query 530 CGCTGCCTCATGGCTTATGTGTACAACCGAGCAGAAATTGTGCGTGATTTGGCATGGAGA 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 241 CGCTGCCTCATGGCTTATGTGTTCAACCGAGCAGAAATTGTGCGTGATTTGGCGTGGAGA 300
Query 590 GTAGGGCTTGAACTTCTCGACCTTCCCTCTGAAATCCAAGAGAAGCTCACTACACTAGAG 649
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GTAGGACTTGAACTTCTCGACCTTCCCTCCGAAATCCAAGAGAAGCTCACTACACTAGAG 360
Query 650 AAGGAATACTTCAAAAACCATTCGGTTGCTCTAAAATCATACATGGGAAAAGTAGGAATC 709
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AAGGAGTACTTCAAGAACCATTCGGTAGCTCTAAAATCATACATGGGAAAAGTAGGAATC 420
Query 710 GAGTTGAATGTCGATATGGTCCCTCCTAAAGATCCTTATATCAAGGTCAGAATTTTGGAT 769
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTTGAATGTCGATATGGTGCCTCCTAAAGATCCTTATATCAAGGTCAGAATTTTGGAT 480
Query 770 GATATTGATGAAGGAATCGTGCTGAGTGACAAAACAACAAATTTTGCCCGTCATTCTATG 829
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 481 GATATTGATGAAGGAATCGTCCTGAGTGACAAAGCAACAAATTTTGCCCGTCATTCTATG 540
Query 830 CATTTCCTCAAACGTACTGATGCGGAACCATACATTGCTCGGGGCCAAATGGAGGAGCTG 889
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 CACTTCCTCAAACGAACTGATGCGGAACCGTACATTGCTCGGGGCCAAATGGAGGAGCTG 600
Query 890 ACAGGATGA 898
||||| |||
Sbjct 601 ACAGGTTGA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5