BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80210.1
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477234 jgi|Araly1|477234|fgenesh2_kg.2__2364__AT1G80210.2 1773 0.0
Ahg478001 jgi|Araly1|478001|fgenesh2_kg.3__702__AT3G06820.2 983 0.0
> Ahg477234 jgi|Araly1|477234|fgenesh2_kg.2__2364__AT1G80210.2
Length=1831
Score = 1773 bits (960), Expect = 0.0
Identities = 1068/1120 (95%), Gaps = 8/1120 (1%)
Strand=Plus/Plus
Query 110 ATCTCTTCCGAAGAAGT--T-ATGTCTCTTACATGCGTTAATATGTCCGAGGATGTCTGG 166
||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 30 ATCTCTTCCGAAGAAGTAATAATGTCTCTGACATGCGTTAATATGTCCGAGGATGTCTGG 89
Query 167 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTC 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTC 149
Query 227 GGCGACATCGAGT-ACTCAAAGGACGGGGGAAGTGCCACAGCTATGATCTGGGGAGCATC 285
|||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 150 GGCGACATCGAGGCACTCAAAGAACGGCG-AAGTGCCACAGCTATGATCTGGGGAGCATC 208
Query 286 GCCTCAGTCACGGTCTGATCGGCAGAAGGATAGAGTTGAAACCAATCCTGAACAACTGGC 345
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 209 GCCTCAGTCACGGTCTGATCGGCAGAAGGATCGAGTTGAAACCAATCCTGAACAATTGGC 268
Query 346 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTCAT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 269 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTGAT 328
Query 406 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTCGATGTTCGAAC 465
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 329 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTTGATGTTCGGAC 388
Query 466 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATCTTTTCCTGTTTTAG 525
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 389 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATAGTCTCCTGTTTTAG 448
Query 526 TGAAGATGCTAACAAGGTTGGCAGAATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAA 585
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 449 TGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATTGCTTTCCAGTCTTCTGATGGAAA 508
Query 586 GCCGAATAGTATTCCTAAATCAATGAGCCTGGTTCTTGCAAATAAAGATTCTGTTATCGA 645
||||||||||||||||||| || | |||||||| |||||||||||||| ||||| |||||
Sbjct 509 GCCGAATAGTATTCCTAAACCAGTCAGCCTGGTACTTGCAAATAAAGACTCTGTCATCGA 568
Query 646 TTTAGAATCTTCATTTAGTTCTTCGGACTCGATATACCAGAGATCGTCTTCTGCTCGGGG 705
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 569 TTTAGAATCGTCATTTAGTTCTTCGGACTCGATATACCAGAGATCCTCTTCTGCTCGGGG 628
Query 706 AGACAATCCTGAGCTCGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGG 765
||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 AGACACTCCCGAGCTAGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGG 688
Query 766 ACGCGTTTCAGATTTTGAGGCTTTCTTTGTGAACAATACTGAGGCCAACAACACCAGAAG 825
||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| || |
Sbjct 689 ACGGGTTTCAGATTTTGGGGCTTTCTTTGTCAACAATACTGAGGCCAACAGCACCGGAGG 748
Query 826 AGATGGAACAAGTGGAAACTACAGCAGCACAGCAATAGAAATTGACTCGATGGACATGTC 885
|||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 749 AGATGGAACAAGTGGAAACTACAGCA-CA--GCTATCGAAATTGACTCGATGGACATGTC 805
Query 886 TGAAAGTATGCAAGAGGCAATGCACCGCTCAAATTTAGAAACCAGTGGTGTGGGGTATGT 945
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 806 TGAAAGTATGCAAGAGGCGATGCTCCGTTCAAATTTAGAAACCAGTGGTGTGGAGTATGT 865
Query 946 TAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTCAATTCACC 1005
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 866 TAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTGAATTCACC 925
Query 1006 TTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTACGAGGAGGAACGAGCAGCGTACCA 1065
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 926 TTTAGCATCTTTTAGAAGCCTGCAACGAGTACTCTATGAGGAAGAACGAGCAGCGTACCA 985
Query 1066 CCAATCCGTGCAGCAAAGCAAGAGAGACGGGAGAGTTCATCCTCTTGCTTTCATTCACAA 1125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 986 CCAATCCGTGCAGCAAAGCATGAGAGACGGGAGAGTTCATCCTCTTGCTTTCATTCACAA 1045
Query 1126 CACATCAACATATCAGGCTTCCATGTGCAAGTTAATAGAATACTGCTTGAGTCCTGCCAT 1185
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1046 CACATCAACATATCAGGCTTCCATGTGCAAGTTGATCGAATACTGCTTGAGTCCTGCCAT 1105
Query 1186 TAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGG 1225
||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGG 1145
Score = 924 bits (500), Expect = 0.0
Identities = 607/657 (92%), Gaps = 13/657 (2%)
Strand=Plus/Plus
Query 1225 GTTAGCAATGCTGATGGATGAAGCTGAAGTTTTGGAAGCACAGAAACTGAAAGGAGCAGA 1284
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1177 GTTAGCAATGCTGATGCATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGCAGA 1236
Query 1285 GACAAGCGGGGGAGCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGACGATC 1344
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1237 GACAAGCGGGGGACCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATC 1296
Query 1345 GTAGAAAGATCTGTGACTAAAGGCACATGCCTTCCTCTTTGTGTATGTTTCTATTTGGAT 1404
|||||||||| || |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1297 GTAGAAAGATGTGCGACTAAAGGCGCATGCCTTCCTCTTTGTGTATGTTTCTATTTGGGC 1356
Query 1405 ATTTGTTTTCTTACAACTGTATCATAGGCAGACATCTGTTCTTAGTTTACTCATCTGTAG 1464
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1357 ATTTGTTTTCTTACAACTGTATCATAGGCAGACATCTGTTGTTAGTTTACCCATCTGTAG 1416
Query 1465 CATTATTGGGGTTTTTTCATTTTCATGGAAGATTAACCTTTTCCAAGAGAT-CTGT-A-A 1521
||||||| || ||||||| |||||||||||||| ||| ||||||||||||| |||| | |
Sbjct 1417 CATTATT-GGTTTTTTTCTTTTTCATGGAAGATGAACTTTTTCCAAGAGATGCTGTAATA 1475
Query 1522 TA--TAT--CAAATTCATAATGGATATGAGGTGGAAAAGAAAAAGTGAACCTTGATTGCA 1577
|| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1476 TATGTATAGCAAATTCATAATGAATATGAGGAGGAAAAGAAAAAGTGAACCTTGATTGCC 1535
Query 1578 TATTCATGATGAAAA-TTGATGGGAAAGTTACAGAAGC-TTTT-TCTCAGAAAATAACAG 1634
|| |||||||||||| ||||||| |||||||||| ||| |||| ||||||||||||||||
Sbjct 1536 TAATCATGATGAAAATTTGATGGTAAAGTTACAGCAGCTTTTTGTCTCAGAAAATAACAG 1595
Query 1635 TTTCTCTGTTGTTTAAAGGAAAAGTGAGTTCTTCTAGGTGTTGGAATCTATGAAGTTAGT 1694
||||| ||||| || |||||||||||||||||||| || ||||||||| |||||||||
Sbjct 1596 TTTCTGTGTTGGCTAGAGGAAAAGTGAGTTCTTCTACGTCATGGAATCTAAGAAGTTAGT 1655
Query 1695 GAAGCAGAAGCCTAGTCTCCTTTAGAGGATTTGGAAAGGGTG-ATAGATGTACAACACCT 1753
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1656 GAAGCAGAAGCCTAGTCTCCTTTAGAGGATTTGGAAAGGG-GCATAGATGTACAACATCT 1714
Query 1754 GATGATCTTCCTGACGTCGCTTCGCATGGAGAGAAATGCAGAAAGTGAAGCTAGAAACAG 1813
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1715 GATGATCTTCCTGACGTCGCTTCGCATGGAGAGAAATGCAGAAAGTGAAGCGAGAAAGAG 1774
Query 1814 TGTTGGGTAGACACGAACAGAGTTTCTGTGGGGGCTTATCCAATCGTGAGCAGAGTC 1870
|||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 1775 GGTTGGGTAGACACGAACAGAGTCTCTATGGGGGCTTATCCAATCGTGAGCGGAGTC 1831
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 45 AAAGAGGCAAAATCAAATCGAATTCTCGAA 74
||||||||||||||||||||||||||||||
Sbjct 1 AAAGAGGCAAAATCAAATCGAATTCTCGAA 30
> Ahg478001 jgi|Araly1|478001|fgenesh2_kg.3__702__AT3G06820.2
Length=1605
Score = 983 bits (532), Expect = 0.0
Identities = 641/690 (93%), Gaps = 21/690 (3%)
Strand=Plus/Plus
Query 757 GGGTGGAGGACGCGTTTCAGATTTTGAGGCTTTCTTTGTGAACAATACTGAGGCCAACAA 816
|||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 834 GGGTGGAGGACGGGTTTCAGATTTTGGGGCTTTCTTTGTTAACAATGCTGAGGCCAACAT 893
Query 817 CACCAGAAGAGATGGAACAAGTGG--A--A-A-CT------A---CAGCAGCACAGCAAT 861
|||| | ||||||||||| ||||| | | | || | |||||||||||| ||
Sbjct 894 CACCGGCAGAGATGGAACTAGTGGAAATTACAGCTCAGGCAATCTCAGCAGCACAGCTAT 953
Query 862 AGAAATTGACTCGATGGACATGTCTGAAAGTATGCAAGAGGCAATGCACCGCTCAAATTT 921
|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 954 AGAAATTGACTCCATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTT 1013
Query 922 AGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTC 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 AGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTC 1073
Query 982 ATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTA 1133
Query 1042 CGAGGAGGAACGAGCAGCGTACCACCAATCCGTGCAGCAAAGCAAGAGAGACGGGAGAGT 1101
|||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||
Sbjct 1134 CGAGGAGGAACGAGCAGCGTACCACCAATCGGTGCAGCAAATCATGAGAGACGGGCGAGT 1193
Query 1102 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAGGCTTCCATGTGCAAGTTAAT 1161
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCTTCCATGTGCAAGTTAAT 1253
Query 1162 AGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGAT 1221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGAT 1313
Query 1222 CCGGTTAGCAATGCTGATGGATGAAGCTGAAGTTTTGGAAGCACAGAAACTGAAAGGAGC 1281
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1314 CCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGC 1373
Query 1282 AGAGACAAGCGGGGGAGC-ATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAC 1340
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGAGACAAGCGGGGG-GCCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAG 1432
Query 1341 GATCGTAGAAAGATCTGTGACTAAAGG-CACATGCCTTCCTCTTTGTGTATGTTTCTATT 1399
|| |||||||||||||| ||||||| | |||| | | ||||||||||||||||||||||
Sbjct 1433 GACCGTAGAAAGATCTGCGACTAAAAGTCACACG--T-CCTCTTTGTGTATGTTTCTATT 1489
Query 1400 TGGATATTTGTTTTCTTACAACTGTATCAT 1429
|||| |||||||||||||||| ||||||||
Sbjct 1490 TGGACATTTGTTTTCTTACAATTGTATCAT 1519
Score = 597 bits (323), Expect = 9e-170
Identities = 347/359 (97%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 370 AATGACGATATCAACGGGCAGAACTACACGGGTCATTGGATGGTACCACTCCCATCCTCA 429
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 384 AATGACGATATCAACGGGCAGAACTACACGGGTGATTGGATGGTACCACTCCCATCCCCA 443
Query 430 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGAACACAAGCTATGTATCAGCTTTTAGA 489
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 444 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGA 503
Query 490 TTCTGGTTTTATTGGCCTCATCTTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGCAG 549
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 504 TTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAG 563
Query 550 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAAGCCGAATAGTATTCCTAAATCAAT 609
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 564 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAACCCGAATAGTATTCCTAAATCAAT 623
Query 610 GAGCCTGGTTCTTGCAAATAAAGATTCTGTTATCGATTTAGAATCTTCATTTAGTTCTTC 669
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 624 GAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATTTAGAATCGTCATTTAGTTCTTC 683
Query 670 GGACTCGATATACCAGAGATCGTCTTCTGCTCGGGGAGACAATCCTGAGCTCGACACAA 728
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 684 GGACTCGATATACCAGAGATCCTCTTCTGCTCGGGGAGACAATCCCGAGCTAGACACAA 742
Score = 401 bits (217), Expect = 8e-111
Identities = 291/324 (90%), Gaps = 15/324 (5%)
Strand=Plus/Plus
Query 1 CGATT-GTTTCTTCTTCGTTCTCCAGTTTCGTCGGATAAATCTAAAAAGAGGCAAAATCA 59
||||| | |||| || | ||| ||||||||||| | |||| || |||||||||||||||
Sbjct 50 CGATTCG-TTCTACTGCTTTCCCCAGTTTCGTCCGTTAAA-CT--AAAGAGGCAAAATCA 105
Query 60 AATCGAATTCTCGAAGAAGCAAAT---AACGTCTGCATAAAG-GTTTAAAGTTTATCTCT 115
||||||||||||||||| |||||| ||| |||||||| || |||||||| ||||||
Sbjct 106 AATCGAATTCTCGAAGACGCAAATAACAACATCTGCATACAGAGTTTAAAG---ATCTCT 162
Query 116 TCCGAAGAAGT--T-ATGTCTCTTACATGCGTTAATATGTCCGAGGATGTCTGGTTGACT 172
|| |||||||| | |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 163 TCGGAAGAAGTAATAATGTCTCTGACATGCGTAAATATGTCCGAGGATGTGTGGTTGACT 222
Query 173 TGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGAC 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGAC 282
Query 233 ATCGAGTACTCAAAGGACGGGGGAAGTGCCACAGCTATGATCTGGGGAGCATCGCCTCAG 292
||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 283 ATCGAGTACTCAAAGAACGGCGAAAGTGCCACAGCTATGATCTGGGCAGCATCGCCTCAG 342
Query 293 TCACGGTCTGATCGGCAGAAGGAT 316
||||| ||||||||||||||||||
Sbjct 343 TCACGATCTGATCGGCAGAAGGAT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5