BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80220.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909692 jgi|Araly1|909692|Al_scaffold_0002_2773 1031 0.0
Ahg900102 jgi|Araly1|900102|Al_scaffold_0004_752 385 3e-106
> Ahg909692 jgi|Araly1|909692|Al_scaffold_0002_2773
Length=762
Score = 1031 bits (558), Expect = 0.0
Identities = 702/771 (91%), Gaps = 12/771 (2%)
Strand=Plus/Plus
Query 1 ATGTGTAAGGAAAGACGTATAGTGTGTGAGTCAAGCAACAAGATCAGAGTATCGCCATAC 60
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTAAAGAAAGACGTATAATGTGTGAGTCAAGCAACAAGATCAGAGTATCGCCATAC 60
Query 61 CCGCTTCGATCTACTAGGACCAACAAACTCAAAGCAATTGAGTCACCTATTGATGAGTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 61 CCGCTTCGATCTACTAGGACCAACAAACTCAAAGCAATTGAGTCACCTATTGA-GA--CA 117
Query 121 -AATTGGGAAGATGTGCGGTGTATGATCTGCATGGAACCGCCACACGAAGCTGTGCTTTT 179
||| |||| |||||| ||||| ||||||||||||||||||| ||||| ||||| |||||
Sbjct 118 GAAT-GGGAGGATGTGAGGTGTGTGATCTGCATGGAACCGCCCCACGATGCTGTTCTTTT 176
Query 180 GACATGCTCGTCCTCACTCAATGGATGTCGTCCTTACATGTGCGGCACGAGTTTTCGTCA 239
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 177 GACATGCTCTTCCTCCCTCAATGGATGTCGTCCTTACATGTGCGGCACGAGTGTTCGTCA 236
Query 240 CTCCAACTGTTTCAAACAGTTTTGCAGAAACAACAGAAAAAAGCGCTCAAACACCAAGAC 299
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||
Sbjct 237 TTCCAACTGTTTCAAACAGTTTAGCAGAAACAACAGAAAAAAGCACTCAAACACTAAGAC 296
Query 300 CTTACATTGCCCTCTTTGTAGAGGAGAAGTCTTGGAGACGAAAAAGGCTTCGAAGACTGC 359
||||||||||||||| |||||||||||||| || |||||||||||||| |||||||| |
Sbjct 297 CTTACATTGCCCTCTATGTAGAGGAGAAGTGTTTGAGACGAAAAAGGCGGCGAAGACTAC 356
Query 360 AAGAAGATTCATGAATGCTAAACCGAGGTCTTGCCCTGTGGATGGCTGTGAATTTTCAGG 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 357 AAGAAGATTCATGAATGCTAAACCGAGGTCTTGCCCTGTGGATGACTGTGAATTTTCTGC 416
Query 420 GACATATGCTCACCTTAATAAGCACTTGAAAACTGAGCATCAGGGTCTTGTCCC-AGCAA 478
|| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| | |||
Sbjct 417 CACGTATTCTCACCTTAATAAGCACTTGAAAACTGAGCATCGGGGTATTGTCCCGA-CAA 475
Query 479 AGGTCGATCCACAAAGGCAAAGTAGGTGGGAAATGTTGGTAAGACATGCTGAATATGTTA 538
|||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 476 AGGTCGATCCACAAAGGCAATGTAGGTGGGAAATGATGGAAAGACATGCTGAATATGTTA 535
Query 539 ATCTCATGTCTGCAGCTGGGATTCCGCATATGTCTGGGGTTGTGCATCATCAACTTCCCA 598
|||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 536 ATCTCATGACTGCCGCTGGGATTCCACATATGTCTGAGGTTGTGCATCATCAACTTCCGA 595
Query 599 ACAATCATCATCTTCCGATGTTTCAGGTGGGCTTTAGTGGAACCATGCAAAATTTGGAT- 657
||||||||||||| || |||||||| ||| ||||| ||||||| ||||||||||| ||
Sbjct 596 ACAATCATCATCTACCAATGTTTCATGTGAACTTTAATGGAACCCTGCAAAATTTG-ATT 654
Query 658 GGTCCGAGTAATGTAAGTAACGGATTTGGTCCCGTCAACTACCCCCCAGTTTTTGTACCC 717
||||||||||||||||||||||||||| ||| ||||||| || || || |||| |||||
Sbjct 655 GGTCCGAGTAATGTAAGTAACGGATTTAGTCTCGTCAACCACGCCTCACTTTTCATACCC 714
Query 718 AGACTGCAGTTTCGACCAGTGTTTGACATGTATCGTGATAGGATTCCATGA 768
| ||| |||||||||||| || ||||||||||||| ||||| |||||||
Sbjct 715 ACACTACAGTTTCGACCAATG---GACATGTATCGTGGTAGGAATCCATGA 762
> Ahg900102 jgi|Araly1|900102|Al_scaffold_0004_752
Length=660
Score = 385 bits (208), Expect = 3e-106
Identities = 376/455 (83%), Gaps = 19/455 (4%)
Strand=Plus/Plus
Query 201 TGGATGTCGTCCTTACATGTGCGGCACGAGTTTTCGTCACTCCAACTGTTTCAAACAGTT 260
|||||||| |||||||||||||| |||||| ||||||||||||||||||| || |||||
Sbjct 117 TGGATGTCATCCTTACATGTGCGATACGAGTGTTCGTCACTCCAACTGTTTTAAGCAGTT 176
Query 261 TTGCAGAAACAACAGAAAAAAGCGCTCAAACACCAAGACCTTACATTGCCCTCTTTGTAG 320
| | ||| ||| ||| |||||||| || ||||||||||||||| || ||||| |||||
Sbjct 177 CCGTAAAAAGAACCGAACAAAGCGCTTAAGCACCAAGACCTTACAATGTCCTCTCTGTAG 236
Query 321 AGGAGAAGTCTTGGAGACGAAAAAGGCT-TCGAAG-ACTGCAAGAAGATTCATGAATGCT 378
||||||||| || ||| ||| ||| | | | ||| |||||||||||||| |||||||||
Sbjct 237 AGGAGAAGTATTCGAGGCGACAAACG-TGAC-AAGCACTGCAAGAAGATTTATGAATGCT 294
Query 379 AAACCGAGGTCTTGCCCTGTGGATGG-CTGTGAATTTTCAGGGACATATGCTCACCTTAA 437
|||||||||||||| |||| || || || |||| || ||||| ||| |||| |||||
Sbjct 295 CAACCGAGGTCTTGCTCTGTAGA-GGATTGCAAATTCTCTGGGACGTATTCTCAGCTTAA 353
Query 438 TAAGCACTTGAAAACTGAGCATCAG-GGTCTTGTCCCAGCAAA-GGTCGATCCACAAAGG 495
||||||||||||||||||||||| | ||| |||||||| |||| |||||||||||| ||
Sbjct 354 TAAGCACTTGAAAACTGAGCATC-GCGGTATTGTCCCA-CAAAAGGTCGATCCACAGAGA 411
Query 496 CAA-AGTAGGTGGGAAATGTTGGTA-AGACATGCTGAATATGTT-AATCTCATGTCTGCA 552
||| || |||||||||||| ||| | ||| |||||||||| ||| || |||||| |||||
Sbjct 412 CAACAG-AGGTGGGAAATGATGG-AGAGAGATGCTGAATACGTTGAA-CTCATGACTGCA 468
Query 553 GCTGGGATTCCGCATATGTCTGGGGTTGTGCATCATCAACTTCCCAACAATCATCATCTT 612
|||| |||||||||| | | | |||||||||||| || ||||||||| ||||||||| |
Sbjct 469 GCTGAGATTCCGCATGCGACCGAGGTTGTGCATCAACAGCTTCCCAACGATCATCATCAT 528
Query 613 CCG-ATGT-TT-CAGGTGGGCTTTAGTGGAACCAT 644
|| |||| || | |||| | ||| |||| ||||
Sbjct 529 CCTCATGTGTTTCGGGTGACCGTTAATGGAGCCAT 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5