BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80230.1 Length=946 Score E Sequences producing significant alignments: (Bits) Value Ahg477231 jgi|Araly1|477231|fgenesh2_kg.2__2361__AT1G80230.1 1114 0.0 > Ahg477231 jgi|Araly1|477231|fgenesh2_kg.2__2361__AT1G80230.1 Length=764 Score = 1114 bits (603), Expect = 0.0 Identities = 721/776 (93%), Gaps = 16/776 (2%) Strand=Plus/Plus Query 23 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGGAAACGACAAACCTAATTTT 82 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGG-AACGATAAACCTAATTTT 59 Query 83 CCCGAAGAATCGAGACCATTATGTGGAGGAGAATCGTTTCATCGCATCTTAAATCCATCT 142 |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 60 CCCGAAGAATCGTCACCATTATGTGGAGGAGAATCCTTTCATCGAATCTTAAATCCATCT 119 Query 143 CCGCC-GTCGGGTCCTGCGCGGCTCCGTCGTGCAGGCACGCCGTCGTAGAGTCCACTCAC 201 ||||| || |||||||||||||||||||||| || |||||||| || |||||||||||| Sbjct 120 CCGCCGGT-TGGTCCTGCGCGGCTCCGTCGTGTAGACACGCCGTTGTTGAGTCCACTCAC 178 Query 202 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCCATATTCTCTCGTTTA 261 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | Sbjct 179 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCGGTTTTCTCTCGTCAA 238 Query 262 ATCGGCTCCGCTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCTATT 321 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 239 ATCGGCTCCACTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCGATT 298 Query 322 GCAACCGGTCACGAGAAAGAGGAACTACAAGCCGAATTGGAGGGGAGGAAGCTGGACGAT 381 ||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 299 GCAACTGGGCACGAGAAAGAGGAACTAGAAGCCGAATTGGAGGGAAGGAAGCTGGACGAT 358 Query 382 ATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 441 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ATAGACTTTCCCGAGGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 418 Query 442 TACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 501 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TACGACATGAGAATTGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 478 Query 502 TGGTTTTGGCTGGAGAAAGGCAAGTC-TTTTGAATGCCCTGTGTGTACACAGTACTTCAA 560 ||||||||| ||||||| |||||| | ||||||||||||||||||||| |||||||| || Sbjct 479 TGGTTTTGGTTGGAGAAGGGCAAG-CATTTTGAATGCCCTGTGTGTACTCAGTACTTTAA 537 Query 561 GCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATCACTGATC 620 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 538 GCTTGAAGTGGTCGGCCCTGGAGGACCACCTGACGGACATGGTGATGACCATCACTGATC 597 Query 621 CAAGGAAAACAATCTATTGTAATAAGAAATAGTGTGGCTTCTGCTAAATGTGAAGCAGCC 680 |||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||| | Sbjct 598 CAAGGAAA-CAATCTATTGTAATAAGAAAGAGTATGGCTTCTG--AAATGTGAAGC--C- 651 Query 681 TCGTCTTGttttttttttttGGTTTTAA-TTCTACCCTCAGTTCTCTACCAATTGCTTCA 739 |||||||||| ||||||||| |||||| ||| | ||||||| ||||||||||||| ||| Sbjct 652 TCGTCTTGTTCTTTTTTTTT--TTTTAAGTTC-ATCCTCAGTGCTCTACCAATTGCCTCA 708 Query 740 GTGATTGCCTTAAACCGCCGAAAATAG-ATGGTCCATCTTCAGGCTCTCGTCGCCA 794 | |||||||| | |||| ||||||||| |||||||||||||||||||||||||||| Sbjct 709 GCGATTGCCTCAGACCGACGAAAATAGGATGGTCCATCTTCAGGCTCTCGTCGCCA 764 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35111206557 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5