BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80230.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477231 jgi|Araly1|477231|fgenesh2_kg.2__2361__AT1G80230.1 1114 0.0
> Ahg477231 jgi|Araly1|477231|fgenesh2_kg.2__2361__AT1G80230.1
Length=764
Score = 1114 bits (603), Expect = 0.0
Identities = 721/776 (93%), Gaps = 16/776 (2%)
Strand=Plus/Plus
Query 23 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGGAAACGACAAACCTAATTTT 82
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 TTGAAGGAGGTAGTCGGAGACTGAGAATCATCTGAGATCGG-AACGATAAACCTAATTTT 59
Query 83 CCCGAAGAATCGAGACCATTATGTGGAGGAGAATCGTTTCATCGCATCTTAAATCCATCT 142
|||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 60 CCCGAAGAATCGTCACCATTATGTGGAGGAGAATCCTTTCATCGAATCTTAAATCCATCT 119
Query 143 CCGCC-GTCGGGTCCTGCGCGGCTCCGTCGTGCAGGCACGCCGTCGTAGAGTCCACTCAC 201
||||| || |||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 120 CCGCCGGT-TGGTCCTGCGCGGCTCCGTCGTGTAGACACGCCGTTGTTGAGTCCACTCAC 178
Query 202 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCCATATTCTCTCGTTTA 261
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 179 CTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCGGTTTTCTCTCGTCAA 238
Query 262 ATCGGCTCCGCTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCTATT 321
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ATCGGCTCCACTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCGATT 298
Query 322 GCAACCGGTCACGAGAAAGAGGAACTACAAGCCGAATTGGAGGGGAGGAAGCTGGACGAT 381
||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 299 GCAACTGGGCACGAGAAAGAGGAACTAGAAGCCGAATTGGAGGGAAGGAAGCTGGACGAT 358
Query 382 ATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 441
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATAGACTTTCCCGAGGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTAC 418
Query 442 TACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 501
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TACGACATGAGAATTGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTC 478
Query 502 TGGTTTTGGCTGGAGAAAGGCAAGTC-TTTTGAATGCCCTGTGTGTACACAGTACTTCAA 560
||||||||| ||||||| |||||| | ||||||||||||||||||||| |||||||| ||
Sbjct 479 TGGTTTTGGTTGGAGAAGGGCAAG-CATTTTGAATGCCCTGTGTGTACTCAGTACTTTAA 537
Query 561 GCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATCACTGATC 620
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 GCTTGAAGTGGTCGGCCCTGGAGGACCACCTGACGGACATGGTGATGACCATCACTGATC 597
Query 621 CAAGGAAAACAATCTATTGTAATAAGAAATAGTGTGGCTTCTGCTAAATGTGAAGCAGCC 680
|||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||| |
Sbjct 598 CAAGGAAA-CAATCTATTGTAATAAGAAAGAGTATGGCTTCTG--AAATGTGAAGC--C- 651
Query 681 TCGTCTTGttttttttttttGGTTTTAA-TTCTACCCTCAGTTCTCTACCAATTGCTTCA 739
|||||||||| ||||||||| |||||| ||| | ||||||| ||||||||||||| |||
Sbjct 652 TCGTCTTGTTCTTTTTTTTT--TTTTAAGTTC-ATCCTCAGTGCTCTACCAATTGCCTCA 708
Query 740 GTGATTGCCTTAAACCGCCGAAAATAG-ATGGTCCATCTTCAGGCTCTCGTCGCCA 794
| |||||||| | |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 709 GCGATTGCCTCAGACCGACGAAAATAGGATGGTCCATCTTCAGGCTCTCGTCGCCA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5