BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80240.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340195 jgi|Araly1|340195|fgenesh1_pg.C_scaffold_2002294 1679 0.0
> Ahg340195 jgi|Araly1|340195|fgenesh1_pg.C_scaffold_2002294
Length=1116
Score = 1679 bits (909), Expect = 0.0
Identities = 1042/1108 (94%), Gaps = 2/1108 (0%)
Strand=Plus/Plus
Query 47 TACCAAGAAGCAGCACTCCTCTTAGCTCTCCTCTTCATCTCTTCGAATGTCGTCTTATCG 106
||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||
Sbjct 10 TACCAAGAAGCAGCACTCCTCGTAGCTCTCCTCTTCGTTTCTTCGAATGTCGTCGTATCG 69
Query 107 GCCCCAGTCCGCGATGGTTTATTACCAAACGGCAACTTCGAGTTGGGTCCTAAACCCTCC 166
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 70 GCCCCAATCCGCGATGGTTTATTACCAAACGGTAACTTCGAGTTGGGTCCTAAACCCTCC 129
Query 167 CAAATGAAAGGATCCGTGGTTAAGGAACGAACCGCCGTACCAAACTGGAACATAATCGGC 226
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 130 CAATTGAAAGGATCCGTGGTTAAGGAACGAACCGCCGTACCAAACTGGGACATAACCGGT 189
Query 227 TTTGTGGAGTTCATTAAATCCGGTCAGAAACAAGATGACATGGTCTTGGTCGTACCGCAG 286
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 190 TTTGTGGAGTACATCAAATCCGGTCAGAAACAAGACGACATGGTCTTGGTCGTACCGCAG 249
Query 287 GGTTCCTCCGCCGTTAGAC-TAGGCAACGAAGCCTCAATCTCCCAGAAAATATCCGTCCT 345
||||||||||||||| | | |||||||||||||||| |||||||||||||| |||||| |
Sbjct 250 GGTTCCTCCGCCGTTCG-CTTAGGCAACGAAGCCTCGATCTCCCAGAAAATCTCCGTCTT 308
Query 346 ACCTGGCCGTCTGTACTCAATAACGTTCAGCGCCGCTCGAACCTGCGCTCAAGACGAGAG 405
||| ||||||||||||||||| ||||||||||||||| |||| || |||||||||||||
Sbjct 309 ACCCGGCCGTCTGTACTCAATCACGTTCAGCGCCGCTAGAACATGTGCTCAAGACGAGAA 368
Query 406 GCTCAATATATCCGTGACGCATGAGTCAGGTGTGATCCCTATCCAGACGATGTACGGCAG 465
|||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 369 ACTCAATATCTCCGTGACACACGAGTCAGGTGTGATCCCTATCCAGACAATGTACGGCAG 428
Query 466 CGATGGTTGGGACTCATACTCATGGGCTTTTAAAGCTGGTGGTCCCGAAATCGAGATCCG 525
|||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||
Sbjct 429 TGATGGTTGGGACTCATACGCATGGGCTTTTAAAGCTGGTGGCCCCGAAATCCATATCCG 488
Query 526 GTTCCATAACCCTGGTGTTGAAGAGCACCCGGCTTGCGGACCTTTGATCGACGCCGTGGC 585
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 489 GTTCCATAACCCGGGTGTTGAAGAGCACCCGGCTTGTGGACCGTTGATCGACGCCGTGGC 548
Query 586 TATCAAGGCTTTGTTCCCTCCCAGATTCTCTGGATATAATCTGATAAAGAATGGGAATTT 645
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 549 TATCAAGGCTTTGTTCCCTCCCAGATTCTCTGGATACAATCTGATAAAGAATGGGAACTT 608
Query 646 CGAAGAAGGACCTTACGTGTTTCCCACGGCAAAATGGGGAGTACTGATCCCACCGTTCAT 705
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 609 CGAAGAAGGACCTTACGTGTTCCCCACGGCAAAATCGGGAGTACTGATCCCACCGTTCAT 668
Query 706 CGAGGACGATAACAGCCCATTGCCCGGTTGGATGATCGAGTCTCTCAAAGCCGTTAAGTA 765
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 669 CGAGGACGATAACAGCCCATTGCCCGGTTGGATCATTGAGTCTCTCAAGGCCGTTAAGTA 728
Query 766 CGTAGACAAAGCACACTTCGCTGTCCCCGAAGGACACCGAGCCATCGAGCTTGTTGGAGG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CGTAGACAAAGCACACTTCGCTGTCCCCGAAGGACACCGAGCCATCGAGCTTGTTGGAGG 788
Query 826 CAAAGAGAGCGCCATTTCTCAGATAGTGAGGACGTCACTGAACAAATTCTACGCCCTCAC 885
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 789 CAAAGAGAGCGCCATTTCTCAGATTGTAAGGACGTCACTGAACAAATTCTACGCCCTCAC 848
Query 886 GTTCAACGTGGGAGACGCCAGAGACGGTTGTGAGGGACCAATGATTGTGGAAGCGTTCGC 945
||||| ||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 849 GTTCAGCGTCGGAGACGCCAGAGACGGTTGTGAGGGACCGATGACAGTGGAGGCGTTCGC 908
Query 946 TGGACAGGGCAAGGTCATGGTGGACTACGCTTCTAAAGGAAAAGGCGGGTTTAGACGTGG 1005
|||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 909 TGGACAAGGCAAGGTCATGGTGGATTACGCGTCTAAAGGGAAAGGCGGGTTTAGACGTGG 968
Query 1006 GAGGCTTGTGTTCAAGGCAGTGTCGGCCAGGACACGTGTCACTTTCTTGAGCACGTTTTA 1065
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GAGGCTTGTGTTCAAGGCGGTGTCGGCCAGGACACGTGTCACTTTCTTGAGCACGTTTTA 1028
Query 1066 CCACATGAAAAGCGATCACTCTGGCTCGCTATGTGGTCCGGTGATCGATGATGTTAGGCT 1125
||| ||||| || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1029 CCATATGAAGAGTGATCACTCTGGCTCGCTATGTGGTCCGGTGATCGATGACATCAGGCT 1088
Query 1126 GGTAGCGGTTGGGAAACTCCGAGGATGA 1153
||| |||||| |||||||||||||||||
Sbjct 1089 GGTGGCGGTTCGGAAACTCCGAGGATGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5