BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80245.1

Length=829
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316935 jgi|Araly1|316935|fgenesh1_pm.C_scaffold_2001968           593    5e-169


> Ahg316935 jgi|Araly1|316935|fgenesh1_pm.C_scaffold_2001968
Length=414

 Score =  593 bits (321),  Expect = 5e-169
 Identities = 357/375 (95%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  121  ATGGAGGAATTAACCCAAATCTTGAAGAACAATAGGACAGATGATCTCACTTGGTTTTGC  180
            ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATGGAGGAATTAAGCCAACTCTTGAAGAACAATAGGACGGATGATCTCACTTGGTTTTGC  60

Query  181  TCTCTCTCTGAATCTGAACTGGATTTGCTCATCAGCTTAAAGAAGCTAGCCATTCAACGC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCTCTCTCTGAATCTGAACTGGATTTGCTCATCAGCTTAAAGAAGCTAGCCATTCAACGC  120

Query  241  GCCAAAATAAGTGGTCACCAAGAACTAGCTGACAAATTTGATCTTAAGTTGCTCCGATCT  300
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct  121  GCCAAAATAAGTGGTCACCAAGAACTAGCTGACAAATTTGATCTCAAGTTGCTCCGAGCT  180

Query  301  CTCGGGCTTGTGCTAATGGAGCACGCGAGGAAAAGGGTACAAAATGATACTTCTCTTGCT  360
            ||||||||||||||||||||| ||| ||  |||||||||||| ||||||||| |||||| 
Sbjct  181  CTCGGGCTTGTGCTAATGGAGTACGTGAAAAAAAGGGTACAAGATGATACTTGTCTTGCC  240

Query  361  CCGAGTGTTGTTCATCAACTCAGGCTTTTGGATAACTGCAATTTGTTGAAAACGCATGTA  420
            || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct  241  CCAAGTGTTGTTCATCAGCTCAGGCTTTTGGATAACTGCAATTTGTTGAAAACGCATGAA  300

Query  421  GATGATGCTGTAGACATTGAGGAGATTCTGACTCAAATCTGCGACAACAAATCAAAAAAG  480
            |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  301  GATGATACTGTAGACATGGAGGAGATTCTGACTCAAATCTGCGAAAACAAATCAAAAAAG  360

Query  481  AAAGCACGGAAAAGG  495
            |||||||||||||||
Sbjct  361  AAAGCACGGAAAAGG  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30650825268


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5