BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80270.1
Length=2071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477224 jgi|Araly1|477224|fgenesh2_kg.2__2354__AT1G80270.1 2896 0.0
> Ahg477224 jgi|Araly1|477224|fgenesh2_kg.2__2354__AT1G80270.1
Length=1944
Score = 2896 bits (1568), Expect = 0.0
Identities = 1844/1972 (94%), Gaps = 39/1972 (2%)
Strand=Plus/Plus
Query 105 ATGTTCGCTCTTTCCAAGGTTTTACGAAGAACGCAGAGACTCCGACTGGGAGCTTGTTCT 164
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGCTCTTTCCAAGGTTTTGCGGAGAACGCAGAGACTCCGACTGGGAGCTTGTTCT 60
Query 165 GCTGTGTTTTCAAAAGATATACAATTAGGAGGAGAAAGGA-----G---CT-TTGATTCC 215
||||||| |||||||||||||| | |||||||||||||| | || |||| |||
Sbjct 61 GCTGTGTACTCAAAAGATATACAGTCAGGAGGAGAAAGGAGCTTTGTCTCTCTTGAATCC 120
Query 216 AATTCGATTGCTTCTACTAAACGTGAAGCTGTGCCAAGATTTTACGAGATCTCCTCTTTG 275
|||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AATTCGATTGTTTCTAGTAAACGTGAAGCTGTGCCAAGATTTTACCAGATCTCCTCTTTG 180
Query 276 AGTAATCGTGCTCTTTCCTCCAGTGCTGGCACTAAAAGTGATCAAGAGGAAGACGACCTC 335
||||| ||||| |||||||| | ||||||||||||||| ||||||||||| |||||||||
Sbjct 181 AGTAAACGTGCACTTTCCTCTAATGCTGGCACTAAAAGCGATCAAGAGGACGACGACCTC 240
Query 336 GAAGACGGTTTCTCAGAACT-GGAAGGTTCAAAGTCTGGCCAAGGTTCAACTAGTAGTGA 394
|||||||||||||||||||| |||| |||||||||||| ||||| | | || ||||||||
Sbjct 241 GAAGACGGTTTCTCAGAACTGGGAA-GTTCAAAGTCTGCCCAAGATACTACAAGTAGTGA 299
Query 395 TGAAGATGAGGGAAAGCTCTCCGCTGATgaagaagaagaagaagaaCTAGACCTCATTGA 454
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TGATGATGAGGGAAAGCTCTCCGCTGATGAAGAAGAAGAACTAGAACTAGACCTCATTG- 358
Query 455 AACCGACGTTAGTAGA-AAAACAGTTGAAAAGAAACAATCTGAGCTATTTAAGACCATTG 513
| || ||||| | | ||| | ||||||||||| |||||||||||||||||||||||
Sbjct 359 -A-TGA---TAGTA-ATAGAACCGCTGAAAAGAAACCATCTGAGCTATTTAAGACCATTG 412
Query 514 TCTCCGCACCCGGTCTGTCTATAGGTAGTGCTCTTGATAAATGGGTGGAAGAAGGAAATG 573
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 413 TCTCCGCACCAGGTCTGTCTATAGGTAGTGCACTTGATAAGTGGGTGGAAGAAGGAAATG 472
Query 574 AGATCACTCGAGTTGAGATTGCTAAGGCAATGCTCCAGCTGCGCAGGCGTCGCATGTATG 633
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 473 AGATCACTCGAGTCGAGGTTGCTAAGGCAATGCTCCAGCTGCGCAGGCGTCGGATGTATG 532
Query 634 GAAGAGCGTTACAGATGTCAGAATGGTTGGAAGCAAATAAGAAAATTGAAATGACTGAGA 693
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 533 GAAGAGCGTTGCAGATGTCAGAATGGTTGGAAGCAAATAAGAAAATTGAAATGAATGAGA 592
Query 694 GAGATTATGCTTCTCGGTTAGATCTGACAGTTAAGATTCGTGGTTTAGAAAAGGGAGAAG 753
|||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 593 GAGATTATTCTTCTCGGTTAGATCTGACAGTTAAGATACGTGGCTTAGAAAATGGAGAAG 652
Query 754 CTTGTATGCAGAAGATCCCAAAATCTTTTAAAGGGGAAGTGCTTTACCGTACCCTCTTGG 813
||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 653 CTTATATGCAGAAGATCCCGAAATCTTTCAAAGGGGAAGTGATTTACCGTACCCTCTTGG 712
Query 814 CGAATTGTGTTGCTGCTGGCAATGTGAAGAAATCCGAACTGGTGTTTAACAAAATGAAGG 873
|||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 713 CGAACTGTGTGGCTGCTGGCAATGTGAAGAAATCCGAACTGGTGTTCAACAGAATGAAGG 772
Query 874 ACTTGGGATTCCCTCTCTCTGGATTTACTTGTGATCAGATGCTTCTGCTCCACAAGAGGA 933
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 773 ACTTGGGATTCCCTCTCTCTGGATTTACTTGTGATCAGATGCTTCTCCTCTACAAGAGGA 832
Query 934 TCGACAGGAAGAAAATTGCTGATGTACTATTGCTCATGGAGAAAGAAAATATCAAGCCAA 993
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 833 TCGACAGGAAGAAAATTGCTGATGTGCTATTGCTCATGGAGAAAGAAAATGTCAAGCCAA 892
Query 994 GTCTTCTCACTTACAAAATCCTGATTGATGTCAAAGGTGCAACAAATGACATAAGTGGTA 1053
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 893 GTCTTCTCACTTACAAAATCCTGATTGATGTCAAAGGGGCAACAAATGACATAAGTGGGA 952
Query 1054 TGGAGCAAATTCTGGAGACAATGAAAGATGAAGGTGTTGAACTGGACTTCCAGACGCAAG 1113
||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 953 TGGAGCAAATTTTGGAGACAATGAAAGATGAAGGTGTTGAACCGGACTTCCAGACACAAG 1012
Query 1114 CTCTCACTGCTAGACACTATTCGGGAGCTGGCCTTAAAGATAAAGCCGAGAAAGTCTTGA 1173
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1013 CTCTCACTGCTAGACACTATTCGGGAGCTGGGCTTAAAGAGAAAGCCGAGAAAGTCTTGA 1072
Query 1174 AAGAGATGGAAGGTGAAAGCTTAGAGGCAAATCGCCGGGCATTCAAAGATTTGCTCTCCA 1233
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 AAGAGATGGAAGGTGAAAGCTTAGAGGCAAATCGCCGGGCGTTCAAAGATTTGCTCTCCA 1132
Query 1234 TCTATGCCTCTCTTGGGAGAGAAGATGAAGTGAAAAGAATATGGAAGATCTGTGAATCAA 1293
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1133 TCTATGCCTCTCTTGGGAGAGAAGATGAAGTGAAGAGAATATGGAAGATCTGTGAATCAA 1192
Query 1294 AGCCCTACTTTGAGGAATCCCTTGCTGCAATCCAAGCTTTTGGAAAGCTCAATAAAGTGC 1353
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1193 AGCCCTACTTTGAGGAATCCCTTGCTGCAATCCACGCTTTTGGAAAGCTCAATAAAGTGC 1252
Query 1354 AAGAAGCAGAGGCGATTTTTGAGAAGATTGTGAAGATGGACAGAAGAGCTTCTTCTAGTA 1413
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1253 AAGAAGCAGAGGCGATTTTTGAGAAGATTGTGAAGATGGGCAGAAGAGCTTCTTCTAATA 1312
Query 1414 CTTACTCCGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATC 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CTTACTCCGTTCTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATC 1372
Query 1474 TGGTTAAACGAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCA 1533
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCGTTAAACGAATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCA 1432
Query 1534 TCAAGCTCTATGTGGAAGCTGGAGAAGTTGAAAAGGCTGATTCTTTGCTGGACAAGGCAT 1593
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1433 TCAAGCTCTATGTGGAAGCTGGGGAAGTTGAAAAGGCTGATTCTTTGCTGGACAAGGCAT 1492
Query 1594 CAAAACAGAGCCATACAAAACTGATGATGAACTCCTTCATGTATATCATGGACGAGTACT 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1493 CAAAACAGAGCCATACAAAACTGATGATGAACTCCTTCATGTATATCATGGACGAATACT 1552
Query 1654 CAAAACGGGGAGATGTTCATAACACAGAGAAGATATTCCTAAAAATGAGGGAAGCTGGGT 1713
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1553 CAAAACGGGGAGATGTTCATAACACAGAGAAGGTATTCCTAAAAATGAGGGAAGTTGGGT 1612
Query 1714 ATACATCTCGGCTTAGGCAGTTCCAAGCCCTCATGCAGGCTTACATAAACGCCAAATCTC 1773
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |
Sbjct 1613 ATACATCTCGGCTTAGGCAGTTCCAAGCTCTCCTGCAGGCTTACATAAACGCCAAAGCCC 1672
Query 1774 CTGCATATGGAATGCGAGATAGATTGAAGGCGGATAATATCTTTCCAAACAAATCCATGG 1833
||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||
Sbjct 1673 CTGCATATGGAATGCGAGATAGAATGAAAGCCGATAATATATTTCCAAACAAATCCATGG 1732
Query 1834 CTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCTGGATT 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CTGCACAGTTGGCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCTGGATT 1792
Query 1894 GAGTAGTCTCTCTCCCTACACTTTTCTTCTATCTGCTTGCAAGAAGTATCTCATTTGTCG 1953
|||||||||||||| || |||||||||| | ||| ||||||||||||||||||||||| |
Sbjct 1793 GAGTAGTCTCTCTCTCTTCACTTTTCTTATTTCTCCTTGCAAGAAGTATCTCATTTGTAG 1852
Query 1954 TCCTAACGTTTAGTTTGAGAGAGTAACGTTAAGTTTAAGAACCTGCTTAGTTGCTGTGTT 2013
||||||||||||| || | ||| | | | |||||||||||||||||
Sbjct 1853 TCCTAACGTTTAGCTT-A-AGA--A---T------------C-TGCTTAGTTGCTGTGTT 1892
Query 2014 TTTAATGTTTCTATTCGGTTCTTTGGTGATCACACTTCAGAGACCTTCAAGT 2065
|| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1893 TTAAATGTTTCTGTTGGGTTCTTTGGTGATCACACTTCAGAGACCTTCAAGT 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77894551025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5