BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80280.1
Length=2687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477223 jgi|Araly1|477223|fgenesh2_kg.2__2353__AT1G80280.1 3225 0.0
Ahg471750 jgi|Araly1|471750|fgenesh2_kg.1__1704__AT1G15490.1 1762 0.0
> Ahg477223 jgi|Araly1|477223|fgenesh2_kg.2__2353__AT1G80280.1
Length=2552
Score = 3225 bits (1746), Expect = 0.0
Identities = 2041/2175 (94%), Gaps = 53/2175 (2%)
Strand=Plus/Plus
Query 238 CtttttttCCTCTTCATCCTCGCCGCCGGCTTATGGCCAACTCGCCACCACCTTCGTCGC 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTTTTTTTTCTCTTCATCCTCGCCGCCGGCTTATGGCCAACTCGCCACCACCTTCGTCGC 245
Query 298 GAAATCCTCCGAAGTTGTTGGTGGATTGTTGGTCGTTTCCGTTTCTTCTCTCTATGGTTC 357
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 246 GAAATCCTCCGAA---GTTGGTGGATTGTTGGTCGTTTCCGTTTCTTCTCTCTAGGGTTC 302
Query 358 CTACTCCCTCATAATTTAAGGATCTGTATCGGAAT-AA-CCGAAACGATCTCCGGTTTCG 415
| |||||| |||||||||||||||||||||||| | || || |||||||| | |
Sbjct 303 CAACTCCCACATAATTTAAGGATCTGTATCGGATTCAATCC--AACGATCT-C-----C- 353
Query 416 GATTTGAATATTTTGGGGGAAATTAAAAGAATGGGGAAAGGTTGGTTCATGGTAGAGAAA 475
|||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 354 GATTTGAATA-TTTCGGGG------AAAGAATGGGGAAAGGTTGGTTTATGGTAGAGAAA 406
Query 476 GCTAGAAGATGCTTAAGGACGGTGTTCTTCATGGTTGCGATGCTT-GTCTCGCTGTTAGT 534
|| ||||||||||||||||| || |||||||||||||||||| || | ||||||||||||
Sbjct 407 GCGAGAAGATGCTTAAGGACCGTCTTCTTCATGGTTGCGATG-TTGGCCTCGCTGTTAGT 465
Query 535 TTCTTCGTTGCCTGTGCTTGTAGCCATCGGCGACGTTTTGGTTCCGACCTTTTTGCTTTC 594
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 466 TTCGTCGTTGCCTGTGCTTGTAGCCATAGGCGACGTGTTGGTTCCGACCTTTTTGCTTTC 525
Query 595 AAGCTTTACCTGTTTGACGTGTTACGGCTTCAAGGAGCATCTGAGTCGATACGCTTTCAA 654
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 526 GAGCTTTACTTGTTTGACGTGCTACGGCTTTAAGGAGCATCTGAGTCGATACGCTTTCAA 585
Query 655 GAGCTCTTTGACTGATATTCCTCTCGTCTCCCTCGTCAGATCTTTCCTTGTCATCTGTGT 714
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 586 GAGCTCTTTGACTGATATTCCTCTTGTCTCCCTCGTCAGATCTTTCCTTGTCATCTGTGT 645
Query 715 CTACTCTCTATCCGATGCTCCTGCACTTTCGCATGGCCCTTACCTTGGAACTGTATCGCT 774
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 646 CTACTCTCTATCCGATGCTCCTGCACTCTCGCACGGCCCTTACCTAGGAACTGTGTCGCT 705
Query 775 GTGTTCTGTTGTTTCTGTTGTTCTTCTATCAGTAAAAGCTTGCGTTTTTACTGCAAATTC 834
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTGTTCTGTTGTTTCAATTATTCTTCTATCAGTAAAAGCTTGCGTTTTTACTGCAAATTC 765
Query 835 TCAACTTAACGACC-AAGCCTCGTCCTCTCCGTCAAGGCAAAGACTCCATCTGAAAAAGT 893
||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 766 TCAACTTAACG-CCGAAGCCTCGTCCTCTCCGTCAAGGCAACGACTCCATCTGAAGAAGT 824
Query 894 CTTGGGGGATGCCAGTTTTGTTCCTTTCATCTGTTGTTTTTGCTCTTGGTCATATGGTTG 953
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 825 CTTGGGGGATGCCAGTTTTGTTCCTTTCGTCTGTGGTTTTTGCTCTTGGTCATATGGTTG 884
Query 954 TTGCTTATAGAACAAGTTGCAGAGCTAGGAGGAAACTCTTGTATCACAGAGTTGACCCTG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 885 TTGCTTATAGAACAAGTTGCAGAGCTAGGAGGAAACTCTTGTATCACAGAGGGGACCCTG 944
Query 1014 AAGCTGTTCTTTCTTGCAAAAGTGTCTTCTCTGGTTACCAGAAAGTCCCACGTTCTCCAA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 945 AAGCTGTTCTTTCTTGCAAAAGTGTCTTCTCTGGTTACCAGAAAGTCCCACGTTCTCCCA 1004
Query 1074 TTCCTTTGGTAGGAAAGGCCTCCAAGGTTGATGGCGAGGCAAGACGAAAGCTGCATCCTT 1133
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1005 TTCCTTTGGTAGGAAAGGCCTCCAAGATTGATGGCGAGGCTAGACGAAAGCTGCATCCTT 1064
Query 1134 CAGTATCCAACGATGACGGAGAGCTACCTGCGAGATTGCTTGCTGATCTTGACAGCTTAT 1193
||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1065 CAGCATCCAACGATGAAGGAGAGCTCCCTGCGAGATTGCTTGCTGATCTTGACAGCTTAT 1124
Query 1194 TCATTACAGTCAGAGGGCTCACTGTGCATTACAAGATTTGCACACCTGCTTCTCCTCGCC 1253
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1125 TCATTACAGTCAGAGGGCTCACTGTGCATTACAAGATTTGCACACCTGGTACTCCTCGCC 1184
Query 1254 ACTCTATCTCCTCCTCAGTTGAAGCCAACTCTATGCTTAATATGCCAGAGGCGATGGTGG 1313
|||| | ||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 1185 ACTC-A--------ACAGTTGAAGCCAACTCTATGCTTAACATGCCAGAGGCCATGGCGG 1235
Query 1314 GAAGGTTGAAGCTTGACAGGAATATATTGAGCATGGTCACGAGAAACAAGCTCAACCATC 1373
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1236 GAAGGTTGAAGCTTGACAGGAATATACTGAGCATGGTCACGAGAAACAAGCTCAATCATC 1295
Query 1374 ACCACCATAGGAGCTACAGCAGTCTGTTTAACAATTCTTCTTCCTTGCACGACCCTCTCC 1433
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1296 ACCACCATAGGAGCTACAGTAGTCTCTTTAACAATTCTTCTTCCTTGCACGACCCTCTCC 1355
Query 1434 TTGATGG-TCTTCCTACTTCTCCTCGTCTTTTCAAAGATATTCAGGAAGAATCGTGCCGA 1492
| ||||| || |||||| | | ||| | || | |||||||||| ||||||||
Sbjct 1356 TAGATGGTTC-TCCTAC-T-T-CTC--C---TC---G----TCAGGAAGAAGCGTGCCGA 1399
Query 1493 GAGGATGGCATCAATGTGTCCAATTTTGGTGCCACGGAACAGCAAGATGTTGGTGGAAAC 1552
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 1400 GAGGATGTCATCAATGTGTCCAATTTTGGTGCCACGGAACAGCAAAATGCGGGTGGAAGC 1459
Query 1553 GGCCAATTTGGTGTAGTGTTGGTCCATGGATTTGGCGGAGGAGTGTTTTCTTGGAGACAT 1612
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 GGTCAATTTGGTGTTGTGTTGGTCCATGGATTTGGCGGAGGAGTGTTTTCTTGGAGACAT 1519
Query 1613 GTGATGAG-TTCTCTTGCCCATCAACTTGGCTGTGTTGTCACTGCATTTGATAGGCCTGG 1671
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1520 GTGATG-GCTTCTCTTGCCCATCAGCTTGGCTGTGTTGTCACTGCATTTGATAGGCCTGG 1578
Query 1672 TTGGGGATTAACCGCCAGACCTCATAAAAAGGATTTGGAAGAAAGAGAGATGCCAAACCC 1731
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1579 TTGGGGATTAACCGCCAGACCTCATAAAAAGGATTTGGAAGAAAGAGAGATGCCTAACCC 1638
Query 1732 TTACACTCTGGATAATCAGGTAGACATGCTTCTTGCCTTTTGCCACGAAATGGGATTTGC 1791
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 1639 TTACACTCTGGAAAATCAGGTAGATATGCTTCTTGCTTTTTGCCACGAAATGGAATTTGC 1698
Query 1792 TTCTGTAGTCTTGGTTGGCCATGATGATGGAGGTTTGCTTGCTCTCAAGGCTGCACAAAG 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TTCTGTAGTCTTGGTTGGCCATGATGATGGAGGTTTGCTTGCTCTCAAGGCTGCACAAAG 1758
Query 1852 ATTGCTAGAAACAAAAGATCCCATCAAAGTCAAAGGAGTGGTTTTGCTTAATGTAAGCTT 1911
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1759 ATTGCTAGAATCAAAAGATCCCATCAAAGTAAAAGGAGTGGTTTTGCTTAATGTAAGCTT 1818
Query 1912 GACGAGGGAAGTAGTGCCAGCTTTTGCAAGAATACTTCTGCACACATCACTAGGAAAGAA 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 GACGAGGGAAGTAGTGCCAGCTTTTGCAAGAATACTTCTGCACACATCACTAGGAAAGAA 1878
Query 1972 ACACCTTGTTCGTCCGCTTTTACGCACTGAAATAGCTCAGGTGGTGAATCGCAGAGCTTG 2031
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1879 ACACCTCGTTCGCCCGCTTTTACGCACTGAAATAGCTCAGGTGGTGAATCGCCGAGCTTG 1938
Query 2032 GTATGATCCTGCCAAGATGACAACCGATGTCTTAAGGCTATACAAGGCACCACTTCATGT 2091
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1939 GTATGATCCTGCCAAGATGACAACAGATGTCTTAAGGCTATACAAGGCACCACTTCATGT 1998
Query 2092 GGAAGGCTGGGATGAGGCACTTCACGAGATAGGCAGACTCTCATCCGAGATGGTGCTTCC 2151
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1999 GGAAGGCTGGGATGAGGCGCTTCACGAGATAGGCAGACTCTCATCTGAGATGGTGCTTCC 2058
Query 2152 AACTCAAAATGCATTGTCACTTCTCAAGGCAGTGGAAAACTTACCAGTATTAGTCGTTGC 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 AACTCAAAATGCATTGTCACTTCTCAAGGCAGTGGAAAACTTACCAGTATTAGTCGTTGC 2118
Query 2212 TGGAGCCGAAGACGCACTTGTTCCCCTCAAGTCCTCCCAAGTCATGGCTTCAAAACTCGA 2271
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2119 TGGAGCAGAAGACGCACTTGTTCCCCTCAAGTCCTCCCAAGTCATGGCTTCAAAACTCGT 2178
Query 2272 AAACTCTAGGCTAGTAGCAATCTCAGGATGCGGACATCTGCCACATGAGGAGTGTCCCAA 2331
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2179 AAACTCTAGGCTAGTAGCAATCTCAGGATGCGGACATCTACCACACGAGGAGTGTCCCAA 2238
Query 2332 GGCACTTCTTGCAGCCATGTGCCCATTCATAAGCAGACTTGTATTTagtgaggactgagt 2391
||| |||||||||||||||| ||||||||| |||||||||||| |||||||||| ||| |
Sbjct 2239 GGCGCTTCTTGCAGCCATGTCCCCATTCATTAGCAGACTTGTACTTAGTGAGGAGTGACT 2298
Query 2392 gactgagtgatcact 2406
|||||||||||||||
Sbjct 2299 GACTGAGTGATCACT 2313
Score = 361 bits (195), Expect = 2e-98
Identities = 252/277 (91%), Gaps = 13/277 (5%)
Strand=Plus/Plus
Query 2406 tgtacttagtgaggagtgagtgactgagtgaTCACTTCTAGTTGTCTTCTTAGCTCACAA 2465
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2278 TGTACTTAGTGAGGAGTGACTGACTGAGTGATCAC-TCTAGTTGTCTTCTTAGCTGACAA 2336
Query 2466 TCGATTAGTGTTTGCGAGttttttttGTCTGCCCCAAAAGGAAAGAAGTTGGGGTGATT- 2524
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2337 TCGATTAGTGTTTGCGGGTTTTTTTAATCTGCCCCAAAAGGAAAGAAGTTGGGGTGATTT 2396
Query 2525 -GAGGTCTTAGTAAGTCTGTATTCATTATAAGCAGAGTTATTGTAACATTCTCTGTTTTT 2583
|||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2397 TGAGGTCTTGGTAATTCTGTATTCATTATAAGCAGAGTTAATGTATCATTCTCTGTTTTT 2456
Query 2584 CTCATCAGAGTTTTTAATGGTTTGGAATAATTCTGTTTATTTTCCACTTAAGA-GAAGAG 2642
|||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 2457 CTCATCAGAGTTGTTAATGGTT-GGAATAATTCTGTTTATTTTCCACTTAAAATGAAGAG 2515
Query 2643 TGGCT-A------AA-TCTTTGTAAAATTTTGCGGTA 2671
||||| | || ||||||||| |||||||||||
Sbjct 2516 TGGCTGAGCTGCTAAATCTTTGTAAGATTTTGCGGTA 2552
Score = 182 bits (98), Expect = 2e-44
Identities = 155/179 (87%), Gaps = 18/179 (10%)
Strand=Plus/Plus
Query 13 GAAACGTTGTAGAGaaaaaaaGGAGCAGAAGAAAACGGAGGTTTTTGTTTAATTTCCGGA 72
||||||||||||||||||| |||||||||||||||||||||||||||||| || | |
Sbjct 1 GAAACGTTGTAGAGAAAAATAGGAGCAGAAGAAAACGGAGGTTTTTGTTT--TT---GTA 55
Query 73 -TCGTCCAAAAGTTTCTCttttttttCT-CTTCCTTCATTGTTTCGCTGTTCCTGCGATT 130
| ||||||||||||||||||||| || || | ||| ||||||||| ||||||||||||
Sbjct 56 AT--TCCAAAAGTTTCTCTTTTTTT-CTTCT-C-TTCCTTGTTTCGCCGTTCCTGCGATT 110
Query 131 CTGAAACTCCTCAAGCTTT-C--C---ATTCAGAATCGTAGCAATGGCTTTTCCTCTTT 183
|||||| |||||||||||| | | |||||||||||||||||||||||| |||||||
Sbjct 111 CTGAAATTCCTCAAGCTTTTCATCTTCATTCAGAATCGTAGCAATGGCTTTCCCTCTTT 169
> Ahg471750 jgi|Araly1|471750|fgenesh2_kg.1__1704__AT1G15490.1
Length=2602
Score = 1762 bits (954), Expect = 0.0
Identities = 1643/1966 (84%), Gaps = 85/1966 (4%)
Strand=Plus/Plus
Query 452 AAAGGTTGGTTCATGGTAGAGAAA-GCTAGAAGATGCTTAAGGACGGTGTTCTTCATGGT 510
||| ||||||| |||| || ||| || |||||||| || ||||||||||||||||||||
Sbjct 420 AAAAGTTGGTTTTTGGTTGA-AAAGGCGAGAAGATGTTTGAGGACGGTGTTCTTCATGGT 478
Query 511 TGCGATGCTTGTC-TCGCTGTTAGTTTCTTCGTTGCC-TGTGCTT-GTAGCCATCGGCGA 567
||| ||| ||| | || ||||||||||| || ||||| | || || ||||| || || ||
Sbjct 479 TGCCATG-TTGGCTTCTCTGTTAGTTTCGTCCTTGCCAT-TG-TTAGTAGCTATAGGTGA 535
Query 568 CGTTTTGGTTCCGACCTTTTTGCTT-TCAAGCTTTACCTG-TTTGACGTGTTACGGCTTC 625
|||||||| |||| ||| ||| || || |||||||| || || |||||||||||| |
Sbjct 536 TGTTTTGGTCCCGAGCTTCTTG-TTGTCGAGCTTTACTTGCGTT-ACGTGTTACGGCGCC 593
Query 626 AAGGAGCATCTGAGTCGATACGCTTTCAAGAGCTCTTTGACTGATATTCCTCTCGTCTCC 685
|||||||||||||| ||||||| ||||||||| ||||| |||||||||||| ||||||||
Sbjct 594 AAGGAGCATCTGAGGCGATACGGTTTCAAGAGATCTTTAACTGATATTCCTATCGTCTCC 653
Query 686 CTCGTCAGATCTTTCCTTGTCATCTGTGTCTACTCT-CTATCCGATGCTCCTGCACTTTC 744
| | ||||||||||||||||||||||||||| | | || || || | |||||| || ||
Sbjct 654 GTTGCCAGATCTTTCCTTGTCATCTGTGTCTA-TTTACTCTCGGACGTTCCTGCCCTCTC 712
Query 745 GCATGGCCCTTACCTTGGAACTGTATCGCTGTGTTCTGTTGTTTCTGTTGTTCTTCTATC 804
||| || |||||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||
Sbjct 713 GCACGGTCCTTACCTTGGAACTGTATCTCTGTGTTCTGTAGTTTCGGTTCTTCTTCTGTC 772
Query 805 AGTAAAAGCTTGCGTTTTTACTGCAAATTCTCAACTTAACGACCAAGCCTCGTCCTCTCC 864
||| ||||||||| |||| |||| ||||||||||| ||| || ||||||||| ||||||
Sbjct 773 AGTTAAAGCTTGCCTTTTCACTGTTAATTCTCAACTCAACAACGAAGCCTCGTTCTCTCC 832
Query 865 GTCAAGGCAAAGACTCCATCTGAAAAAGTCTTGGGGGATGCCAGTTTTGTTCCTTTCATC 924
|| |||||| | ||||| ||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 833 ATCTAGGCAACGGCTCCACCTGAAGAAGTCGTGGGGGATGCCGGTTTTGTTCCTCTCATC 892
Query 925 TGTTGTTTTTGCTCTTGGTCATATGGTTGTTGCTTATAGAACAAGTTGCAGAGCTAGGAG 984
||| |||||||| |||||||||| |||||| ||||| || |||||||||||||| |||||
Sbjct 893 TGTGGTTTTTGCCCTTGGTCATACGGTTGTAGCTTACAGGACAAGTTGCAGAGCAAGGAG 952
Query 985 GAAACTCTTGTATCACAGAGTTGACCCTGAAGCTGTTCTTTCTTGCAAAAGTGTCTTCTC 1044
|||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 953 GAAAATTTTGTATCACAGAGTTGACCCTGAAGCTGTTCTTTCATGCAAAAGCATCTTCTC 1012
Query 1045 TGGTTACCAGAAAGTCCCACGTTCTCCAATTCCTTTGGTAGGAAAGGCCTCCAAGGTTGA 1104
||| ||||||||||||| || | || | |||| |||| || |||||||||||| ||||
Sbjct 1013 TGGCCACCAGAAAGTCCCGCGGGCACCCACTCCTGTGGTTGGCAAGGCCTCCAAGTTTGA 1072
Query 1105 TGGCGAGGCAAGACGAAAGCTGCATCCTTCAGTATCCAACGATGACGGAGAGCTACCTGC 1164
||| || ||||| ||||||| | | || || ||| |||||| |||||||| || |
Sbjct 1073 TGGAGAAGCAAGGCGAAAGC--C-T--TT--GTC-CCA-CGATGAAGGAGAGCTTCCAGT 1123
Query 1165 GAGATTGCTTGCTGATCTTGACAGCTTATTCATTACAGTCAGAGGGCTCACTGTGCATTA 1224
|||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||
Sbjct 1124 GAGATTGCTTGCTGATGTTGACAGTTTATTCATTACAATCCGAGGGCTCACTGTGCATTA 1183
Query 1225 CAAGATTTGCACACCTGCTTCTCCTCGCCACTCTATCTCCTCCTCA-GT--T-GAAGCCA 1280
||| |||| |||||| ||| ||||| || ||||||||||| | || | || ||||
Sbjct 1184 TAAGCTTTGTGCACCTGGTTCGCCTCGGCAGTCTATCTCCTCAA-ATGTCCTCGATGCCA 1242
Query 1281 ACTCTATGCTTA-A-TATGCCAGAGGCGATGGTGGGAAGGTTGAAGCTTGACAGGAATA- 1337
| |||| | ||| | || ||||||| | |||| |||||||||||| |||||||||| |
Sbjct 1243 ATTCTA-G-TTACAATACGCCAGAGACAATGGCAGGAAGGTTGAAGTTTGACAGGAA-AG 1299
Query 1338 TATTGAGCATGGTCACGAGAAA-CAAGC-TCAACCATCACCACCATAGGAGCTACAGCAG 1395
| | ||||||||| |||| ||| | ||| ||| | |||||||| | |||||||||||||
Sbjct 1300 TGTCGAGCATGGTTACGA-AAAGCCAGCATCATC-ATCACCAC-A--GGAGCTACAGCAG 1354
Query 1396 TCTGTTTAACAATTCTTCTTCCTTGCACGACCCTCTCCTTGATGGT-CTTCCTACTTCTC 1454
| |||||||||||||||| | | |||||||||||| ||||||||| || ||||||||||
Sbjct 1355 TTTGTTTAACAATTCTTCGT--T-GCACGACCCTCTTCTTGATGGTTCT-CCTACTTCTC 1410
Query 1455 CTCGTCTTTTCAAAGATATTCAGGAAG-AATCGTGCCGAGAGGATGGCATCAATGTGTCC 1513
||| |||||||||||| |||||||||| || || ||| ||||||| ||| ||| ||| |
Sbjct 1411 CTCTTCTTTTCAAAGAAATTCAGGAAGGAA-CGAGCCTAGAGGATAACATGAATATGTTC 1469
Query 1514 AATTTTGGTGCC-ACGGAACAGCAAGATGTTG-GTGGAAAC-GGCCAATTTGGTGTAGTG 1570
|||||||| || | ||| || || | ||| ||| ||| || || |||||||| ||
Sbjct 1470 AATTTTGGAGCTGA-GGAGCA--AA-AC-TTGAGTG-AAAGTGGTCAGTTTGGTGTGGTC 1523
Query 1571 TTGGTCCATGGATTTGGCGGAGGAGTGTTTTCTTGGAGACATGTGATGAGTTCTCTTGCC 1630
|||| ||||||||||| |||||||||||||||||||| ||||||||| |||| || ||
Sbjct 1524 CTGGTTCATGGATTTGGAGGAGGAGTGTTTTCTTGGAGGCATGTGATGGGTTCACTGGCT 1583
Query 1631 CATCAACTTGGCTGTGTTGTCACTGCATTTGATAGGCCTGGTTGGGGATTAACCGCCAGA 1690
|| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1584 CAGCAGCTTGGCTGTGTTGTCACTGCATTTGATAGGCCTGGTTGGGGATTAACAGCCAGG 1643
Query 1691 CCTCATAAAAAGGATTTGGAAGAAAGAGAGATGC-CAAACCCT-TACACTCTGGATAATC 1748
|| ||||| || ||||||||||||||| || ||| ||| || | ||||||| | | ||||
Sbjct 1644 CCACATAAGAATGATTTGGAAGAAAGACAGCTGCTCAATCCTTATACACTC-GAA-AATC 1701
Query 1749 AGGTAGACATGCTTCTTGCCTTT-TGCCACGAAATGGGATTTGCTTCTGTAGTCTTGGTT 1807
||||||| |||||| |||| ||| || | || ||||| ||| |||| ||||| || |||
Sbjct 1702 AGGTAGAGATGCTTATTGC-TTTCTGTTATGAGATGGGGTTTTCTTCAGTAGTATTTGTT 1760
Query 1808 GGCCATGATGATGGAGGTTTGCTTGCTCTCAAGGCTGCACAAAGATTGCTAGA-AACAAA 1866
|| ||||||||||||||| | ||||||||||| ||||||||||||||| || | ||||||
Sbjct 1761 GGTCATGATGATGGAGGTCTACTTGCTCTCAAAGCTGCACAAAGATTGATA-ACAACAAA 1819
Query 1867 AGATCCCATCAAAGTC------AAAGGAGTGGTTTTGCTTAATG-TAAGCTTGA-CGAGG 1918
||||||||||||||| |||||||| || ||||||||| | |||| | | |||
Sbjct 1820 CGATCCCATCAAAGTCGTGGTCAAAGGAGTTGTCTTGCTTAATACTG-GCTT-ATCAAGG 1877
Query 1919 GAAGTAGTGCCAGCTTTTGCAAGAATACTTCTGCACACATCACTAGGAAAGAAACACCTT 1978
|||||||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct 1878 GAAGTAGTTCCAGCTTTTGCAAGGATACTTCTGCACACCTCACTAGGGAAGAAGCACCTC 1937
Query 1979 GTTCGTCCGCTTTTACGCACTGAAATAGCTCAGGTGGTGAATCGCAGAGCTTGGTATGAT 2038
||||| || |||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 1938 GTTCGCCCTCTTTTACGCACTGAGATAGCTCAGGTGGTGAATCGCCGCGCTTGGTATGAT 1997
Query 2039 CCTGCCAAGATGACAACCGATGTCTTAAGGCTATACAAGGCACCACTTCATGTGGAAGGC 2098
|||||||||||||| || || ||| |||||||||||||||| ||||| || || ||||||
Sbjct 1998 CCTGCCAAGATGACTACAGACGTCCTAAGGCTATACAAGGCCCCACTACACGTAGAAGGC 2057
Query 2099 TGGGATGAGGCACTT-CACGAGATAGGCAGACTCTCATCCGAGATGGTGCTTCCAACTCA 2157
|||||||||||| || || |||||||| ||||||||||| |||||||||||| || ||||
Sbjct 2058 TGGGATGAGGCA-TTACATGAGATAGGTAGACTCTCATCTGAGATGGTGCTTGCACCTCA 2116
Query 2158 AAATGCAT-TGTCACTTCTCAAGGCAGTGGAAAACTTACCAGTATTAGTCGTTGCTGGAG 2216
||||||| | || ||||| ||||| ||||||||| | ||||| ||||| ||||||| |
Sbjct 2117 AAATGCAACT-TCGCTTCTGAAGGCTGTGGAAAACCTGCCAGTGCTAGTCATTGCTGGGG 2175
Query 2217 CCGAAGACGCACTTGTTCCCCTCAAGTCCTCCCAAGTCA-TGGCTTCAAAACT-CGAAAA 2274
|||||||||| ||||| || | ||||||||||||| || ||||||| ||||| | |||
Sbjct 2176 CCGAAGACGCCCTTGTGCCATTGAAGTCCTCCCAAG-CAATGGCTTCTAAACTTCTAAA- 2233
Query 2275 CTCTAGGCTAGTAGCAATCTCAGGATGCGGACATCTGCCACATGAGGAGTGTCCCAAGGC 2334
|||||| || ||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 2234 CTCTAGACTGGTAGCAATCTCAGGATGTGGGCATCTACCACACGAGGAGTGTCCCAAGGC 2293
Query 2335 ACTTCTTGCAGCCATGTGCCCATTCATAAGC-AGACTTGTATTTag 2379
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Sbjct 2294 GCTTCTTGCAGCCATGTCCCCGTTCATCA-CTAGACTTGTACTTAG 2338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101358141945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5