BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80290.2
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340192 jgi|Araly1|340192|fgenesh1_pg.C_scaffold_2002291 1448 0.0
> Ahg340192 jgi|Araly1|340192|fgenesh1_pg.C_scaffold_2002291
Length=1158
Score = 1448 bits (784), Expect = 0.0
Identities = 998/1097 (91%), Gaps = 31/1097 (3%)
Strand=Plus/Plus
Query 1 AACTCCAACTAGTCAATCGGAATTCCAAATCTCT-AGAC-GGAGATTCTGATGCCGGAAT 58
||| |||||||||||||||||||| ||| ||||| | | ||||| | ||||||||||
Sbjct 66 AACACCAACTAGTCAATCGGAATTGCAACTCTCTCCGTCTCGAGATCCCGATGCCGGAAC 125
Query 59 GCCATCA------G---CTTCCGAGGCTGATATGGGAGTCAAATCG--GTGAGGTTCTCT 107
|||||| | ||||||||| |||||||||||| | | | || ||||||| |
Sbjct 126 ACCATCAGCTCCTGCTTCTTCCGAGGTTGATATGGGAGT-TACTAGAAGT-AGGTTCTAT 183
Query 108 ATCTGGTTCCT-TT--TCGTTGTTACGGATCTCGTGTTTTGTCGCACGCTCTCAGGGGAT 164
||||||||||| || || |||||||||||||||||| || ||||||||||||| ||||
Sbjct 184 ATCTGGTTCCTGTTCCTCTTTGTTACGGATCTCGTGTCCTGCCGCACGCTCTCAGTGGAT 243
Query 165 CCAGATCCATGTGATGCAACGAACCAGAGAGAATTTCAAAAACTCAGATCGGATCAGATC 224
|| ||||| |||||| ||| |||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 244 CCGGATCCGTGTGATTCAATGAACCAGAGAGACTTTCAGAAACTTAGATCGGATCAAATC 303
Query 225 ACCGTTCTAATCAATGGTTACTCAGAATACCGGATTCCTCTTCTGCAAACCATCGTGGCC 284
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 304 ACCGTTCTAATCAACGGTTACTCTGAATACCGGATTCCTCTTCTCCAAACCATCGTGGCC 363
Query 285 TCTTATTCTTCATCCTCGATCGTATCCTCCATCTTAGTCCTATGGGGTAACCCTAGCACA 344
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 364 TCGTATTCTTCATCCTCAATCGTATCATCCATCTTAGTCCTATGGGGTAACCCTAGCACA 423
Query 345 CCTGATCAACTACTTGACCAGTTGTATCAGAATCTGACTCAGTATTCGCCTGGTTCTGCT 404
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 424 CCTGATCAACTACTTGACCACTTGTATCAGAATCTCACTCAGTACTCGCCTGGTTCTGCT 483
Query 405 TCCATCTCTCTAATTCAGCAATCTTCGAGCAGCCTCAACGCTAGATTCCTCCCTCGTTCC 464
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 484 TCCATCTCTCTAATTCAGCAATCTTCTAGCAGCCTCAACGCCAGATTCCTCCCTCGTTCC 543
Query 465 TCTGTAGACACTCGTGCTGTTTTGATATGTGATGATGACGTCGAGATTGACCAGAGATCG 524
||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||
Sbjct 544 TCTGTAGACACTCGTGCTGTTCTGATATGTGATGATGATGTCGAGATTGATCGGAGATCG 603
Query 525 TTGGAGTTTGCGTTTTCAGTGTGGAAGTCGAATCCTGATCGCCTTGTAGGAACGTTTGTG 584
||||| || || ||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 604 TTGGAATTCGCATTTTCTGTGTGGAAGTCCAATCCTGATCATCTTGTAGGAACGTTTGTG 663
Query 585 AGGTCACACGGTTTCGATTTGCAGGGGAAAGAGTGGATATACACTGTTCATCCAGATAAA 644
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 664 AGGTCACACGGTTTCGATTTGCAGGGCAAAGAGTGGATTTACACTGTGCATCCAGATAAA 723
Query 645 TACTCGATTGTGTTGACCAAGTTCATGATGATGAAACAGGATTATCTGTT-TGAGTATAG 703
||||| || ||| ||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 724 TACTCCATCGTGCTGACCAAGTTCATGATGATGAAACAAGATTATCT-TTATGAGTATAG 782
Query 704 CTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCAAATGCGTAACTG 763
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 783 CTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCGAATGCGTAACTG 842
Query 764 CGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGT 902
Query 824 TGGAGCTGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGTA---G-A----A 875
|||||| |||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 903 TGGAGCAGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGAACAAGTAGTTGA 962
Query 876 -GAGAGAGTAAGAGACGTGGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGG 934
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAGAGAGTAAGAGATGCAGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGG 1022
Query 935 GAATTGCATTAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGG 994
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GAAGTGCATCAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGG 1082
Query 995 TAAAGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGGCAAA-CTTGTCT 1053
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 1083 TAAGGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGG-AAAGCTTGTGT 1141
Query 1054 TTTGTGATCGAGATTGA 1070
||||||| |||||||||
Sbjct 1142 TTTGTGACCGAGATTGA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5