BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80290.2 Length=1070 Score E Sequences producing significant alignments: (Bits) Value Ahg340192 jgi|Araly1|340192|fgenesh1_pg.C_scaffold_2002291 1448 0.0 > Ahg340192 jgi|Araly1|340192|fgenesh1_pg.C_scaffold_2002291 Length=1158 Score = 1448 bits (784), Expect = 0.0 Identities = 998/1097 (91%), Gaps = 31/1097 (3%) Strand=Plus/Plus Query 1 AACTCCAACTAGTCAATCGGAATTCCAAATCTCT-AGAC-GGAGATTCTGATGCCGGAAT 58 ||| |||||||||||||||||||| ||| ||||| | | ||||| | |||||||||| Sbjct 66 AACACCAACTAGTCAATCGGAATTGCAACTCTCTCCGTCTCGAGATCCCGATGCCGGAAC 125 Query 59 GCCATCA------G---CTTCCGAGGCTGATATGGGAGTCAAATCG--GTGAGGTTCTCT 107 |||||| | ||||||||| |||||||||||| | | | || ||||||| | Sbjct 126 ACCATCAGCTCCTGCTTCTTCCGAGGTTGATATGGGAGT-TACTAGAAGT-AGGTTCTAT 183 Query 108 ATCTGGTTCCT-TT--TCGTTGTTACGGATCTCGTGTTTTGTCGCACGCTCTCAGGGGAT 164 ||||||||||| || || |||||||||||||||||| || ||||||||||||| |||| Sbjct 184 ATCTGGTTCCTGTTCCTCTTTGTTACGGATCTCGTGTCCTGCCGCACGCTCTCAGTGGAT 243 Query 165 CCAGATCCATGTGATGCAACGAACCAGAGAGAATTTCAAAAACTCAGATCGGATCAGATC 224 || ||||| |||||| ||| |||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 244 CCGGATCCGTGTGATTCAATGAACCAGAGAGACTTTCAGAAACTTAGATCGGATCAAATC 303 Query 225 ACCGTTCTAATCAATGGTTACTCAGAATACCGGATTCCTCTTCTGCAAACCATCGTGGCC 284 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 304 ACCGTTCTAATCAACGGTTACTCTGAATACCGGATTCCTCTTCTCCAAACCATCGTGGCC 363 Query 285 TCTTATTCTTCATCCTCGATCGTATCCTCCATCTTAGTCCTATGGGGTAACCCTAGCACA 344 || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 364 TCGTATTCTTCATCCTCAATCGTATCATCCATCTTAGTCCTATGGGGTAACCCTAGCACA 423 Query 345 CCTGATCAACTACTTGACCAGTTGTATCAGAATCTGACTCAGTATTCGCCTGGTTCTGCT 404 |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct 424 CCTGATCAACTACTTGACCACTTGTATCAGAATCTCACTCAGTACTCGCCTGGTTCTGCT 483 Query 405 TCCATCTCTCTAATTCAGCAATCTTCGAGCAGCCTCAACGCTAGATTCCTCCCTCGTTCC 464 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 484 TCCATCTCTCTAATTCAGCAATCTTCTAGCAGCCTCAACGCCAGATTCCTCCCTCGTTCC 543 Query 465 TCTGTAGACACTCGTGCTGTTTTGATATGTGATGATGACGTCGAGATTGACCAGAGATCG 524 ||||||||||||||||||||| |||||||||||||||| ||||||||||| | ||||||| Sbjct 544 TCTGTAGACACTCGTGCTGTTCTGATATGTGATGATGATGTCGAGATTGATCGGAGATCG 603 Query 525 TTGGAGTTTGCGTTTTCAGTGTGGAAGTCGAATCCTGATCGCCTTGTAGGAACGTTTGTG 584 ||||| || || ||||| ||||||||||| |||||||||| |||||||||||||||||| Sbjct 604 TTGGAATTCGCATTTTCTGTGTGGAAGTCCAATCCTGATCATCTTGTAGGAACGTTTGTG 663 Query 585 AGGTCACACGGTTTCGATTTGCAGGGGAAAGAGTGGATATACACTGTTCATCCAGATAAA 644 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 664 AGGTCACACGGTTTCGATTTGCAGGGCAAAGAGTGGATTTACACTGTGCATCCAGATAAA 723 Query 645 TACTCGATTGTGTTGACCAAGTTCATGATGATGAAACAGGATTATCTGTT-TGAGTATAG 703 ||||| || ||| ||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 724 TACTCCATCGTGCTGACCAAGTTCATGATGATGAAACAAGATTATCT-TTATGAGTATAG 782 Query 704 CTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCAAATGCGTAACTG 763 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 783 CTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCGAATGCGTAACTG 842 Query 764 CGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGT 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 843 CGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGT 902 Query 824 TGGAGCTGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGTA---G-A----A 875 |||||| |||||||||||||||||||||||||||||||||||||||| | | | | Sbjct 903 TGGAGCAGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGAACAAGTAGTTGA 962 Query 876 -GAGAGAGTAAGAGACGTGGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGG 934 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 963 TGAGAGAGTAAGAGATGCAGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGG 1022 Query 935 GAATTGCATTAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGG 994 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 GAAGTGCATCAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGG 1082 Query 995 TAAAGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGGCAAA-CTTGTCT 1053 ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 1083 TAAGGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGG-AAAGCTTGTGT 1141 Query 1054 TTTGTGATCGAGATTGA 1070 ||||||| ||||||||| Sbjct 1142 TTTGTGACCGAGATTGA 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39838448265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5