BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80310.1
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927476 jgi|Araly1|927476|scaffold_203037.1 2121 0.0
> Ahg927476 jgi|Araly1|927476|scaffold_203037.1
Length=1422
Score = 2121 bits (1148), Expect = 0.0
Identities = 1306/1383 (94%), Gaps = 8/1383 (1%)
Strand=Plus/Plus
Query 319 ACTTTAGATCCAATCATGGAGACAACTACAACTCCTCTGCTCCCCGGTGATCGCAGCAGA 378
||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 6 ACTGTAGATCCAATCATGGAGACAACTACCACTCCTCTGCTCCCCGGTGATCGTGGCCGA 65
Query 379 TGCGGGTGGCTCCGTCGCCGTCTCCGCCTCAAAAACCCTCTTTCTTCTGAACTCTCCGGC 438
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 66 TGCGGGTGGCTCCGCCGTCGTCTCCGCCTCAAAAACCCTCTCTCTTCTGAACTCTCCGGC 125
Query 439 GCTGTCGGTGATCTCGGCACCTTCATCCCCATCGTCCTTACACTAACTCTAGTCTCCAAT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GCTGTCGGTGATCTCGGCACCTTCATCCCCATCGTCCTTACACTAACTCTAGTCTCCAAT 185
Query 499 CTTGATCTCTCCACCACTCTCATCTTCACTGGTTTCTACAACATCGCCACCGGTCTCCTC 558
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 186 CTCGATCTCTCCACCACTCTCATCTTCACAGGTTTCTACAACATCGCCACCGGTCTCCTC 245
Query 559 TTTGACATCCCTATGCCCGTCCAGCCCATGAAATCCATCGCCGCTGTCGCTGTCTCCGAA 618
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 246 TTCGACATCCCTATGCCCGTCCAGCCCATGAAATCCATCGCCGCCGTCGCTGTCTCCGAA 305
Query 619 TCCCCGCATCTAACTCCTTCTCAGATTGCCGCCGCTGGTGCATCCACTGCCGCCACGCTC 678
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 306 TCCCCACATCTAACTCCTTCTCAGATTGCCGCCGCTGGAGCATCCACTGCCGCAACGCTC 365
Query 679 CTCCTCCTTGGCGCCACCGGAGCTATGTCTTTCCTCTACAACATCATCCCTCTCCCAGTT 738
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 366 CTCCTCCTTGGCGCCACCGGAGCCATGTCTTTCCTCTACAACCTCATCCCTCTCCCAGTC 425
Query 739 GTACGCGGCGTCCAGCTTTCTCAAGGTCTTCAGTTCGCCTTCACCGCCATCAAATACGTC 798
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 426 GTACGCGGCGTCCAGCTCTCTCAGGGTCTTCAGTTCGCCTTCACCGCCATCAAATACGTC 485
Query 799 AGGTTTAATTACGATACTGCCACTCTCAAACCCTCTTCTTCTCCTCGTATTTGGCTTGGC 858
|||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 486 AGGTTTAATTACGACGCTGCTACTCTCAAACCCTCTTCTTCTCCTCGTACATGGCTTGGC 545
Query 859 CTCGACGGCCTTATCTTGGCTCTAGCTGCTCTGCTCTTCATCATTTTGTCCACCGGCTCT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CTCGACGGCCTTATCTTGGCTCTAGCTGCTCTGCTCTTCATCATTTTGTCCACCGGCTCT 605
Query 919 GGCAACGACAGAGAAGCTG-AAGATGGAGATCTCGCCGAGACTTCCAGCAACGAAAGCCA 977
|||||||||||||| || ||||||||||| | |||||||| || ||||||||||||||
Sbjct 606 GGCAACGACAGAGAC-CTCCAAGATGGAGATTTTGCCGAGACCTCAAGCAACGAAAGCCA 664
Query 978 GTCTCGCCGGAGGAGACTGCGTCTTCTGTCTTCGATTCCATCTGCGCTGATCGTGTTCGC 1037
|||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 665 GTCTCGCCGGAGAAGACTGCGTCTTCTGTCTTCAATTCCATCAGCGCTAATCGTGTTCGC 724
Query 1038 -ACTCGGGTTAGTGCTCTGTTTCATACGTGATCCATCCATTTTCAAAGACCTTAAATTCG 1096
| ||||||| || ||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 725 TA-TCGGGTTGGTTCTCTGTTTCATTCGCGATCCGTCCATTTTCAAAGACCTTAAATTCG 783
Query 1097 GTCCCTCGAAGTTCCACATTCTGAGAATCAGTTGGGATGATTGGAAAATCGGGTTTCTGA 1156
|||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 784 GTCCGTCGAAATTCCACATTCTGAGAATCACTTGGGATGATTGGAAAATCGGGTTTGTAA 843
Query 1157 GGGCGGCGATTCCTCAGATTCCACTCTCTGTACTGAACTCAGTGATCGCAGTTTGTAAAT 1216
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 844 GGGCGGCTATTCCTCAGATTCCACTCTCTGTACTGAACTCAGTGATCGCAGTTTGCAAAC 903
Query 1217 TATCCAATGACTTGTTTGACAAGGAACTCTCTGCGACTACAGTCTCCATCAGCGTTGGGG 1276
||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 904 TATCCAACGACTTGTTCGACAAGGAACTCTCCGCGACTACAGTGTCCATCAGCGTTGGGG 963
Query 1277 TGATGAACTTAATAGGGTGCTGGTTTGGCGCTATGCCCGTCTGTCACGGTGCTGGTGGGT 1336
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 964 TGATGAACTTAATCGGGTGCTGGTTTGGCGCTATGCCTGTCTGTCACGGTGCTGGCGGGT 1023
Query 1337 TAGCTGGTCAGTATC-GGTTTGGGGCAAGGAGTGGATTATCCGTTATTTTTCTCGGAATC 1395
||||||| ||||| | |||| ||||||||||||||||| || ||||| |||||||| |||
Sbjct 1024 TAGCTGGGCAGTA-CAGGTTCGGGGCAAGGAGTGGATTGTCGGTTATCTTTCTCGGGATC 1082
Query 1396 GGGAAACTGATTGTGGGTCTGGTGTTTGGAAACTCCTTTGTAAGGATTCTGAGTCAGTTT 1455
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1083 GGGAAACTGATTGTGGGTCTGGTGTTTGGAAACTCGTTTGTAAGGATTCTGAGCCAGTTT 1142
Query 1456 CCGATTGGAATTTTAGGGGTTCTGTTGCTATTCGCGGGAATCGAACTGGCAATGGCTTCC 1515
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1143 CCGATTGGAATTTTGGGGGTTCTGTTGCTATTCGCGGGGATCGAACTGGCAATGGCTTCC 1202
Query 1516 AAAGACATGAACTCCAAAGAAGATTCCTTCATCATGCTGGTCTGCGCCGCTGTGTCGATG 1575
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1203 AAAGACATGAACACCAAAGAAGATTCCTTCATCATGTTGGTCTGCGCCGCTGTGTCGATG 1262
Query 1576 ACTGGCTCGAGTGCCGCCTTAGGATTTGGTTGTGGAGTTGTTCTTTACTTGTTACTGAAG 1635
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1263 ACTGGCTCGAGTGCCGCCTTAGGATTTGGGTGTGGAGTTGTTCTTTACTTGTTACTGAAG 1322
Query 1636 CTAAGAACGTTAGACTGTTCTTCAGTAACTCTGTTTTCCCGGTCAAGTGATG-AGTCGCA 1694
||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 1323 CTAAGAACGTTAGACTGTTCTTCTGTAACTCTGTTTTCCCGGTCAAGTGATGGA-TCGCA 1381
Query 1695 GGT 1697
|||
Sbjct 1382 GGT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790458195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5