BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80320.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909682 jgi|Araly1|909682|Al_scaffold_0002_2763 1544 0.0
> Ahg909682 jgi|Araly1|909682|Al_scaffold_0002_2763
Length=963
Score = 1544 bits (836), Expect = 0.0
Identities = 922/964 (96%), Gaps = 4/964 (0%)
Strand=Plus/Plus
Query 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCAGCGATAAACTAGTG 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCCGCGATAAACTAGTG 60
Query 61 CGAGGCACGAGTCACTGGATCACGACCAGGGACGATGTCAGAAGAGCCATGGAGGGGCAG 120
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 61 CGAGGCACGAGTCACTGGATCACGACCAGGGAAAATGTAAGAAGAGCCATGGAGGAGCAG 120
Query 121 GGTTGGTTTGTGGCAGAGTTCAGTGGCGTCTCATCTGACCTCAGGGACAACTTGCTGGCC 180
|||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 121 GGTTGGTTTGTGGCAGAGTTCAATGGCGTCTCATGTGACCTCAGGGACAAGTTGCTGGCC 180
Query 181 GGCATGAAGGAGATGTATTATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCATGAAGGAGATGTATGATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240
Query 241 GCGTCCCATGGCTACATGTCTATGGTAGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCCTCCCATGGCTACATGTCTATGGTTGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300
Query 301 ATCGATTATGCAACCGAGCTTCAAGCTTGCAAAGACTTCTCTAAACTACTCTGGCCACAG 360
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 301 ATCGACTATGCAACCGAGCTCCAAGCTTGCAAAGATTTCTCTAAACTACTCTGGCCACAA 360
Query 361 GGAAACGATCCCTTCTGTCAAACCACACATATGTATGCAATGACAATGGCGGAGCTAGAC 420
|||||||||||||||||||||||||| ||||||||||||| | ||||||| || ||||||
Sbjct 361 GGAAACGATCCCTTCTGTCAAACCACGCATATGTATGCAACGGCAATGGCAGAACTAGAC 420
Query 421 CAGACGGTGATGAGGATGTTGTATGAAAGCTATGGAATGGATGAGAAGAAGCATTCTGTG 480
||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 421 CAGGCGGTGATGAGGATGCTGTTTGAGAGCTATGGAATGGATGAGAAGAAGCATTCTGCG 480
Query 481 AGTCACTCCGAGTCAACTCGATACCTGTTGAGGATGCTGAGTTACAGGAGACAGCAAAAC 540
||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 481 AGTCATTCCGAGTCAACTCGATACCTGTTGAGGATGCTGAGTTACCGGAGACAGGAAAAC 540
Query 541 GGTGAAGCAAACACTGG-TTTCGTGTCACACACTGATAAGAGCTTCATGAGTATCCTCCA 599
||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGAAGCAAACACTGGCTTT-GTATCACACACTGATAAGAGCTTCATGAGTATCCTCCA 599
Query 600 CCAGAACCACGTCGGAGGTCTCCAGTTGAAAACCATGACCGGCCAATGGGTCGGGTTTAA 659
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 600 CCAGAACCACGTCGGAGGTCTCCAGCTGAAAACCATGACCGGTCAATGGGTCGGGTTTAA 659
Query 660 CCCGTCCCCAACAAGATTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAACGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCCGTCCCCAACAAGATTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAACGA 719
Query 720 TAGGATAAAGGCATGTTACCACAAGGTAGTGATGAGTGCAGATGAGATTCGATACTCTTT 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TAGGATAAAGGCATGTTACCACAAGGTAGTGATGAGCGCAGATGAGATTCGATACTCTTT 779
Query 780 AGGGTTTTTCTCCTTCCACAAAGGAACGATCCGTACGCCGGAGGAGCTCGTCGATGACCA 839
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 780 TGGGTTTTTCTCCTTCCACAAAGGAACCATTCGTACGCCGGAGGAGCTCGTCGATGACCA 839
Query 840 ACATCCCCTCCGCTACAATCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATCCCCTCCGCTACAGTCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTA 899
Query 900 CATCAATTCTCTCAAGAAATCCAGCGAAGATCTTCTCCAGATCTACTGCGGCGTCACA-C 958
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 900 CCTCAATTCTCTCAAGAAATCCAGCGAGGATCTTCTCCAGATCTACTGCGGCGTCA-ATC 958
Query 959 CCTA 962
||||
Sbjct 959 CCTA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5