BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80320.1 Length=963 Score E Sequences producing significant alignments: (Bits) Value Ahg909682 jgi|Araly1|909682|Al_scaffold_0002_2763 1544 0.0 > Ahg909682 jgi|Araly1|909682|Al_scaffold_0002_2763 Length=963 Score = 1544 bits (836), Expect = 0.0 Identities = 922/964 (96%), Gaps = 4/964 (0%) Strand=Plus/Plus Query 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCAGCGATAAACTAGTG 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGGACTCACATGAAGAGCAATGCTTACCTATCCTCGACTTCTCCCGCGATAAACTAGTG 60 Query 61 CGAGGCACGAGTCACTGGATCACGACCAGGGACGATGTCAGAAGAGCCATGGAGGGGCAG 120 |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| Sbjct 61 CGAGGCACGAGTCACTGGATCACGACCAGGGAAAATGTAAGAAGAGCCATGGAGGAGCAG 120 Query 121 GGTTGGTTTGTGGCAGAGTTCAGTGGCGTCTCATCTGACCTCAGGGACAACTTGCTGGCC 180 |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| Sbjct 121 GGTTGGTTTGTGGCAGAGTTCAATGGCGTCTCATGTGACCTCAGGGACAAGTTGCTGGCC 180 Query 181 GGCATGAAGGAGATGTATTATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGCATGAAGGAGATGTATGATCTCCCAGACCAAATCAAAATCAAGAACGAGAACCACAAG 240 Query 241 GCGTCCCATGGCTACATGTCTATGGTAGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 GCCTCCCATGGCTACATGTCTATGGTTGTTGACGATTACCGGATCCATGAGAGCTTGGGG 300 Query 301 ATCGATTATGCAACCGAGCTTCAAGCTTGCAAAGACTTCTCTAAACTACTCTGGCCACAG 360 ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 301 ATCGACTATGCAACCGAGCTCCAAGCTTGCAAAGATTTCTCTAAACTACTCTGGCCACAA 360 Query 361 GGAAACGATCCCTTCTGTCAAACCACACATATGTATGCAATGACAATGGCGGAGCTAGAC 420 |||||||||||||||||||||||||| ||||||||||||| | ||||||| || |||||| Sbjct 361 GGAAACGATCCCTTCTGTCAAACCACGCATATGTATGCAACGGCAATGGCAGAACTAGAC 420 Query 421 CAGACGGTGATGAGGATGTTGTATGAAAGCTATGGAATGGATGAGAAGAAGCATTCTGTG 480 ||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| | Sbjct 421 CAGGCGGTGATGAGGATGCTGTTTGAGAGCTATGGAATGGATGAGAAGAAGCATTCTGCG 480 Query 481 AGTCACTCCGAGTCAACTCGATACCTGTTGAGGATGCTGAGTTACAGGAGACAGCAAAAC 540 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 481 AGTCATTCCGAGTCAACTCGATACCTGTTGAGGATGCTGAGTTACCGGAGACAGGAAAAC 540 Query 541 GGTGAAGCAAACACTGG-TTTCGTGTCACACACTGATAAGAGCTTCATGAGTATCCTCCA 599 ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 541 GGTGAAGCAAACACTGGCTTT-GTATCACACACTGATAAGAGCTTCATGAGTATCCTCCA 599 Query 600 CCAGAACCACGTCGGAGGTCTCCAGTTGAAAACCATGACCGGCCAATGGGTCGGGTTTAA 659 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 600 CCAGAACCACGTCGGAGGTCTCCAGCTGAAAACCATGACCGGTCAATGGGTCGGGTTTAA 659 Query 660 CCCGTCCCCAACAAGATTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAACGA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 CCCGTCCCCAACAAGATTCGTCGTTCTCTCCGGCATGGGTCTCACGGCGTGGAGTAACGA 719 Query 720 TAGGATAAAGGCATGTTACCACAAGGTAGTGATGAGTGCAGATGAGATTCGATACTCTTT 779 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 720 TAGGATAAAGGCATGTTACCACAAGGTAGTGATGAGCGCAGATGAGATTCGATACTCTTT 779 Query 780 AGGGTTTTTCTCCTTCCACAAAGGAACGATCCGTACGCCGGAGGAGCTCGTCGATGACCA 839 |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 780 TGGGTTTTTCTCCTTCCACAAAGGAACCATTCGTACGCCGGAGGAGCTCGTCGATGACCA 839 Query 840 ACATCCCCTCCGCTACAATCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTA 899 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ACATCCCCTCCGCTACAGTCCTTTCGAGCACGACGGCCTCTTACGCTTCTACGAGTCGTA 899 Query 900 CATCAATTCTCTCAAGAAATCCAGCGAAGATCTTCTCCAGATCTACTGCGGCGTCACA-C 958 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | Sbjct 900 CCTCAATTCTCTCAAGAAATCCAGCGAGGATCTTCTCCAGATCTACTGCGGCGTCA-ATC 958 Query 959 CCTA 962 |||| Sbjct 959 CCTA 962 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35759296146 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5