BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80330.1 Length=1068 Score E Sequences producing significant alignments: (Bits) Value Ahg316927 jgi|Araly1|316927|fgenesh1_pm.C_scaffold_2001960 1568 0.0 > Ahg316927 jgi|Araly1|316927|fgenesh1_pm.C_scaffold_2001960 Length=1068 Score = 1568 bits (849), Expect = 0.0 Identities = 998/1071 (93%), Gaps = 6/1071 (1%) Strand=Plus/Plus Query 1 ATGCCTTCACTAGCAGAAGAGATATGTATTGGTAACTTAGGCAGTCTCCAAACACTCCCC 60 ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGACTTCATTAGCAGAAGAGATATGTATTGGAAACTTAGGCAGTCTCCAAACACTCCCC 60 Query 61 GAGTCGTTCACCTGGAAACTCACAGCCGCCGACTCCCTTCTGCGTCCCTCCTCCGCCGTC 120 || |||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||| Sbjct 61 GACTCGTTCACCTGGAAACTCACCGCCGCCGACTCCGTTCTGCCTCCCTCCTCTGCCGTC 120 Query 121 TCATTCGACG--CAGTGGAAGAGTCCATTCCTGTGATCGACCTCTCTAATCCTGACGTTA 178 || || | | ||||||||||||||||||| |||||||||||||| || ||||||| | Sbjct 121 TC-CTC-AGGTACAGTGGAAGAGTCCATTCCGGTGATCGACCTCTCCGATTCTGACGTCA 178 Query 179 CCACCCTCATTGGAGATGCCTCCAAAACATGGGGAGCGTTTCAGATAGCCAACCACGGGA 238 |||| ||||| ||| |||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 179 CCACTCTCATAGGAAATGCGTGTAAAACGTGGGGAGCGTTTCAGATAGCCAACCACGGGA 238 Query 239 TTTCTCAGAAGCTTCTCGATGATATCGAGTCTCTGTCCAAAACCCTATTCGACATGCCGT 298 ||||||||||||| ||||| |||||||||||||||||||||||||| || || ||||||| Sbjct 239 TTTCTCAGAAGCTCCTCGACGATATCGAGTCTCTGTCCAAAACCCTTTTTGATATGCCGT 298 Query 299 CAGAGAGGAAGCTTGAAGCGGCTTCCTCCGATAAAGGAGTTAGTGGCTACGGAGAACCTC 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CAGAGAGGAAGCTTGAAGCGGCTTCCTCCGATAAAGGAGTTAGTGGCTACGGAGAACCTC 358 Query 359 GAATCTCCCCCTTTTTCGAGAAGAAAATGTGGTCTGAAGGGTTTACTATTGCCGATGACT 418 ||||||| ||||||||||||||||||||||||||||||||||| || || || |||| || Sbjct 359 GAATCTCTCCCTTTTTCGAGAAGAAAATGTGGTCTGAAGGGTTCACGATAGCGGATGCCT 418 Query 419 CCTACCGCAACCATTTCAATACTCTTTGGCCTCATGATCACACCAAGTACTGCGGTATAA 478 |||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||| Sbjct 419 CCTATCGCAACCATTTCATTTCTCTTTGGCCTCATGATCACACCAAGTACTGCGGAATAA 478 Query 479 TCCAAGAATACGTGGACGAAATGGAAAAATTAGCAAGCAGACTTCTGTATTGCATATTAG 538 | ||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||| Sbjct 479 TGGAAGAATACGTGGACGAAATGGAAAAATTAGCGAGCAAACTTGTGTCTTGCATATTAG 538 Query 539 GCTCACTTGGTGTCACCGTGGAAGACATTGAATGGGCTCACAAGCTAGAGAAATCTGGAT 598 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 539 GCTCACTTGGTGTCACCGTGGAAGACATTGGATGGGCTCACAAGCTAGAGAAATCTGGAT 598 Query 599 CAAAAGTGGGCAGAGGCGCCATACGACTAAACCACTACCCGGTTTGTCCTGAACCAGAAC 658 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 599 CAAAAGTGGGCCGAGGCGCCATACGACTAAACCATTACCCGGTTTGTCCTGAACCAGAAC 658 Query 659 GAGCCATGGGTCTAGCCGCTCATACAGACTCCACTATCCTAACCATTCTGCACCAGAGCA 718 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 659 GAGCCATGGGTTTAGCCGCTCATACAGATTCCACTATCCTAACCATTCTGCACCAGAGCA 718 Query 719 ACACGGGAGGGCTACAAGTGTTCAGGGAAGAGTCCGGTTGGGTCACGGTTGAGCCGGCTC 778 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || Sbjct 719 ACACGGGAGGGCTACAAGTGTTCAGGGAAGAGTCCGGTTGGGTTACGGTTGAGCCAGTTC 778 Query 779 CTGGTGTCCTCGTGGTCAACATTGGTGATCTCTTTCACATCTTATCGAACGGGAAAATCC 838 |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct 779 CTGGTGTCCTCGTGGTCAACATGGGCGATCTCTTTCACATCTTATCAAACGGGAAAATCC 838 Query 839 CAAGCGTGGTTCATCGAGCCAAAGTTAACCATACTCGGTCAAGAATTTCGATTGCGTACT 898 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 839 CAAGCGTGGTTCACCGAGCCAAAGTCAACCATACTCGGTCAAGAATTTCGATTGCGTACT 898 Query 899 TATGGGGTGGTCCAGCTGGTGATGTGCAAATCGCACCTATCTCTAAGTTAACCGGTCCGG 958 | |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| Sbjct 899 TGTGGGGTGGTCCAGCTGGTGAAGTGCAAATCGCACCTATATCTAAGTTAATCGGTCCGG 958 Query 959 CTGAACCGTCTCTTTACCGGTCAATTACATGGAAAGAGTATCTCCAAATAAAGTATGAGG 1018 |||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||| Sbjct 959 TTGAACCGTCTCTATACCGATCAATCACATGGAAGGAGTATCTCCAAATAAAGTACGAGG 1018 Query 1019 TTTTCGACAAGGCCAT-GGACGCAATTAGGGTCGTTAATCCCACCAATTAA 1068 ||||||||||||| || |||||||||||||||| ||||||||||||||||| Sbjct 1019 TTTTCGACAAGGC-ATTGGACGCAATTAGGGTCATTAATCCCACCAATTAA 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39762202431 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5