BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80330.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316927 jgi|Araly1|316927|fgenesh1_pm.C_scaffold_2001960 1568 0.0
> Ahg316927 jgi|Araly1|316927|fgenesh1_pm.C_scaffold_2001960
Length=1068
Score = 1568 bits (849), Expect = 0.0
Identities = 998/1071 (93%), Gaps = 6/1071 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCACTAGCAGAAGAGATATGTATTGGTAACTTAGGCAGTCTCCAAACACTCCCC 60
||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGACTTCATTAGCAGAAGAGATATGTATTGGAAACTTAGGCAGTCTCCAAACACTCCCC 60
Query 61 GAGTCGTTCACCTGGAAACTCACAGCCGCCGACTCCCTTCTGCGTCCCTCCTCCGCCGTC 120
|| |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||
Sbjct 61 GACTCGTTCACCTGGAAACTCACCGCCGCCGACTCCGTTCTGCCTCCCTCCTCTGCCGTC 120
Query 121 TCATTCGACG--CAGTGGAAGAGTCCATTCCTGTGATCGACCTCTCTAATCCTGACGTTA 178
|| || | | ||||||||||||||||||| |||||||||||||| || ||||||| |
Sbjct 121 TC-CTC-AGGTACAGTGGAAGAGTCCATTCCGGTGATCGACCTCTCCGATTCTGACGTCA 178
Query 179 CCACCCTCATTGGAGATGCCTCCAAAACATGGGGAGCGTTTCAGATAGCCAACCACGGGA 238
|||| ||||| ||| |||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 179 CCACTCTCATAGGAAATGCGTGTAAAACGTGGGGAGCGTTTCAGATAGCCAACCACGGGA 238
Query 239 TTTCTCAGAAGCTTCTCGATGATATCGAGTCTCTGTCCAAAACCCTATTCGACATGCCGT 298
||||||||||||| ||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 239 TTTCTCAGAAGCTCCTCGACGATATCGAGTCTCTGTCCAAAACCCTTTTTGATATGCCGT 298
Query 299 CAGAGAGGAAGCTTGAAGCGGCTTCCTCCGATAAAGGAGTTAGTGGCTACGGAGAACCTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAGAGAGGAAGCTTGAAGCGGCTTCCTCCGATAAAGGAGTTAGTGGCTACGGAGAACCTC 358
Query 359 GAATCTCCCCCTTTTTCGAGAAGAAAATGTGGTCTGAAGGGTTTACTATTGCCGATGACT 418
||||||| ||||||||||||||||||||||||||||||||||| || || || |||| ||
Sbjct 359 GAATCTCTCCCTTTTTCGAGAAGAAAATGTGGTCTGAAGGGTTCACGATAGCGGATGCCT 418
Query 419 CCTACCGCAACCATTTCAATACTCTTTGGCCTCATGATCACACCAAGTACTGCGGTATAA 478
|||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CCTATCGCAACCATTTCATTTCTCTTTGGCCTCATGATCACACCAAGTACTGCGGAATAA 478
Query 479 TCCAAGAATACGTGGACGAAATGGAAAAATTAGCAAGCAGACTTCTGTATTGCATATTAG 538
| ||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||
Sbjct 479 TGGAAGAATACGTGGACGAAATGGAAAAATTAGCGAGCAAACTTGTGTCTTGCATATTAG 538
Query 539 GCTCACTTGGTGTCACCGTGGAAGACATTGAATGGGCTCACAAGCTAGAGAAATCTGGAT 598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 GCTCACTTGGTGTCACCGTGGAAGACATTGGATGGGCTCACAAGCTAGAGAAATCTGGAT 598
Query 599 CAAAAGTGGGCAGAGGCGCCATACGACTAAACCACTACCCGGTTTGTCCTGAACCAGAAC 658
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 CAAAAGTGGGCCGAGGCGCCATACGACTAAACCATTACCCGGTTTGTCCTGAACCAGAAC 658
Query 659 GAGCCATGGGTCTAGCCGCTCATACAGACTCCACTATCCTAACCATTCTGCACCAGAGCA 718
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 GAGCCATGGGTTTAGCCGCTCATACAGATTCCACTATCCTAACCATTCTGCACCAGAGCA 718
Query 719 ACACGGGAGGGCTACAAGTGTTCAGGGAAGAGTCCGGTTGGGTCACGGTTGAGCCGGCTC 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 719 ACACGGGAGGGCTACAAGTGTTCAGGGAAGAGTCCGGTTGGGTTACGGTTGAGCCAGTTC 778
Query 779 CTGGTGTCCTCGTGGTCAACATTGGTGATCTCTTTCACATCTTATCGAACGGGAAAATCC 838
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 779 CTGGTGTCCTCGTGGTCAACATGGGCGATCTCTTTCACATCTTATCAAACGGGAAAATCC 838
Query 839 CAAGCGTGGTTCATCGAGCCAAAGTTAACCATACTCGGTCAAGAATTTCGATTGCGTACT 898
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 CAAGCGTGGTTCACCGAGCCAAAGTCAACCATACTCGGTCAAGAATTTCGATTGCGTACT 898
Query 899 TATGGGGTGGTCCAGCTGGTGATGTGCAAATCGCACCTATCTCTAAGTTAACCGGTCCGG 958
| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 899 TGTGGGGTGGTCCAGCTGGTGAAGTGCAAATCGCACCTATATCTAAGTTAATCGGTCCGG 958
Query 959 CTGAACCGTCTCTTTACCGGTCAATTACATGGAAAGAGTATCTCCAAATAAAGTATGAGG 1018
|||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 959 TTGAACCGTCTCTATACCGATCAATCACATGGAAGGAGTATCTCCAAATAAAGTACGAGG 1018
Query 1019 TTTTCGACAAGGCCAT-GGACGCAATTAGGGTCGTTAATCCCACCAATTAA 1068
||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 1019 TTTTCGACAAGGC-ATTGGACGCAATTAGGGTCATTAATCCCACCAATTAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5