BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80340.1 Length=1083 Score E Sequences producing significant alignments: (Bits) Value Ahg909680 jgi|Araly1|909680|Al_scaffold_0002_2761 1628 0.0 Ahg951665 jgi|Araly1|951665|scaffold_103200001.1 760 0.0 > Ahg909680 jgi|Araly1|909680|Al_scaffold_0002_2761 Length=1068 Score = 1628 bits (881), Expect = 0.0 Identities = 989/1043 (95%), Gaps = 0/1043 (0%) Strand=Plus/Plus Query 38 ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAAC 97 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAAC 60 Query 98 CCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCCTAAAGATGATCTCCTC 157 | ||| ||||||||| | ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct 61 CTACCCGACTTCAAAGCCCTCCCAGATTCTTACACATGGACCCCCAAAGATGATCTCCTC 120 Query 158 TTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATATCCACGTG 217 ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 TTCTCTGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATCCCCACGTG 180 Query 218 GCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCAGATCACCAACCACGGC 277 |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 181 ACCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTACAGATCAGCAACCACGGC 240 Query 278 GTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTCCC 337 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 241 GTACCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTAAC 300 Query 338 GTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTAGCT 397 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 GTGCAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTGGCT 360 Query 398 CGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTTCACCGTTATTGGCTCT 457 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 CGTATTGCTTCTTTCTTTAATAAGAAAATGTGGTCCGAAGGTTTCACCGTTATTGGCTCT 420 Query 458 CCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAAATACTGTGAAATTATT 517 || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 CCTCTCCAAGATTTCCGTAAACTCTGGCCCAGCCATCACCTCAAATACTGTGAAATTATT 480 Query 518 GAAGAGTATGAAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTCGCATTAGGT 577 |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 481 GAAGAGTACGGAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTGGCATTGGGT 540 Query 578 TCACTGGGAGTTGAAGAAAAGGACATACAATGGGCCGGGCCTAATTCAGACTTTCAAGGA 637 ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 541 TCACTGGGAGTGGAAGAAAAGGACATAAAATGGGCTGGGCCTAATTCAGACTTTCAAGGA 600 Query 638 ACCCAAGCAGTTATCCAACTAAACCATTATCCAAAATGTCCAGAACCAGACAGAGCCATG 697 |||||||||| |||||| ||||||||||| || | ||| |||||||||||||| |||||| Sbjct 601 ACCCAAGCAGCTATCCAGCTAAACCATTACCCCATATGCCCAGAACCAGACAGGGCCATG 660 Query 698 GGCCTCGCAGCCCATACAGACTCGACCCTCATGACAATTCTGTACCAGAACAACACCGCC 757 |||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||| Sbjct 661 GGCCTCGCGGCCCATACCGACTCAACTCTCATGACCATTCTGTACCAGAACAACACCGCC 720 Query 758 GGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGCGCCACCTGTCCCTGGCTCG 817 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 721 GGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGTGCCACCTGTCCCTGGCTCG 780 Query 818 CTGGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCGAGCGTG 877 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 781 CTAGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCAAGCGTG 840 Query 878 CTTCACCGAGCCAGGGTTAACCACGTCCGATCTCGGTTCTCAATGGCTTACCTGTGGGGT 937 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 841 CTTCACCGAGCCAGGGTTAACCACGTCCGGTCTCGGTTCTCAATGGCTTACCTGTGGGGT 900 Query 938 CCACCATCCGATATAATGATCTCTCCACTTCCCAAACTGGTTGATCCTCTCCAATCTCCT 997 |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| Sbjct 901 CCACCATCCGATATAATGATCTCTCCACTTCCGAGACTCGTTGATCCTCTCCAATCTCCT 960 Query 998 CTCTACCCATCTCTCACTTGGAAACAATACCTTGCTACCAAAGCTACTCATTTTAATCAA 1057 |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 961 CTCTACCCATCTCTCACTTGGAAACAGTACCTCGCTACCAAAGCTACTCATTTTAATCAG 1020 Query 1058 TCTCTTTCCATTATTAGAAATTA 1080 |||||||||||||||| |||||| Sbjct 1021 TCTCTTTCCATTATTAAAAATTA 1043 > Ahg951665 jgi|Araly1|951665|scaffold_103200001.1 Length=527 Score = 760 bits (411), Expect = 0.0 Identities = 461/486 (95%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 22 ACATAAGCCTTTTAGCATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCA 81 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 ACACAAGCCTTTTAGCATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCA 65 Query 82 CATCCCACTCTCAAACCCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCC 141 ||||||||||||||||| ||| ||||||||| | ||||| ||||||||||| ||||| || Sbjct 66 CATCCCACTCTCAAACCTACCCGACTTCAAAGCCCTCCCAGATTCTTACACATGGACCCC 125 Query 142 TAAAGATGATCTCCTCTTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCT 201 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 126 CAAAGATGATCTCCTCTTCTCTGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCT 185 Query 202 CTCCGATATCCACGTGGCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCA 261 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 186 CTCCGATCCCCACGTGACCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTACA 245 Query 262 GATCACCAACCACGGCGTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAG 321 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GATCAGCAACCACGGCGTACCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAG 305 Query 322 TCTTTTCCGGCTTCCCGTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTC 381 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 306 TCTTTTCCGGCTTAACGTGCAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTC 365 Query 382 CGGCTACGGCGTAGCTCGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTT 441 |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 366 CGGCTACGGCGTGGCTCGTATTGCTTCTTTCTTTAATAAGAAAATGTGGTCCGAAGGTTT 425 Query 442 CACCGTTATTGGCTCTCCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAA 501 |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 426 CACCGTTATTGGCTCTCCTCTCCAAGATTTCCGTAAACTCTGGCCCAGCCATCACCTCAA 485 Query 502 ATACTG 507 |||||| Sbjct 486 ATACTG 491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40334046186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5