BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80340.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909680 jgi|Araly1|909680|Al_scaffold_0002_2761 1628 0.0
Ahg951665 jgi|Araly1|951665|scaffold_103200001.1 760 0.0
> Ahg909680 jgi|Araly1|909680|Al_scaffold_0002_2761
Length=1068
Score = 1628 bits (881), Expect = 0.0
Identities = 989/1043 (95%), Gaps = 0/1043 (0%)
Strand=Plus/Plus
Query 38 ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAAC 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAAC 60
Query 98 CCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCCTAAAGATGATCTCCTC 157
| ||| ||||||||| | ||||| ||||||||||| ||||| || |||||||||||||||
Sbjct 61 CTACCCGACTTCAAAGCCCTCCCAGATTCTTACACATGGACCCCCAAAGATGATCTCCTC 120
Query 158 TTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATATCCACGTG 217
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TTCTCTGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATCCCCACGTG 180
Query 218 GCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCAGATCACCAACCACGGC 277
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 181 ACCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTACAGATCAGCAACCACGGC 240
Query 278 GTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTCCC 337
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GTACCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTAAC 300
Query 338 GTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTAGCT 397
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GTGCAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTGGCT 360
Query 398 CGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTTCACCGTTATTGGCTCT 457
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 CGTATTGCTTCTTTCTTTAATAAGAAAATGTGGTCCGAAGGTTTCACCGTTATTGGCTCT 420
Query 458 CCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAAATACTGTGAAATTATT 517
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CCTCTCCAAGATTTCCGTAAACTCTGGCCCAGCCATCACCTCAAATACTGTGAAATTATT 480
Query 518 GAAGAGTATGAAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTCGCATTAGGT 577
|||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 481 GAAGAGTACGGAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTGGCATTGGGT 540
Query 578 TCACTGGGAGTTGAAGAAAAGGACATACAATGGGCCGGGCCTAATTCAGACTTTCAAGGA 637
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 541 TCACTGGGAGTGGAAGAAAAGGACATAAAATGGGCTGGGCCTAATTCAGACTTTCAAGGA 600
Query 638 ACCCAAGCAGTTATCCAACTAAACCATTATCCAAAATGTCCAGAACCAGACAGAGCCATG 697
|||||||||| |||||| ||||||||||| || | ||| |||||||||||||| ||||||
Sbjct 601 ACCCAAGCAGCTATCCAGCTAAACCATTACCCCATATGCCCAGAACCAGACAGGGCCATG 660
Query 698 GGCCTCGCAGCCCATACAGACTCGACCCTCATGACAATTCTGTACCAGAACAACACCGCC 757
|||||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct 661 GGCCTCGCGGCCCATACCGACTCAACTCTCATGACCATTCTGTACCAGAACAACACCGCC 720
Query 758 GGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGCGCCACCTGTCCCTGGCTCG 817
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 GGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGTGCCACCTGTCCCTGGCTCG 780
Query 818 CTGGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCGAGCGTG 877
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 CTAGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCAAGCGTG 840
Query 878 CTTCACCGAGCCAGGGTTAACCACGTCCGATCTCGGTTCTCAATGGCTTACCTGTGGGGT 937
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 CTTCACCGAGCCAGGGTTAACCACGTCCGGTCTCGGTTCTCAATGGCTTACCTGTGGGGT 900
Query 938 CCACCATCCGATATAATGATCTCTCCACTTCCCAAACTGGTTGATCCTCTCCAATCTCCT 997
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 901 CCACCATCCGATATAATGATCTCTCCACTTCCGAGACTCGTTGATCCTCTCCAATCTCCT 960
Query 998 CTCTACCCATCTCTCACTTGGAAACAATACCTTGCTACCAAAGCTACTCATTTTAATCAA 1057
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 961 CTCTACCCATCTCTCACTTGGAAACAGTACCTCGCTACCAAAGCTACTCATTTTAATCAG 1020
Query 1058 TCTCTTTCCATTATTAGAAATTA 1080
|||||||||||||||| ||||||
Sbjct 1021 TCTCTTTCCATTATTAAAAATTA 1043
> Ahg951665 jgi|Araly1|951665|scaffold_103200001.1
Length=527
Score = 760 bits (411), Expect = 0.0
Identities = 461/486 (95%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 22 ACATAAGCCTTTTAGCATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCA 81
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 ACACAAGCCTTTTAGCATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCA 65
Query 82 CATCCCACTCTCAAACCCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCC 141
||||||||||||||||| ||| ||||||||| | ||||| ||||||||||| ||||| ||
Sbjct 66 CATCCCACTCTCAAACCTACCCGACTTCAAAGCCCTCCCAGATTCTTACACATGGACCCC 125
Query 142 TAAAGATGATCTCCTCTTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCT 201
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 126 CAAAGATGATCTCCTCTTCTCTGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCT 185
Query 202 CTCCGATATCCACGTGGCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCA 261
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 186 CTCCGATCCCCACGTGACCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTACA 245
Query 262 GATCACCAACCACGGCGTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAG 321
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GATCAGCAACCACGGCGTACCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAG 305
Query 322 TCTTTTCCGGCTTCCCGTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTC 381
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTTTTCCGGCTTAACGTGCAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTC 365
Query 382 CGGCTACGGCGTAGCTCGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTT 441
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 366 CGGCTACGGCGTGGCTCGTATTGCTTCTTTCTTTAATAAGAAAATGTGGTCCGAAGGTTT 425
Query 442 CACCGTTATTGGCTCTCCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAA 501
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 426 CACCGTTATTGGCTCTCCTCTCCAAGATTTCCGTAAACTCTGGCCCAGCCATCACCTCAA 485
Query 502 ATACTG 507
||||||
Sbjct 486 ATACTG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5