BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80370.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316923 jgi|Araly1|316923|fgenesh1_pm.C_scaffold_2001956 1995 0.0
Ahg471757 jgi|Araly1|471757|fgenesh2_kg.1__1711__AT1G15570.1 839 0.0
> Ahg316923 jgi|Araly1|316923|fgenesh1_pm.C_scaffold_2001956
Length=1380
Score = 1995 bits (1080), Expect = 0.0
Identities = 1307/1408 (93%), Gaps = 50/1408 (4%)
Strand=Plus/Plus
Query 203 ATGGGGAAGGAGAATGCTGTTTCTGGAAACTCTATACCAATCCATGGTCGCCCTGTAACT 262
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGGAGAATGCTGTTTCTGGAAACACTGTACCAATCCATGGTCGCCCTGTAACT 60
Query 263 CGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTGAAGTGGCT 322
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTCAAGTGGCT 120
Query 323 GCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGAT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGAT 180
Query 383 GAGAAGAAAGCCAATGCACC------TAAGAAGCGAGCTGTTCTTAAGGATATCACTAAT 436
||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 181 GAGAAGAAAGCTAATGCACCTAAGATTAAGAAGCGAGCTGTTCTTAACGATATCACTAAT 240
Query 437 GTTACCTGCGAGAATTCTTACACAAGTTGCTTCAGTGTTGCGGTGGAGAATATCAAGCAG 496
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 241 GTTACCTGCGAGAATTCTTACACAAATTGCTTCAGTGTTGCGGTGGAGAATATCAAGCTG 300
Query 497 ATAAAGAAGGGACGACAGAGTTCTTCTTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCA 556
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 301 ATAAAGAAGGGACGACCGAG------TTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCA 354
Query 557 CAAGTTACAGATGCAAAGGTAGAAGTTGTGTCAAATTCAGCAGGAGCAAGCTTGTCTGTT 616
|||||||||||||||||||| | | | | | | ||||| ||||| |
Sbjct 355 CAAGTTACAGATGCAAAGGT---A-----G---------G-A-G-G-AAGCTCGTCTGGT 393
Query 617 TTTACAGATACAAGCTTAGGCACAAACGAAACATCCTATAGCATTATCGCAAAGCCAAGC 676
| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 394 TGTACAGATACAAGCTTAGGCACAAACGAAGCATCTTATAGCTTTATCGCAAAGCCAAGT 453
Query 677 TCCAGATCGCCTCCAAGACCCTTTGGGACAGTTG---AGAGAAGT-T--GTG---G-T-- 724
||||||| ||||||||||||| |||||| ||||| |||| || | | | | |
Sbjct 454 TCCAGATTGCCTCCAAGACCCCTTGGGAGAGTTGAAAAGAGTGGTGTCGGAGCAAGTTCC 513
Query 725 -G-G-AGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGATCCTCTACTC 781
| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 514 AGTGTGGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGACCCTCTGCTC 573
Query 782 TGTAGCCTTTATGCACCTGACATCTACTACAACCTGCGTGTTGCTGAGCTTAAACGAAGA 841
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 574 TGTAGCCTTTATGCACCTGATATCTACTACAACCTGCGTGTTGCTGAGCTCAATCGCAGA 633
Query 842 CCATTTCCTGATTTTATGGAGAAAACACAAAGAGATGTGACTGAGACAATGCGGGGAATT 901
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 634 CCATTTCCTGATTTTATGGAGAGAACACAAAGAGATGTGACTGAGACAATGCGGGGAATT 693
Query 902 CTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTTTAC 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 CTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTCTAC 753
Query 962 CTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTATGTGGAAAGACAGAGACTT 1021
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 754 CTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTACGTGGAAAGACAGAGACTT 813
Query 1022 CAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAGTATGAGGAAATCCATGCGCCA 1081
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 814 CAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAATATGAGGAAATCAATGCGCCA 873
Query 1082 CGCATTGAGGAGTTCTGCTTCATCACGGATAACACTTATACAAGAGATCAGGTCCTGGAA 1141
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 874 CGAATTGAGGAGTTCTGCTTCATCACGGATAACACTTACACAAGAGATCAGGTCCTGGAA 933
Query 1142 ATGGAGAGCCAAGTACTCAAGCATTTTAGCTTTCAAATTTACACCCCCACTTCAAAAACA 1201
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 934 ATGGAGAGCCAAGTAGTCAAGCATTTTAGCTTTCAAATATACACCCCCACTTCAAAAACA 993
Query 1202 TTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCAAAGTCTGGAAATG 1261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 994 TTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCCAAGTCTGGAAATG 1053
Query 1262 GAGTTTCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTC 1321
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GAGTTCCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTC 1113
Query 1322 CTTCCTTCGATCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTAAACCAATCA 1381
|| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1114 CTGCCTTCGGTCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTGAACCAATCA 1173
Query 1382 AGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAA 1233
Query 1442 GCATCTGTCCACGCCTTGCAAGAT-TTACAGCTTAACACCAAAGGATGTTCCTTAAACTC 1500
|||||||||||||| ||||||||| || ||||||||||||||||||||| |||| |||||
Sbjct 1234 GCATCTGTCCACGCTTTGCAAGATCTT-CAGCTTAACACCAAAGGATGTCCCTTGAACTC 1292
Query 1501 TATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTCAGTTCTGGAGA 1560
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1293 TATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTTAGTTCAACAGA 1352
Query 1561 GCTACCGGACAAGCTATTCATCTCCTAA 1588
|||||| || ||||||||||||||||||
Sbjct 1353 GCTACCAGAGAAGCTATTCATCTCCTAA 1380
> Ahg471757 jgi|Araly1|471757|fgenesh2_kg.1__1711__AT1G15570.1
Length=1849
Score = 839 bits (454), Expect = 0.0
Identities = 723/853 (85%), Gaps = 18/853 (2%)
Strand=Plus/Plus
Query 736 CCCGAAATTCGTTGACATTGATTCAGATGACAAAGATCCTCTACTCTG-TAGCCTTTATG 794
|||||||||||| |||||||||||||||||||| ||||||||||| || | |||| ||||
Sbjct 705 CCCGAAATTCGTAGACATTGATTCAGATGACAAGGATCCTCTACTGTGCT-GCCTCTATG 763
Query 795 CACCTGACATCTACTACAACCTGCGTGTTGCTGAGCTTAAACGAAGACCATTTCCTGATT 854
| ||||| ||||||||||| |||||||| | ||| ||||||| |||||| |||| || |
Sbjct 764 CCCCTGAAATCTACTACAATTTGCGTGTTTCGGAGTTTAAACGCAGACCAGTTCCCGACT 823
Query 855 TTATGGAGAAAACACA-AAGAGATGTGACTGAGACAATGCGGGGAATTCTTGTTGATTGG 913
||||||||| || ||| ||| ||||| || || | |||||||| ||||| |||||||||
Sbjct 824 TTATGGAGAGAATACAGAAG-GATGTCACCCAGTCCATGCGGGGGATTCTGGTTGATTGG 882
Query 914 CTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTTTACCTCACAGTGTAT 973
|||||||||||||| || ||||||||||||| | ||||||| || |||||||||||||||
Sbjct 883 CTTGTAGAGGTCTCTGAAGAATACACACTTGCATCTGACACCCTCTACCTCACAGTGTAT 942
Query 974 CTCATAGACTGGTTTCTCCATGGAAACTATGTGGAAAGACAG-AGACTTCAATTGCTTGG 1032
|||||||||||||| |||||||||||||| ||| |||||||| | ||||||| |||| ||
Sbjct 943 CTCATAGACTGGTTCCTCCATGGAAACTACGTGCAAAGACAGCA-ACTTCAACTGCTCGG 1001
Query 1033 CATCACTTGTATGCTCATTGCTTCGAAGTATGAGGAAATCCATGCGCCACGCATTGAGGA 1092
||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 1002 CATCACTTGCATGCTAATTGCCTCGAAATATGAGGAAATCTGTGCGCCACGCATTGAGGA 1061
Query 1093 GTTCTGCTTCATCACGGATAACACTTATACAAGAGATCAGGTCCTGGAAATGGAGAGCCA 1152
||| |||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||
Sbjct 1062 GTTTTGCTTCATTACGGATAACACCTACACAAGAGATCAGGTCTTGGAAATGGAGAACCA 1121
Query 1153 AGTACT-CAAGCATTTTAGCTTTCAAATTTACACCCCCACTTCAAAAACATTCCTCAGGA 1211
|||||| || |||||||||||||||||| ||||| |||||| ||||||| ||||||||||
Sbjct 1122 AGTACTTCA-GCATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTCAGGA 1180
Query 1212 GATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCAAAGTCTGGAAATGGAGTTTCTGG 1271
|||||||| ||||||| || | ||| || || | || || ||| | |||||||| |
Sbjct 1181 GATTTCTTAGAGCAGCACACGCCTCTCACCTGAGCCCGAGCCTTGAAGTCGAGTTTCTAG 1240
Query 1272 CGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTCCTTCCTTC-G 1330
| | || ||||| || ||||| ||||| ||||| | ||||||||||| |||||||| |
Sbjct 1241 CCAGCTATCTAACAGAGTTGACATTAATAGACTATCAATTCTTGAAGTTTCTTCCTTCCG 1300
Query 1331 ATCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTAAACCAATCAAGCCACCCT 1390
| | |||||||| || ||||||||||||||||||||| | ||||||||| ||||||
Sbjct 1301 TTGTT-GCTGCTTCAGCAGTTTTTCTTGCCAAGTGGACAATGGACCAATCAAACCACCCA 1359
Query 1391 TGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAAGCATCTGTC 1450
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1360 TGGAATCCAACACTTGAGCATTACACAACGTACAAAGCATCAGATCTGAAAGCATCTGTC 1419
Query 1451 CACGCCTTGCAAGAT-TTACAGCTTAACACCAAAGGATGTTCCTTAAACT-CTATACGCA 1508
|| ||||| |||||| || ||||||||||||||||| || |||| ||| |||||||||
Sbjct 1420 CATGCCTTACAAGATCTT-CAGCTTAACACCAAAGGTTGC-CCTTTAACCGCTATACGCA 1477
Query 1509 TGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTAT-TCAGTTCTGG-AGAGCTACC 1566
|||||||||| || || || |||||||| |||||||| | ||| ||| | ||||||
Sbjct 1478 TGAAGTATAGGCAAGAGAAATTCAAATCTGTGGCGGT-TCTCACATCTCCCA-AGCTACT 1535
Query 1567 GGACAAGCTATTC 1579
|||| |||||||
Sbjct 1536 TGACACGCTATTC 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5