BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80390.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477214 jgi|Araly1|477214|fgenesh2_kg.2__2344__AT1G80390.1 798 0.0
> Ahg477214 jgi|Araly1|477214|fgenesh2_kg.2__2344__AT1G80390.1
Length=540
Score = 798 bits (432), Expect = 0.0
Identities = 506/542 (93%), Gaps = 4/542 (1%)
Strand=Plus/Plus
Query 1 ATGTCACCGGAGGAATACGTTAGGGTTTGGCCGGATTCCGGTGATCTTGGAGGAACTGAG 60
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 ATGTCATCGGAGGAATACGTTAGGGTTTGGCCCGATTCCGGTGATCTTGGAGGAATTGAG 60
Query 61 CTGACCCTAGCTTTGCCTGGCACTCCGACAAATGCATCGGAAGGTCCAAAAAAGTTCGGG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 61 CTGACCCTAGCTTTGCCTGGCACTCCGACAAATGCATCGGACGGTCCAAAAAAGTGCCGA 120
Query 121 AACAAACGTAGATTCCTCGAGACCGTTGATTTAAAACTCGGGGAAGCACACGAGAACAAT 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 AACAAACGTAGATTCCTCGAGACCGTTGATTTAAAACTCGGGGAAGGACACGAGAATAAG 180
Query 181 TATATCTCAAGCATGGTCACTAATGACCAGTTGGT-GGGCTGGCCGCCGGTAGCGACAGC 239
||| |||||||| || ||||||||||||||||||| ||| |||||||||||| |||| ||
Sbjct 181 TATTTCTCAAGCCTGATCACTAATGACCAGTTGGTTGGG-TGGCCGCCGGTAACGACGGC 239
Query 240 GAGGAAAACAGTGAGGCGGAAATACGTGAAAGTGGCGTTGGATGGTGCGGCCTATCTCAG 299
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 240 GAGGAAAACAGTGAGGCGGAAATACGTGAAAGTGGCGGTGGATGGTGCGGCGTATCTCAG 299
Query 300 -AAAGGTTGATCTTGGGATGTACGATTGCTATGGACAGCTTTTCACCGCTCTAGAAAACA 358
|||| | ||||||| ||||||||||||||| || || ||||||||||||||||||||||
Sbjct 300 GAAAG-TCGATCTTGAGATGTACGATTGCTACGGGCAACTTTTCACCGCTCTAGAAAACA 358
Query 359 TGTTTCAGGGGATAATAACAATATGTAGAGTGACAGAGTTGGAGAGGAAGGGAGAGTTTG 418
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 359 TGTTTCAGGGTATAATAACAATATGTAAAGTGACGGAGTTGGAGAGGAAGGGAGAGTTTG 418
Query 419 TTGCTACTTACGAGGATAAGGACGGTGACTTGATGTTAGTCGGAGATGTGCCGTGGATGA 478
| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 419 TGGCTACTTACGAGGATAAGGACGGTGACTGGATGTTAGTCGGAGATGTCCCGTGGATGA 478
Query 479 TGTTTGTGGAATCTTGCAAACGTATGAGGTTAATGAAAACCGGAGATGCTATTGGATTAT 538
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 479 TGTTTGTGGAATCGTGCAAACGTATGAGGTTGATGAAAATAGGAGATGCTATTGGATTAT 538
Query 539 AG 540
||
Sbjct 539 AG 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5