BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80400.1
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316920 jgi|Araly1|316920|fgenesh1_pm.C_scaffold_2001953 1485 0.0
> Ahg316920 jgi|Araly1|316920|fgenesh1_pm.C_scaffold_2001953
Length=1206
Score = 1485 bits (804), Expect = 0.0
Identities = 1111/1248 (89%), Gaps = 66/1248 (5%)
Strand=Plus/Plus
Query 309 ATGGATGTTTCTTCCATTGTGCGAAATACAACCCTAACTGATCAAGATCCTTTGTTAATG 368
||||||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||||
Sbjct 1 ATGGATGTTTCTTCCATTGCGCG--A-ACAAGCCTAACTGATCAACATCCTTTGTTAATG 57
Query 369 G---ACC--A--CG--GTAACCGCGAGCACATCGTTGACATTACAA-GCAATGACGAGGA 418
| ||| | || ||||||||| ||||||||||||||||||| | | |||| |
Sbjct 58 GACCACCATACCCGCAATAACCGCGACCACATCGTTGACATTACAATG-AGCAACGACCA 116
Query 419 GGACTCTTCATCAAGATCTTCTCTCGATGAGCTTACTCCTCAAGGTAACTCACATCAAGG 478
||| | || | |||||| |||||||||| ||||||| || |||||||
Sbjct 117 GGA--C-TC-T-----TCTTCTATCGATGAGCTCACTCCTC-------CT--CATCAAGC 158
Query 479 TGAAGA-GACAGTATTATCATCATCAAATGCTACACAACAACACCCAACTCATCCATCTC 537
|||||| || | | |||||||||||| || | | || | |||||| |||
Sbjct 159 TGAAGAGGAGA-CAGTATCATCATCAACTG-T---------TA--CAGCGCATCCAGCTC 205
Query 538 CTCCTCAGCAAAGACCAACTTCTTCTAGGAGAGGAGATAACGGGAATGGTCGCCGTACTA 597
|||||||||||||||||||||||||||||| | | | | | | | | ||||||
Sbjct 206 CTCCTCAGCAAAGACCAACTTCTTCTAGGA-A--TGCTCGCCGTACT--AC-TAGTACTA 259
Query 598 GGAGTCCATTGAATTCTGGCCTCTGGATCTCAGTTGAGTTAGTTGTCACTGTCGCTCAGA 657
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 260 GGAGTCCACTGAATTCCGGCCTTTGGATCTCAGTTGAGTTAGTTGTCACTGTCGCTCAGA 319
Query 658 TTGTTGCAGCCATTGTAGTTATGGTTCTGGCTAAAGATGAACATCCTGAAGCGCCATTAT 717
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 320 TTGTTGCAGCCATTGTAGTTATGGTTCTCGCTAAAGATGAACATCCCGAAGCGCCATTAT 379
Query 718 TTACTTGGGTTATTGGATATACTTGTGGCTGTCTAGCCACTCTCCCTATTCTCTATTGGC 777
|||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 380 TTACTTGGGTTATTGGTTATACTTCTGGCTGTATAGCCACTCTCCCTATTCTCTATTGGC 439
Query 778 GTTTTCGCACTTATAATCGAGCTACAGGGCAAGACTCTTCACAACGT-GC--TACCTCTT 834
||||||||||||||| ||||| | |||| ||||| |||||||||||| | || |||||
Sbjct 440 GTTTTCGCACTTATAGTCGAGGTGCAGGACAAGATTCTTCACAACGTCTCAGTAGCTCTT 499
Query 835 CTCAAGGC---AAT-A---GT--GAGTCCACACCATATACAGCAGTCTCAGTTGCTCAAG 885
||| || | ||| | | |||||| ||||||||||||| ||||||||||||||||
Sbjct 500 CTCTAGCCAATAATAACCCTTCAGAGTCCGCACCATATACAGCCGTCTCAGTTGCTCAAG 559
Query 886 CAGCAGATGAAGAAAATAGCACTGGCGTGAGTGCAGCACCTAGAAACAATCAAGTTGGGG 945
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |
Sbjct 560 CAGCAGATGAAGAAAATAGCACCGACATGAGTGCAGCACCTAGAAACAATCAAGTTGGTG 619
Query 946 AAAGCTTAAGAACAAGGCTCAACGGGCTAGTGGACCACTTCAAGATGGCGATTGATTGTT 1005
||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 620 AAACCTTAAGAACAAGGCTCAACGGGCTGGTGGACCACTTCAAGATGGCCATTGATTGTT 679
Query 1006 TCTTTGCGGTGTGGTTTGTTGTGGGGAATGTATGGATATTTGGAGGTCACTCATCTCCTT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TCTTTGCGGTGTGGTTTGTTGTGGGGAATGTATGGATATTTGGAGGTCACTCATCTCCTT 739
Query 1066 CTGATTCTCCTAAACTGTACAGGTTATGCATAGCGTTCCTTACTTTCAGTTGCATTGGAT 1125
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 740 CTGATTCTCCTAAACTGTACAGGTTATGCATAGCGTTCCTAACTTTCAGTTGCATTGGAT 799
Query 1126 ATGCAATGCCATTCATACTATGTGCAACCATATGTTGTTGTTTGCCTTGCTTAATCTCGG 1185
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 800 ATGCAATGCCATTCATACTATGTGCAACCATATGTTGTTGTCTGCCTTGCTTAATCTCTG 859
Query 1186 TTCTCGGATTTCGAGAGAACTTCTCACAAACTAGAGGAGCCACTGCCGAGGCCATCAACG 1245
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 860 TTCTCGGATTTCGAGAAAACTTCTCACAAACTAGAGGAGCCACTACCGAGGCCATCAACG 919
Query 1246 CATTGCCTGTCTACAGGTTCAAATCAAAAAGTAGAAATGATTTGGAGTTTTCAGAAGAAG 1305
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 920 CACTGCCTGTCTACAGGTTCAAATCAAAAAGTAGAAATGATTTGGAATTTTCAGAAGAAG 979
Query 1306 GTGAAGGTGGATTTCTTCTCTTGGGGTCTCAGAAGAAACGTCTTATATCAGGCGAGGATG 1365
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 980 GTGAAGGTGGATTTCTTCTCTTGGGATCTCAGAAGAAACGTCTTATATCAGGCGAGGATG 1039
Query 1366 CCAGCTGTTGCATCTGCTTGACTAGATATGGAGACGACGAACAAGTTAGAGAGCTGCCAT 1425
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1040 CCAGCTGTTGCATCTGCTTGACTAGATATGGAGACGATGAACAAGTTAGAGAGCTTCCAT 1099
Query 1426 GCTCACATGTCTTCCATGTAGACTGTGTAGACAAATGGCTTAAAATCAATGCGACTTGCC 1485
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1100 GCTCGCATGTCTTCCATGTAGACTGTGTAGACAAATGGCTAAAAATCAATGCGACTTGCC 1159
Query 1486 CTCTCTGCAAAAATGAGGTTGGAGAAAGCAGCAGT-GCTTCCTCATAG 1532
||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 1160 CTCTCTGTAAAAATGAGGTTGGAGAAAGCAGC-GTTGCTTCCTCATAG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65553311645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5