BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80410.2
Length=3183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477212 jgi|Araly1|477212|fgenesh2_kg.2__2342__AT1G80410.1 4601 0.0
> Ahg477212 jgi|Araly1|477212|fgenesh2_kg.2__2342__AT1G80410.1
Length=3262
Score = 4601 bits (2491), Expect = 0.0
Identities = 2646/2722 (97%), Gaps = 5/2722 (0%)
Strand=Plus/Plus
Query 117 tcttcgtcttcGCGAGCTCTCTCAGTAGCGCAA-TAAAATGGGGGCTTCGCTTCCTCCTA 175
||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 76 TCTTCTTCTTCGCGAGCTCTCTTAGTAGCGCAAGAAAAATGGGGGCTTCGCTTCCTCCTA 135
Query 176 AGGAGGCCAACCTCTTCAAGCTCATCGTCAAATCATATGAGACTAAGCAGTACAAGAAGG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AGGAGGCCAACCTCTTCAAGCTCATCGTCAAATCATATGAGACTAAGCAGTACAAGAAGG 195
Query 236 GACTCAAGGCAGCTGATGCCATATTAAAAAAGTTTCCTGATCATGGAGAGACTTTATCGA 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 196 GACTCAAGGCAGCTGATGCCATATTAAAAAAGTTTCCTGATCATGGAGAGACTTTATCTA 255
Query 296 TGAAAGGACTGACTCTAAACTGTATGGACCGCAAAACTGAAGCATATGAGCTTGTTCGAC 355
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 256 TGAAAGGACTGACTCTAAACTGTATGGACCGCAAAACTGAAGCTTATGAGCTTGTTAGGC 315
Query 356 TTGGAGTGAAGAATGATATCAAAAGCCATGTTTGCTGGCATGTGCTTGGTCTTTTGTACC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TTGGAGTGAAGAATGATATCAAAAGCCATGTTTGCTGGCATGTGCTTGGTCTTTTGTACC 375
Query 416 GGTCAGACAGAGAGTATAGAGAAGCAATCAAATGCTACCGAAATGCTCTTAGAATAGATC 475
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 376 GGTCAGACAGAGAGTATAGAGAAGCCATCAAATGCTACCGAAATGCTCTTAGAATAGATC 435
Query 476 CTGATAACCTTGAAATACTCAGAGACCTCTCACTTCTGCAGGCACAAATGCGGGACTTAT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CTGATAACCTTGAAATACTCAGAGACCTCTCACTTCTGCAGGCACAAATGCGGGACTTAT 495
Query 536 CCGGTTTTGTGGAGACCAGGCAGCAGCTTTTGACATTGAAGCCTAATCACCGAATGAACT 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 496 CCGGTTTTGTGGAGACCAGGCAGCAGCTTTTGACATTAAAGCCTAATCACCGAATGAACT 555
Query 596 GGATTGGCTTTGCAGTCTCTCAGCATTTAAACGCAAATGCTTCTAAAGCTGTTGAAATTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GGATTGGCTTTGCAGTCTCTCAGCATTTAAACGCAAATGCTTCTAAAGCTGTTGAAATTT 615
Query 656 TGGAAGCGTATGAAGGCACCTTAGAGGATGACTATCCTCCTGAGAACGAGCTAAT-TGAA 714
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 616 TGGAAGCGTATGAAGGCACTTTAGAGGATGACTATCCTCCTGAGAACGAGCT-ATGTGAA 674
Query 715 CACACAGAAATGATTCTATACAAGGTTTCCTTGCTTGAGGAGAGTGGTTCTTTTGACAAA 774
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CACACTGAAATGATTCTATACAAGGTTTCCTTGCTTGAGGAGAGTGGTTCTTTTGACAAA 734
Query 775 GCTCTTGAGGAGTTGCACAAAAAAGAGCCGAAAATAGTTGATAAGTTGTCTTACAAAGAA 834
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 735 GCTCTTGAGGAGTTGCACAAAAAAGAACCGAAAATAGTTGATAAGTTGTCTTACAAAGAA 794
Query 835 CAAGAGGTATCTCTCTTGTCAAAGGTTGGTCGTCTAGAAGAAGCCAATAAACTCTACAGG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CAAGAGGTATCTCTCTTGTCAAAGGTTGGTCGTCTAGAAGAAGCCAATAAACTCTACAGG 854
Query 895 GTTTTACTTTCCATGAACCCTGACAATTACAGATATCATGAGGGCCTCCAAAAATGCCTT 954
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 855 GTTTTACTTTCCATGAACCCTGACAATTACAGATATTATGAAGGCCTTCAAAAATGCCTT 914
Query 955 GGATTGTATTCAGAAAGTGGTCAATATTCGTCCGACCAGATTGAAAAGTTAAATGCTTTG 1014
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 915 GGTTTGTATTCAGAAAGTGGTCAATATTCGTCCGACCAGATTGAGAAGTTAAATGCTTTG 974
Query 1015 TACCAGTCTCTAAGTGAGCAGTACACTCGGTCATCCGCTGTTAAGAGGATACCATTGGAT 1074
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 975 TACCAGTCTCTAAGTGAGCAGTACACTAGGTCATCCGCTGTTAAGAGGATACCATTGGAT 1034
Query 1075 TTTCTGCAAGATGAGAACTTTAAGGAGGCTGTAGCAAAGTACATTAAACCTCTTTTGACA 1134
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1035 TTTCTGCAAGATGAGAACTTTAAGGAGGCTGTAGCAAAATACATTAAACCTCTGTTGACA 1094
Query 1135 AAGGGTGTTCCTTCATTATTTTCTGATCTCTCTTCTCTGTATGATCACCCTCGCAAGCCT 1194
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1095 AAGGGTGTTCCTTCATTATTTTCTGATCTCTCTTCTTTGTATGATCACCCTCGCAAGCCT 1154
Query 1195 GATATATTGGAGCAACTAGTTGTTGAGATGAAACATTCGATTGGGACTACAGGAAGTTTC 1254
||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||
Sbjct 1155 GATATATTGGAGCAACTAGTTGTCGAGATGGAACATTCGATTAGGACTACCGGAAGTTTC 1214
Query 1255 CCAGGAAGTGATGTAAAAGAGCCCCCTTCTACACTATTGTGGACATTGTTTTTCTTGGCT 1314
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1215 CCAGGAAGTGATGTAAAAGAGCCCCCTTCCACACTCTTGTGGACATTTTTTTTCTTGGCT 1274
Query 1315 CAGCATTATGACAGGCGTGGTCAATATGATGTTGCGCTCTGTAAAATTGATGAGGCCATT 1374
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CAGCATTATGACAGGCGGGGTCAATATGATGTTGCGCTCTGTAAAATTGATGAGGCCATT 1334
Query 1375 GCTCATACGCCAACAGTGATTGATCTGTACTCCGTCAAGAGCCGAATAATGAAGCATGCA 1434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1335 GCTCATACGCCAACAGTGATTGATCTGTACTCCGTTAAGAGCCGAATAATGAAGCATGCA 1394
Query 1435 GGAGACTTGACTGCCGCTGCTGCACTTGCCGATGAAGCTAGAGGCATGGACCTAGCAGAT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GGAGACTTGACTGCCGCTGCTGCACTTGCCGATGAAGCTAGAGGCATGGACCTAGCAGAT 1454
Query 1495 CGTTATATAAACAGTGAATGCGTTAAGCGTATGTTACAAGCAGATCAGGTGCCCTTGGCT 1554
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1455 CGTTATATAAACAGTGAATGCGTTAAGCGTATGTTGCAAGCAGATCAGGTGCCCTTGGCT 1514
Query 1555 GAGAAAACTGCTGTTTTATTTACCAAAGAGGGGGATCAGCTCAACAATCTTCATGACATG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GAGAAAACTGCTGTTTTATTTACCAAAGAGGGGGATCAGCTCAACAATCTTCATGACATG 1574
Query 1615 CAGTGCATGTGGTATGATCTTGCATCTGGAGATAGCTATTTCCGTCAGGGTGATCTTGGA 1674
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1575 CAGTGCATGTGGTATGATCTTGCATCTGGAGATAGCTACTTCCGTCAGGGTGATCTTGGA 1634
Query 1675 CGTGCTTTGAAGAAGTTTTTGGCTGTGGAGAAGCACTATGCTGACATTTCTGAAGATCAA 1734
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1635 CGTGCTTTGAAAAAGTTCTTAGCTGTGGAGAAGCACTATGCTGACATTTCTGAAGATCAA 1694
Query 1735 TTTGATTTCCACTCGTATTGTTTAAGGAAAATGACTTTGCGTTCATATGTTGATATGCTT 1794
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1695 TTTGATTTCCACTCGTATTGCCTAAGGAAAATGACTTTGCGTTCATATGTTGACATGCTT 1754
Query 1795 AAGTTCCAAGACCGATTGCACTCATTCCCATATTTCCACAAAGCAGCAATCAGAGCTATC 1854
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1755 AAGTTCCAAGACCGATTGCACTCGTTCCCATATTTCCACAAAGCAGCAATCAGAGCTATC 1814
Query 1855 AGGTGCTACCTGAAATTGCATGACTCTCCCAAGTCAACTGCTGGAGAAGATGAAATGTCA 1914
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1815 AGGTGCTACCTGAAATTGCATGACTCTCCCAAGTCGACTGCTGAAGAAGATGAAATGTCA 1874
Query 1915 AAGTTGGCTCCTGCTCagaagaagaaaatcaagaagcagaaaaaggcagaagcccgagct 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 AAGTTGGCTCCTGCTCAGAAGAAGAAAATCAAGAAGCAGAAAAAGGCAGAAGCCCGAGCT 1934
Query 1975 aagaaagaagctgagagtaagagTGAAGAATCAACTGCCAGTGGTGCCTCTAAGTCTGGC 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1935 AAGAAAGAAGCTGAGAGTAAGAGTGAAGAATCAACTGCCAGTGGTGCCTCTAAGTCTGGC 1994
Query 2035 AAACGAAATGTGAAACCTGTAGACCCAGATCCTCATGGGCAAAAGTTAATTCAGGTTGAG 2094
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1995 AAACGAAATGTGAAACCTGTAGATCCAGATCCTCATGGGCAAAAGTTAATTCAGGTTGAG 2054
Query 2095 GAGCCAATGGCAGAGGCTTCAAAGTACTTGAGACTACTCCAGAAACATTCACCTAATTCT 2154
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2055 CAGCCAATGGCAGAGGCTTCAAAGTACTTGAGACTACTCCAGAAGCATTCGCCTAATTCT 2114
Query 2155 TTGGAGACTCATTTACTTTCCTTTGAGGTCAATATGAGAAAACAGAAGTTTCTGCTTGCA 2214
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2115 TTGGAGACTCATCTACTTTCCTTTGAGGTCAATATGAGAAAACAGAAGTTTCTACTTGCA 2174
Query 2215 TTCCAGGCTGTCAAGCAATTGCTTAAATTGGGTGCAGAGAACCCTGATTCACATCGTTCC 2274
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2175 TTCCAGGCCGTCAAGCAATTGATTAAATTGGATGCAGAGAACCCTGATTCACATCGTTCC 2234
Query 2275 TTGGTTAAATTCTTTCTCATGACAGAATCGATAAGTGCTCCAACGACTGAAGCTGAGAAA 2334
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2235 TTGGTTAAATTCTTTCTCATGGCAGAATCGATAAGTGCTCCAACGACTGAAGCTGAGAAA 2294
Query 2335 CTTCGTTGGAGGGTCCTAGAGGCTGAGCGCCCATCAATCAGTCAATTGCAGAATAAATCA 2394
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CTTCGTTGGAGTGTTCTAGAGGCTGAGCGCCCATCAATCAGTCAATTGCAGAATAAATCA 2354
Query 2395 CTAATGGAAGCAAACAAAGAGTTTCTTGGTAGACACGAAGATTCTTTGGTGCACAGAGCT 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2355 CTAATGGAAGCAAACAAAGAGTTTCTTGGTAGACACGAAGATTCTTTGGTGCACAGAGCT 2414
Query 2455 GCATATGCAGAAATGCTGTATATTTTAGATCCAAGCAAGAAAACCGAGGCAATCAAAATA 2514
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2415 GCATATGCTGAAATGCTGTATATTTTAGATCCAAGCAAGAAAGCCGAGGCAATCAAAATA 2474
Query 2515 ATTGAAGACTCAACCAATAAAGTAGTGCAAACAAATGAAGCTCTAGGACAAGCAAGAGAA 2574
||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||
Sbjct 2475 ATTGAAGACTCAACCAATAAAGTGGTTCAAACAAATGGAGCTCTAGGACCAGCAAGAGAA 2534
Query 2575 TGGAAACTAAAAGACTGTATAGCTGTTCATACGCTCCTAGACACAGTTCTTCTCGACTCA 2634
||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||
Sbjct 2535 TGGAAACTAAAAGACTGTATAGCAGTTCATAAGCTCCTAGACACAGTTCTCCTTGACTCA 2594
Query 2635 CAAGCTGCCTCCAGATGGAAATCACGCTGCGCCGAGTATTTTCCCTGTTCAACTCACTTT 2694
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2595 GATGCTGCCTCCAGATGGAAATCACGCTGCGCCGAGTATTTTCCCTGTTCAACTCACTTT 2654
Query 2695 GAAGGCAAGCATTGCTCTTTGATGCCTGATTCAGTGTACAACTCATCC-CGCAAGAGCAA 2753
||||||||||| ||||| |||| ||||||||||||||||||||| || |||||||||||
Sbjct 2655 GAAGGCAAGCACAGCTCTGTGATACCTGATTCAGTGTACAACTCA-CCTCGCAAGAGCAA 2713
Query 2754 TGAGAACGGTGACACGCCAAACCATCCAATGGGTCAGACTGAATTGAGCGACGGACAACT 2813
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2714 TGAGAACGGTGACACGCCAAACCATCTAGTGGGTCAGACTGAATTGAGCGACGGACAACT 2773
Query 2814 CGAAGCATTCAAGAGCCTCTCA 2835
||||||||||||||||||||||
Sbjct 2774 CGAAGCATTCAAGAGCCTCTCA 2795
Score = 379 bits (205), Expect = 6e-104
Identities = 298/338 (88%), Gaps = 26/338 (8%)
Strand=Plus/Plus
Query 2833 TCA-AAAATGTTTTGGAGTTGTAACATGCCAAATGTGTATAATTGTTTTTCTATATAAGG 2891
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2933 TCAGAAAATG-TTTGGAGTTGTAACATGCCAAATGTGTATAATTGTTTTTCTATATAAGG 2991
Query 2892 CTGGGTTTCAAGTTTGAAGAACAATGCCACaaaaaaaGAGAGGGGTCT-TGTCttttttt 2950
||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||
Sbjct 2992 CTGGGTTTCAAGTTTGAAGAACATTGCCACAAAAAGAGAGAGGG-TCTGTGTCTTTTTTT 3050
Query 2951 ttttcttgttttttttcgttttGTTCTCTCCACAC-TTTAAAGAGGATTT-CT---CT-- 3003
| || || || |||||||||||||||||||||| | ||||| |||||||| | ||
Sbjct 3051 TCTT-TT-TTCTTTTTCGTTTTGTTCTCTCCACGCATTTAA-GAGGATTTTCCGAGCTTT 3107
Query 3004 ---GATGTTGTACCCTTTTATCTCCTTCTTTTTTCGGTTTCTCCACATTATTTATTTTCT 3060
|||||||||||||||||||| |||||||| || ||||| |||||||||||||||| |
Sbjct 3108 TTTGATGTTGTACCCTTTTATCTTCTTCTTTTATCAGTTTCCCCACATTATTTATTTT-T 3166
Query 3061 CC-ATTACA--AT--GTTTAAGCTTCTTGACATCTCTGGAAAATTTT-GATTTGACGAGC 3114
|| |||||| || |||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 3167 CCCATTACATTATCTGTTTAAGCTTCTTGACATCTCTGGAAAATTTTTGTTTTGATGAGC 3226
Query 3115 CTACCTTTGAGTGAGACGTTACATCTTTTTCTTATATA 3152
|| |||||||||| | |||||||||||||||||||||
Sbjct 3227 CTGCCTTTGAGTG-GT-GTTACATCTTTTTCTTATATA 3262
Score = 102 bits (55), Expect = 1e-20
Identities = 75/83 (90%), Gaps = 7/83 (8%)
Strand=Plus/Plus
Query 31 TAGGGTTGAAGCGGATAGTACGCCACCTCTATCTCTCTCTC----ACCCTATCGAACTCG 86
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 4 TAGGGTTGAAGCGGATAGTACGCCACCTCTCTCTCTCTCTCTCTCACCCTATCGAACTCG 63
Query 87 -CG--AAGAACAtcttcttcttc 106
|| ||||||||||||||||||
Sbjct 64 TCGCGAAGAACATCTTCTTCTTC 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120250903465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5